RNA–Protein interactions for RNA: ENST00000461869.5

SF3A3-203, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 3

Gene SF3A3, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-203ENST00000461869 MAP3K19Q56UN5 1328 aa21.49■■□□□ 1.03
SF3A3-203ENST00000461869 PNPLA7Q6ZV29 1317 aa21.49■■□□□ 1.03
SF3A3-203ENST00000461869 USP47Q96K76 1375 aa21.48■■□□□ 1.03
SF3A3-203ENST00000461869 FBLN1P23142 703 aa21.48■■□□□ 1.03
SF3A3-203ENST00000461869 HOXC9P31274 260 aa21.48■■□□□ 1.03
SF3A3-203ENST00000461869 ANKRD36BQ8N2N9 1353 aa21.48■■□□□ 1.03
SF3A3-203ENST00000461869 FAM208AQ9UK61 1670 aaKnown RBP21.47■■□□□ 1.03
SF3A3-203ENST00000461869 ZCRB1Q8TBF4 217 aaKnown RBP21.47■■□□□ 1.03
SF3A3-203ENST00000461869 TESK2Q96S53 571 aa21.46■■□□□ 1.03
SF3A3-203ENST00000461869 UTRNP46939 3433 aa21.45■■□□□ 1.02
SF3A3-203ENST00000461869 CHD4Q14839 1912 aa21.45■■□□□ 1.02
SF3A3-203ENST00000461869 ST20-MTHFSA0A0A6YYL1 179 aa21.45■■□□□ 1.02
SF3A3-203ENST00000461869 HSPA5P11021 654 aaKnown RBP21.45■■□□□ 1.02
SF3A3-203ENST00000461869 PELP1Q8IZL8 1130 aaKnown RBP21.44■■□□□ 1.02
SF3A3-203ENST00000461869 QSER1Q2KHR3 1735 aa21.43■■□□□ 1.02
SF3A3-203ENST00000461869 SLC24A1O60721 1099 aa21.43■■□□□ 1.02
SF3A3-203ENST00000461869 C1QTNF8P60827 252 aa21.43■■□□□ 1.02
SF3A3-203ENST00000461869 NSD2O96028 1365 aa21.43■■□□□ 1.02
SF3A3-203ENST00000461869 CCNL1Q9UK58 526 aaPredicted RBP21.42■■□□□ 1.02
SF3A3-203ENST00000461869 DOT1LQ8TEK3 1739 aa21.41■■□□□ 1.02
SF3A3-203ENST00000461869 MEGF6O75095 1541 aa21.41■■□□□ 1.02
SF3A3-203ENST00000461869 SENP3-EIF4A1A0A087X0R7 540 aa21.41■■□□□ 1.02
SF3A3-203ENST00000461869 MSH5O43196 834 aa21.4■■□□□ 1.02
SF3A3-203ENST00000461869 RRS1Q15050 365 aaKnown RBP21.4■■□□□ 1.02
SF3A3-203ENST00000461869 NLGN2Q8NFZ4 835 aa21.4■■□□□ 1.02
SF3A3-203ENST00000461869 NBPF6Q5VWK0 638 aa21.39■■□□□ 1.01
SF3A3-203ENST00000461869 NBPF4Q96M43 638 aa21.39■■□□□ 1.01
SF3A3-203ENST00000461869 LY75O60449 1722 aa21.38■■□□□ 1.01
SF3A3-203ENST00000461869 COL24A1Q17RW2 1714 aa21.38■■□□□ 1.01
SF3A3-203ENST00000461869 RTL1A6NKG5 1358 aa21.38■■□□□ 1.01
SF3A3-203ENST00000461869 RGPD2P0DJD1 1756 aa21.38■■□□□ 1.01
SF3A3-203ENST00000461869 CGNL1Q0VF96 1302 aa21.37■■□□□ 1.01
SF3A3-203ENST00000461869 TUBGCP6Q96RT7 1819 aa21.37■■□□□ 1.01
SF3A3-203ENST00000461869 FYB1O15117 783 aa21.37■■□□□ 1.01
SF3A3-203ENST00000461869 COL23A1Q86Y22 540 aaPredicted RBP21.37■■□□□ 1.01
SF3A3-203ENST00000461869 USHBP1Q8N6Y0 703 aa21.37■■□□□ 1.01
SF3A3-203ENST00000461869 RAPGEF4Q8WZA2 1011 aa21.37■■□□□ 1.01
SF3A3-203ENST00000461869 SHANK3Q9BYB0 1731 aa21.37■■□□□ 1.01
SF3A3-203ENST00000461869 GGNBP2Q9H3C7 697 aa21.36■■□□□ 1.01
SF3A3-203ENST00000461869 TATP17735 454 aaPredicted RBP21.35■■□□□ 1.01
SF3A3-203ENST00000461869 SMG6Q86US8 1419 aaKnown RBP21.35■■□□□ 1.01
SF3A3-203ENST00000461869 GIGYF1O75420 1035 aaPredicted RBP21.33■■□□□ 1.01
SF3A3-203ENST00000461869 MSL1Q68DK7 614 aa21.33■■□□□ 1.01
SF3A3-203ENST00000461869 GRIN3BO60391 1043 aa21.32■■□□□ 1
SF3A3-203ENST00000461869 TMF1P82094 1093 aa21.32■■□□□ 1
SF3A3-203ENST00000461869 YBX3P16989 372 aaKnown RBP eCLIP21.31■■□□□ 11e-7■■■□□ 16.2
SF3A3-203ENST00000461869 HSP90AB2PQ58FF8 381 aa21.31■■□□□ 1
SF3A3-203ENST00000461869 PCDH11XQ9BZA7 1347 aa21.3■■□□□ 1
SF3A3-203ENST00000461869 PCDH11YQ9BZA8 1340 aa21.3■■□□□ 1
SF3A3-203ENST00000461869 HMGB2P26583 209 aaKnown RBP21.3■■□□□ 1
SF3A3-203ENST00000461869 INSRP06213 1382 aa21.3■■□□□ 1
SF3A3-203ENST00000461869 DIEXFQ68CQ4 756 aaKnown RBP21.29■■□□□ 1
SF3A3-203ENST00000461869 MPRIPQ6WCQ1 1025 aa21.29■■□□□ 1
SF3A3-203ENST00000461869 PALLDQ8WX93 1383 aa21.28■■□□□ 1
SF3A3-203ENST00000461869 FLAD1Q8NFF5 587 aa21.28■■□□□ 1
SF3A3-203ENST00000461869 FLT4P35916 1363 aa21.27■■□□□ 1
SF3A3-203ENST00000461869 CD2APQ9Y5K6 639 aa21.26■□□□□ 0.99
SF3A3-203ENST00000461869 KIF24Q5T7B8 1368 aa21.25■□□□□ 0.99
SF3A3-203ENST00000461869 C5P01031 1676 aa21.25■□□□□ 0.99
SF3A3-203ENST00000461869 CYP27B1O15528 508 aa21.25■□□□□ 0.99
SF3A3-203ENST00000461869 CDCA8Q53HL2 280 aa21.24■□□□□ 0.99
SF3A3-203ENST00000461869 SMARCC1Q92922 1105 aaPredicted RBP21.24■□□□□ 0.99
SF3A3-203ENST00000461869 AK7Q96M32 723 aa21.23■□□□□ 0.99
SF3A3-203ENST00000461869 WASHC2AQ641Q2 1341 aa21.23■□□□□ 0.99
SF3A3-203ENST00000461869 CARD14Q9BXL6 1004 aa21.21■□□□□ 0.99
SF3A3-203ENST00000461869 EMILIN1Q9Y6C2 1016 aa21.21■□□□□ 0.99
SF3A3-203ENST00000461869 PPM1GO15355 546 aaPredicted RBP21.2■□□□□ 0.98
SF3A3-203ENST00000461869 PIGBQ92521 554 aa21.2■□□□□ 0.98
SF3A3-203ENST00000461869 KIF7Q2M1P5 1343 aa21.2■□□□□ 0.98
SF3A3-203ENST00000461869 KIF20BQ96Q89 1820 aa21.2■□□□□ 0.98
SF3A3-203ENST00000461869 PHF14O94880 888 aa21.19■□□□□ 0.98
SF3A3-203ENST00000461869 AMIGO3Q86WK7 504 aa21.19■□□□□ 0.98
SF3A3-203ENST00000461869 GOLGB1Q14789 3259 aaKnown RBP21.19■□□□□ 0.98
SF3A3-203ENST00000461869 C4BP0C0L5 1744 aa21.18■□□□□ 0.98
SF3A3-203ENST00000461869 TAF1LQ8IZX4 1826 aa21.18■□□□□ 0.98
SF3A3-203ENST00000461869 NKX1-1Q15270 411 aaPredicted RBP21.18■□□□□ 0.98
SF3A3-203ENST00000461869 SMIM5Q71RC9 77 aa21.18■□□□□ 0.98
SF3A3-203ENST00000461869 SPG7Q9UQ90 795 aa21.18■□□□□ 0.98
SF3A3-203ENST00000461869 ATP10DQ9P241 1426 aa21.18■□□□□ 0.98
SF3A3-203ENST00000461869 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.17■□□□□ 0.98
SF3A3-203ENST00000461869 TOGARAM1Q9Y4F4 1720 aa21.17■□□□□ 0.98
SF3A3-203ENST00000461869 NSD3Q9BZ95 1437 aa21.16■□□□□ 0.98
SF3A3-203ENST00000461869 LOC102724428A0A0B4J2F2 783 aa21.15■□□□□ 0.98
SF3A3-203ENST00000461869 SIK1P57059 783 aa21.15■□□□□ 0.98
SF3A3-203ENST00000461869 DDX10Q13206 875 aaKnown RBP21.15■□□□□ 0.98
SF3A3-203ENST00000461869 GPBP1L1Q9HC44 474 aaPredicted RBP21.15■□□□□ 0.98
SF3A3-203ENST00000461869 ITGB4P16144 1822 aa21.15■□□□□ 0.98
SF3A3-203ENST00000461869 PKD1L3Q7Z443 1732 aa21.15■□□□□ 0.98
SF3A3-203ENST00000461869 NCAPD2Q15021 1401 aa21.14■□□□□ 0.98
SF3A3-203ENST00000461869 SSFA2P28290 1259 aa21.14■□□□□ 0.97
SF3A3-203ENST00000461869 IGSF1Q8N6C5 1336 aa21.13■□□□□ 0.97
SF3A3-203ENST00000461869 LINC00116Q8NCU8 138 aa21.13■□□□□ 0.97
SF3A3-203ENST00000461869 EYA1Q99502 592 aa21.13■□□□□ 0.97
SF3A3-203ENST00000461869 TMOD3Q9NYL9 352 aa21.13■□□□□ 0.97
SF3A3-203ENST00000461869 WWC3Q9ULE0 1092 aa21.13■□□□□ 0.97
SF3A3-203ENST00000461869 ZNF526Q8TF50 670 aaPredicted RBP21.12■□□□□ 0.97
SF3A3-203ENST00000461869 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.12■□□□□ 0.978e-7■■■■□ 23.1
SF3A3-203ENST00000461869 ASAP1Q9ULH1 1129 aa21.12■□□□□ 0.97
SF3A3-203ENST00000461869 UBR3Q6ZT12 1888 aa21.1■□□□□ 0.97
SF3A3-203ENST00000461869 GNPATO15228 680 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms