RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 EMILIN1Q9Y6C2 1016 aa17.78■□□□□ 0.44
CHD3-206ENST00000452447 MAP2P11137 1827 aaKnown RBP17.78■□□□□ 0.44
CHD3-206ENST00000452447 SPON1Q9HCB6 807 aa17.77■□□□□ 0.44
CHD3-206ENST00000452447 STK32BQ9NY57 414 aa17.77■□□□□ 0.44
CHD3-206ENST00000452447 TATP17735 454 aaPredicted RBP17.76■□□□□ 0.43
CHD3-206ENST00000452447 SYTL4Q96C24 671 aaPredicted RBP17.76■□□□□ 0.43
CHD3-206ENST00000452447 MEGF6O75095 1541 aa17.76■□□□□ 0.43
CHD3-206ENST00000452447 SLC15A2Q16348 729 aa17.74■□□□□ 0.43
CHD3-206ENST00000452447 PPP1R1BQ9UD71 204 aaPredicted RBP17.74■□□□□ 0.43
CHD3-206ENST00000452447 PANK3Q9H999 370 aa17.74■□□□□ 0.43
CHD3-206ENST00000452447 SHANK3Q9BYB0 1731 aa17.73■□□□□ 0.43
CHD3-206ENST00000452447 PRIM1P49642 420 aaKnown RBP17.73■□□□□ 0.43
CHD3-206ENST00000452447 TNNT2P45379 298 aaPredicted RBP17.72■□□□□ 0.43
CHD3-206ENST00000452447 WASHC2AQ641Q2 1341 aa17.71■□□□□ 0.43
CHD3-206ENST00000452447 DOT1LQ8TEK3 1739 aa17.71■□□□□ 0.43
CHD3-206ENST00000452447 ANKRD26Q9UPS8 1709 aa17.71■□□□□ 0.43
CHD3-206ENST00000452447 POLKQ9UBT6 870 aa17.7■□□□□ 0.42
CHD3-206ENST00000452447 PCDH11XQ9BZA7 1347 aa17.7■□□□□ 0.42
CHD3-206ENST00000452447 PCDH11YQ9BZA8 1340 aa17.7■□□□□ 0.42
CHD3-206ENST00000452447 SLC27A3Q5K4L6 730 aa17.7■□□□□ 0.42
CHD3-206ENST00000452447 PDGFDQ9GZP0 370 aaPredicted RBP17.7■□□□□ 0.42
CHD3-206ENST00000452447 CASZ1Q86V15 1759 aa17.69■□□□□ 0.42
CHD3-206ENST00000452447 ZBTB7AO95365 584 aa17.69■□□□□ 0.42
CHD3-206ENST00000452447 LRRC4BQ9NT99 713 aa17.68■□□□□ 0.42
CHD3-206ENST00000452447 KNSTRNQ9Y448 316 aa17.66■□□□□ 0.42
CHD3-206ENST00000452447 NSD2O96028 1365 aa17.66■□□□□ 0.42
CHD3-206ENST00000452447 EYA1Q99502 592 aa17.66■□□□□ 0.42
CHD3-206ENST00000452447 ATF5Q9Y2D1 282 aaPredicted RBP17.66■□□□□ 0.42
CHD3-206ENST00000452447 PAPPAQ13219 1627 aa17.65■□□□□ 0.42
CHD3-206ENST00000452447 MORC1Q86VD1 984 aa17.65■□□□□ 0.42
CHD3-206ENST00000452447 MTFR1LQ9H019 292 aa17.65■□□□□ 0.42
CHD3-206ENST00000452447 SPG7Q9UQ90 795 aa17.65■□□□□ 0.42
CHD3-206ENST00000452447 CYP27B1O15528 508 aa17.64■□□□□ 0.41
CHD3-206ENST00000452447 KCNQ4P56696 695 aa17.63■□□□□ 0.41
CHD3-206ENST00000452447 EIF4A2Q14240 407 aaKnown RBP17.63■□□□□ 0.41
CHD3-206ENST00000452447 ZNF827Q17R98 1081 aa17.63■□□□□ 0.41
CHD3-206ENST00000452447 CCNL1Q9UK58 526 aaPredicted RBP17.63■□□□□ 0.41
CHD3-206ENST00000452447 NCAPD2Q15021 1401 aa17.63■□□□□ 0.41
CHD3-206ENST00000452447 LY75O60449 1722 aa17.63■□□□□ 0.41
CHD3-206ENST00000452447 PKD1L3Q7Z443 1732 aa17.63■□□□□ 0.41
CHD3-206ENST00000452447 MPRIPQ6WCQ1 1025 aa17.62■□□□□ 0.41
CHD3-206ENST00000452447 PTGER2P43116 358 aa17.62■□□□□ 0.41
CHD3-206ENST00000452447 AKT1S1Q96B36 256 aa17.62■□□□□ 0.41
CHD3-206ENST00000452447 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.62■□□□□ 0.41
CHD3-206ENST00000452447 KIF7Q2M1P5 1343 aa17.61■□□□□ 0.41
CHD3-206ENST00000452447 DCAF8L1A6NGE4 600 aa17.61■□□□□ 0.41
CHD3-206ENST00000452447 TFCP2L1Q9NZI6 479 aa17.61■□□□□ 0.41
CHD3-206ENST00000452447 ITGB4P16144 1822 aa17.6■□□□□ 0.41
CHD3-206ENST00000452447 HMGB2P26583 209 aaKnown RBP17.59■□□□□ 0.41
CHD3-206ENST00000452447 NKX1-1Q15270 411 aaPredicted RBP17.58■□□□□ 0.41
CHD3-206ENST00000452447 QSER1Q2KHR3 1735 aa17.58■□□□□ 0.4
CHD3-206ENST00000452447 IFNL2Q8IZJ0 200 aa17.57■□□□□ 0.4
CHD3-206ENST00000452447 SLC16A10Q8TF71 515 aa17.57■□□□□ 0.4
CHD3-206ENST00000452447 PALLDQ8WX93 1383 aa17.57■□□□□ 0.4
CHD3-206ENST00000452447 SMARCC1Q92922 1105 aaPredicted RBP17.57■□□□□ 0.4
CHD3-206ENST00000452447 PNPLA7Q6ZV29 1317 aa17.57■□□□□ 0.4
CHD3-206ENST00000452447 IGSF1Q8N6C5 1336 aa17.57■□□□□ 0.4
CHD3-206ENST00000452447 TOGARAM1Q9Y4F4 1720 aa17.56■□□□□ 0.4
CHD3-206ENST00000452447 PHKG2P15735 406 aa17.56■□□□□ 0.4
CHD3-206ENST00000452447 AMER1Q5JTC6 1135 aaPredicted RBP17.56■□□□□ 0.4
CHD3-206ENST00000452447 UTRNP46939 3433 aa17.55■□□□□ 0.4
CHD3-206ENST00000452447 PIGBQ92521 554 aa17.55■□□□□ 0.4
CHD3-206ENST00000452447 SGIP1Q9BQI5 828 aa17.55■□□□□ 0.4
CHD3-206ENST00000452447 TMOD3Q9NYL9 352 aa17.55■□□□□ 0.4
CHD3-206ENST00000452447 PLEKHG2Q9H7P9 1386 aa17.55■□□□□ 0.4
CHD3-206ENST00000452447 TUBGCP6Q96RT7 1819 aa17.55■□□□□ 0.4
CHD3-206ENST00000452447 ARXQ96QS3 562 aa17.54■□□□□ 0.4
CHD3-206ENST00000452447 FHDC1Q9C0D6 1143 aaPredicted RBP17.54■□□□□ 0.4
CHD3-206ENST00000452447 MSH5O43196 834 aa17.53■□□□□ 0.4
CHD3-206ENST00000452447 POLD1P28340 1107 aa17.53■□□□□ 0.4
CHD3-206ENST00000452447 PLEKHO1Q53GL0 409 aaPredicted RBP17.53■□□□□ 0.4
CHD3-206ENST00000452447 C5P01031 1676 aa17.53■□□□□ 0.4
CHD3-206ENST00000452447 SYT17Q9BSW7 474 aa17.53■□□□□ 0.4
CHD3-206ENST00000452447 TAF1LQ8IZX4 1826 aa17.52■□□□□ 0.4
CHD3-206ENST00000452447 AMOTQ4VCS5 1084 aa17.52■□□□□ 0.39
CHD3-206ENST00000452447 HSP90AB1P08238 724 aaKnown RBP17.51■□□□□ 0.39
CHD3-206ENST00000452447 PER1O15534 1290 aaPredicted RBP17.5■□□□□ 0.39
CHD3-206ENST00000452447 CC2D1BQ5T0F9 858 aaKnown RBP17.5■□□□□ 0.39
CHD3-206ENST00000452447 SULT6B1Q6IMI4 303 aa17.5■□□□□ 0.39
CHD3-206ENST00000452447 MTHFSP49914 203 aa17.49■□□□□ 0.39
CHD3-206ENST00000452447 ZNF530Q6P9A1 599 aaPredicted RBP17.49■□□□□ 0.39
CHD3-206ENST00000452447 COL23A1Q86Y22 540 aaPredicted RBP17.49■□□□□ 0.39
CHD3-206ENST00000452447 AEBP1Q8IUX7 1158 aa17.49■□□□□ 0.39
CHD3-206ENST00000452447 FLAD1Q8NFF5 587 aa17.49■□□□□ 0.39
CHD3-206ENST00000452447 LOC102724428A0A0B4J2F2 783 aa17.49■□□□□ 0.39
CHD3-206ENST00000452447 IL13P35225 146 aa17.49■□□□□ 0.39
CHD3-206ENST00000452447 SIK1P57059 783 aa17.49■□□□□ 0.39
CHD3-206ENST00000452447 DCAF5Q96JK2 942 aa17.49■□□□□ 0.39
CHD3-206ENST00000452447 AK7Q96M32 723 aa17.49■□□□□ 0.39
CHD3-206ENST00000452447 ASAP1Q9ULH1 1129 aa17.49■□□□□ 0.39
CHD3-206ENST00000452447 ERVV-2B6SEH9 535 aa17.48■□□□□ 0.39
CHD3-206ENST00000452447 C1orf141Q5JVX7 400 aa17.48■□□□□ 0.39
CHD3-206ENST00000452447 KLHL34Q8N239 644 aa17.48■□□□□ 0.39
CHD3-206ENST00000452447 YY1P25490 414 aa17.47■□□□□ 0.39
CHD3-206ENST00000452447 GOLGB1Q14789 3259 aaKnown RBP17.47■□□□□ 0.39
CHD3-206ENST00000452447 C4BP0C0L5 1744 aa17.47■□□□□ 0.39
CHD3-206ENST00000452447 ATP6V1AP38606 617 aa17.46■□□□□ 0.39
CHD3-206ENST00000452447 CNGB1Q14028 1251 aaPredicted RBP17.46■□□□□ 0.39
CHD3-206ENST00000452447 MAP3K5Q99683 1374 aa17.46■□□□□ 0.39
CHD3-206ENST00000452447 COL24A1Q17RW2 1714 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms