RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 FCHSD2O94868 740 aa9.14□□□□□ -0.95
NEDD9-204ENST00000448183 CFAP100Q494V2 611 aa9.14□□□□□ -0.95
NEDD9-204ENST00000448183 ZSCAN25Q6NSZ9 544 aa9.14□□□□□ -0.95
NEDD9-204ENST00000448183 LRRFIP2Q9Y608 721 aaKnown RBP9.14□□□□□ -0.95
NEDD9-204ENST00000448183 ERICH4A6NGS2 130 aa9.14□□□□□ -0.95
NEDD9-204ENST00000448183 TANGO6Q9C0B7 1094 aa9.14□□□□□ -0.95
NEDD9-204ENST00000448183 CENPHQ9H3R5 247 aa9.14□□□□□ -0.95
NEDD9-204ENST00000448183 ATF3P18847 181 aa9.14□□□□□ -0.95
NEDD9-204ENST00000448183 CCDC183Q5T5S1 534 aa9.14□□□□□ -0.95
NEDD9-204ENST00000448183 AFAP1Q8N556 730 aa9.14□□□□□ -0.95
NEDD9-204ENST00000448183 KIF18AQ8NI77 898 aa9.14□□□□□ -0.95
NEDD9-204ENST00000448183 SCAND2PQ9GZW5 306 aaPredicted RBP9.14□□□□□ -0.95
NEDD9-204ENST00000448183 RAD54L2Q9Y4B4 1467 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 CASTP20810 708 aaKnown RBP9.13□□□□□ -0.95
NEDD9-204ENST00000448183 FAM193AP78312 1265 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 CNKSR2Q8WXI2 1034 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 CABP1Q9NZU7 370 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 CUL7Q14999 1698 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.13□□□□□ -0.95
NEDD9-204ENST00000448183 SEPT7Q16181 437 aaKnown RBP9.13□□□□□ -0.95
NEDD9-204ENST00000448183 FERMT3Q86UX7 667 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 STK11IPQ8N1F8 1099 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 PDCL3Q9H2J4 239 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 UNC13AQ9UPW8 1703 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 TMPOP42166 694 aaKnown RBP9.13□□□□□ -0.95
NEDD9-204ENST00000448183 NUP133Q8WUM0 1156 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 ANKRD30BQ9BXX2 1392 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 FAM177BA6PVY3 158 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 ZSCAN12O43309 604 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 ZNF530Q6P9A1 599 aaPredicted RBP9.13□□□□□ -0.95
NEDD9-204ENST00000448183 CRACR2AQ9BSW2 395 aa9.13□□□□□ -0.95
NEDD9-204ENST00000448183 TAX1BP1Q86VP1 789 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 CDK19Q9BWU1 502 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 TBC1D2Q9BYX2 928 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 ANO10Q9NW15 660 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 TATP17735 454 aaPredicted RBP9.12□□□□□ -0.95
NEDD9-204ENST00000448183 NFE2L2Q16236 605 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 CCDC57Q2TAC2 916 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 SOGA3Q5TF21 947 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 WASF1Q92558 559 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 ZHX3Q9H4I2 956 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 CEP126Q9P2H0 1117 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 EXOC6BQ9Y2D4 811 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 WDR97A6NE52 1622 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 EIF5P55010 431 aaKnown RBP9.12□□□□□ -0.95
NEDD9-204ENST00000448183 XPCQ01831 940 aaPredicted RBP9.12□□□□□ -0.95
NEDD9-204ENST00000448183 ENOX2Q16206 610 aaKnown RBP9.12□□□□□ -0.95
NEDD9-204ENST00000448183 ANKRD18AQ8IVF6 992 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 DDX11Q96FC9 970 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 BMP2KQ9NSY1 1161 aaPredicted RBP9.12□□□□□ -0.95
NEDD9-204ENST00000448183 GLRX3O76003 335 aaKnown RBP9.12□□□□□ -0.95
NEDD9-204ENST00000448183 FKBP4Q02790 459 aaKnown RBP eCLIP9.12□□□□□ -0.95
NEDD9-204ENST00000448183 CAMK4Q16566 473 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 KIAA1328Q86T90 577 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 CCDC83Q8IWF9 413 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 CCDC148Q8NFR7 591 aa9.12□□□□□ -0.95
NEDD9-204ENST00000448183 ABCA10Q8WWZ4 1543 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 MX1P20591 662 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 RARSP54136 660 aaKnown RBP9.11□□□□□ -0.95
NEDD9-204ENST00000448183 CBX1P83916 185 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 KIF1BPQ96EK5 621 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 SH2B1Q9NRF2 756 aaPredicted RBP9.11□□□□□ -0.95
NEDD9-204ENST00000448183 ARHGAP5Q13017 1502 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 CYB5RLQ6IPT4 315 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 TAF4BQ92750 862 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 TNPO1Q92973 898 aaKnown RBP9.11□□□□□ -0.95
NEDD9-204ENST00000448183 UBAC1Q9BSL1 405 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 C9orf84Q5VXU9 1444 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 PLEKHH1Q9ULM0 1364 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 SSFA2P28290 1259 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 MCM5P33992 734 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 RBM42Q9BTD8 480 aaKnown RBP9.11□□□□□ -0.95
NEDD9-204ENST00000448183 PRDM2Q13029 1718 aa9.11□□□□□ -0.95
NEDD9-204ENST00000448183 C20orf194Q5TEA3 1177 aa9.1□□□□□ -0.95
NEDD9-204ENST00000448183 ATAD2Q6PL18 1390 aa9.1□□□□□ -0.95
NEDD9-204ENST00000448183 URI1O94763 535 aaPredicted RBP9.1□□□□□ -0.95
NEDD9-204ENST00000448183 CGNQ9P2M7 1197 aaKnown RBP9.1□□□□□ -0.95
NEDD9-204ENST00000448183 USP25Q9UHP3 1055 aa9.1□□□□□ -0.95
NEDD9-204ENST00000448183 CEP131Q9UPN4 1083 aa9.1□□□□□ -0.95
NEDD9-204ENST00000448183 POLA1P09884 1462 aaPredicted RBP9.1□□□□□ -0.95
NEDD9-204ENST00000448183 ANKRD62A6NC57 917 aa9.1□□□□□ -0.95
NEDD9-204ENST00000448183 ALDH1L2Q3SY69 923 aa9.1□□□□□ -0.95
NEDD9-204ENST00000448183 NUTM1Q86Y26 1132 aa9.1□□□□□ -0.95
NEDD9-204ENST00000448183 SSH1Q8WYL5 1049 aa9.1□□□□□ -0.95
NEDD9-204ENST00000448183 NEMFO60524 1076 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 IMMTQ16891 758 aaKnown RBP9.09□□□□□ -0.95
NEDD9-204ENST00000448183 MAP9Q49MG5 647 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 TXNDC2Q86VQ3 553 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 INCENPQ9NQS7 918 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 PLEKHH2Q8IVE3 1493 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 SHTN1A0MZ66 631 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 CTAGE5O15320 804 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 RAB11FIP3O75154 756 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 TNNT1P13805 278 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 TDO2P48775 406 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 TMEM132AQ24JP5 1023 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 CALCOCO1Q9P1Z2 691 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 CLIP2Q9UDT6 1046 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 KIF5CO60282 957 aa9.09□□□□□ -0.95
NEDD9-204ENST00000448183 SSBP05455 408 aaKnown RBP eCLIP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms