RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 NBPF6Q5VWK0 638 aa27.31■■□□□ 1.96
SHROOM1-204ENST00000440118 NBPF4Q96M43 638 aa27.31■■□□□ 1.96
SHROOM1-204ENST00000440118 PANK3Q9H999 370 aa27.3■■□□□ 1.96
SHROOM1-204ENST00000440118 ZCRB1Q8TBF4 217 aaKnown RBP27.29■■□□□ 1.96
SHROOM1-204ENST00000440118 TNNT2P45379 298 aaPredicted RBP27.28■■□□□ 1.96
SHROOM1-204ENST00000440118 TATP17735 454 aaPredicted RBP27.27■■□□□ 1.96
SHROOM1-204ENST00000440118 TXNRD1Q16881 649 aa27.27■■□□□ 1.96
SHROOM1-204ENST00000440118 SYTL4Q96C24 671 aaPredicted RBP27.27■■□□□ 1.96
SHROOM1-204ENST00000440118 NSD2O96028 1365 aa27.24■■□□□ 1.95
SHROOM1-204ENST00000440118 STK32BQ9NY57 414 aa27.24■■□□□ 1.95
SHROOM1-204ENST00000440118 ANO8Q9HCE9 1232 aaPredicted RBP27.23■■□□□ 1.95
SHROOM1-204ENST00000440118 PROM2Q8N271 834 aa27.21■■□□□ 1.95
SHROOM1-204ENST00000440118 WASHC2AQ641Q2 1341 aa27.2■■□□□ 1.95
SHROOM1-204ENST00000440118 PCDH11XQ9BZA7 1347 aa27.2■■□□□ 1.95
SHROOM1-204ENST00000440118 PCDH11YQ9BZA8 1340 aa27.2■■□□□ 1.95
SHROOM1-204ENST00000440118 KNSTRNQ9Y448 316 aa27.2■■□□□ 1.94
SHROOM1-204ENST00000440118 POLKQ9UBT6 870 aa27.19■■□□□ 1.94
SHROOM1-204ENST00000440118 PKD1L3Q7Z443 1732 aa27.19■■□□□ 1.94
SHROOM1-204ENST00000440118 CASZ1Q86V15 1759 aa27.18■■□□□ 1.94
SHROOM1-204ENST00000440118 KIF7Q2M1P5 1343 aa27.17■■□□□ 1.94
SHROOM1-204ENST00000440118 PRIM1P49642 420 aaKnown RBP27.17■■□□□ 1.94
SHROOM1-204ENST00000440118 MORC1Q86VD1 984 aa27.17■■□□□ 1.94
SHROOM1-204ENST00000440118 SPON1Q9HCB6 807 aa27.17■■□□□ 1.94
SHROOM1-204ENST00000440118 PPP1R1BQ9UD71 204 aaPredicted RBP27.17■■□□□ 1.94
SHROOM1-204ENST00000440118 SLC15A2Q16348 729 aa27.14■■□□□ 1.94
SHROOM1-204ENST00000440118 PAPPAQ13219 1627 aa27.14■■□□□ 1.94
SHROOM1-204ENST00000440118 LY75O60449 1722 aa27.12■■□□□ 1.93
SHROOM1-204ENST00000440118 NCAPD2Q15021 1401 aa27.11■■□□□ 1.93
SHROOM1-204ENST00000440118 EYA1Q99502 592 aa27.11■■□□□ 1.93
SHROOM1-204ENST00000440118 SPG7Q9UQ90 795 aa27.11■■□□□ 1.93
SHROOM1-204ENST00000440118 EIF4A2Q14240 407 aaKnown RBP27.1■■□□□ 1.93
SHROOM1-204ENST00000440118 SLC27A3Q5K4L6 730 aa27.1■■□□□ 1.93
SHROOM1-204ENST00000440118 ITGB4P16144 1822 aa27.09■■□□□ 1.93
SHROOM1-204ENST00000440118 TOGARAM1Q9Y4F4 1720 aa27.08■■□□□ 1.93
SHROOM1-204ENST00000440118 ZBTB7AO95365 584 aa27.08■■□□□ 1.93
SHROOM1-204ENST00000440118 PDGFDQ9GZP0 370 aaPredicted RBP27.06■■□□□ 1.92
SHROOM1-204ENST00000440118 CYP27B1O15528 508 aa27.05■■□□□ 1.92
SHROOM1-204ENST00000440118 LRRC4BQ9NT99 713 aa27.05■■□□□ 1.92
SHROOM1-204ENST00000440118 MPRIPQ6WCQ1 1025 aa27.04■■□□□ 1.92
SHROOM1-204ENST00000440118 CCNL1Q9UK58 526 aaPredicted RBP27.04■■□□□ 1.92
SHROOM1-204ENST00000440118 QSER1Q2KHR3 1735 aa27.04■■□□□ 1.92
SHROOM1-204ENST00000440118 KCNQ4P56696 695 aa27.02■■□□□ 1.92
SHROOM1-204ENST00000440118 ZNF827Q17R98 1081 aa27.02■■□□□ 1.92
SHROOM1-204ENST00000440118 TUBGCP6Q96RT7 1819 aa27.02■■□□□ 1.92
SHROOM1-204ENST00000440118 IGSF1Q8N6C5 1336 aa27.01■■□□□ 1.91
SHROOM1-204ENST00000440118 AMER1Q5JTC6 1135 aaPredicted RBP27.01■■□□□ 1.91
SHROOM1-204ENST00000440118 ATF5Q9Y2D1 282 aaPredicted RBP27.01■■□□□ 1.91
SHROOM1-204ENST00000440118 C5P01031 1676 aa27.01■■□□□ 1.91
SHROOM1-204ENST00000440118 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27■■□□□ 1.91
SHROOM1-204ENST00000440118 MTFR1LQ9H019 292 aa26.99■■□□□ 1.91
SHROOM1-204ENST00000440118 TFCP2L1Q9NZI6 479 aa26.99■■□□□ 1.91
SHROOM1-204ENST00000440118 PALLDQ8WX93 1383 aa26.98■■□□□ 1.91
SHROOM1-204ENST00000440118 CC2D1BQ5T0F9 858 aaKnown RBP26.98■■□□□ 1.91
SHROOM1-204ENST00000440118 IFNL2Q8IZJ0 200 aa26.98■■□□□ 1.91
SHROOM1-204ENST00000440118 CNGB1Q14028 1251 aaPredicted RBP26.97■■□□□ 1.91
SHROOM1-204ENST00000440118 PLEKHG2Q9H7P9 1386 aa26.97■■□□□ 1.91
SHROOM1-204ENST00000440118 AKT1S1Q96B36 256 aa26.96■■□□□ 1.91
SHROOM1-204ENST00000440118 TAF1LQ8IZX4 1826 aa26.95■■□□□ 1.91
SHROOM1-204ENST00000440118 SMARCC1Q92922 1105 aaPredicted RBP26.95■■□□□ 1.9
SHROOM1-204ENST00000440118 TMOD3Q9NYL9 352 aa26.95■■□□□ 1.9
SHROOM1-204ENST00000440118 DCAF8L1A6NGE4 600 aa26.94■■□□□ 1.9
SHROOM1-204ENST00000440118 PHKG2P15735 406 aa26.94■■□□□ 1.9
SHROOM1-204ENST00000440118 NKX1-1Q15270 411 aaPredicted RBP26.94■■□□□ 1.9
SHROOM1-204ENST00000440118 HMGB2P26583 209 aaKnown RBP26.93■■□□□ 1.9
SHROOM1-204ENST00000440118 PLEKHO1Q53GL0 409 aaPredicted RBP26.93■■□□□ 1.9
SHROOM1-204ENST00000440118 MSH5O43196 834 aa26.91■■□□□ 1.9
SHROOM1-204ENST00000440118 PTGER2P43116 358 aa26.91■■□□□ 1.9
SHROOM1-204ENST00000440118 SULT6B1Q6IMI4 303 aa26.91■■□□□ 1.9
SHROOM1-204ENST00000440118 ZNF530Q6P9A1 599 aaPredicted RBP26.91■■□□□ 1.9
SHROOM1-204ENST00000440118 PIGBQ92521 554 aa26.91■■□□□ 1.9
SHROOM1-204ENST00000440118 PNPLA7Q6ZV29 1317 aa26.9■■□□□ 1.9
SHROOM1-204ENST00000440118 HSP90AB1P08238 724 aaKnown RBP26.9■■□□□ 1.9
SHROOM1-204ENST00000440118 MTHFSP49914 203 aa26.9■■□□□ 1.9
SHROOM1-204ENST00000440118 AMOTQ4VCS5 1084 aa26.9■■□□□ 1.9
SHROOM1-204ENST00000440118 AEBP1Q8IUX7 1158 aa26.9■■□□□ 1.9
SHROOM1-204ENST00000440118 PER1O15534 1290 aaPredicted RBP26.89■■□□□ 1.9
SHROOM1-204ENST00000440118 C1orf141Q5JVX7 400 aa26.88■■□□□ 1.89
SHROOM1-204ENST00000440118 C4BP0C0L5 1744 aa26.87■■□□□ 1.89
SHROOM1-204ENST00000440118 POLD1P28340 1107 aa26.87■■□□□ 1.89
SHROOM1-204ENST00000440118 IL13P35225 146 aa26.87■■□□□ 1.89
SHROOM1-204ENST00000440118 SLC16A10Q8TF71 515 aa26.87■■□□□ 1.89
SHROOM1-204ENST00000440118 DCAF5Q96JK2 942 aa26.85■■□□□ 1.89
SHROOM1-204ENST00000440118 AK7Q96M32 723 aa26.85■■□□□ 1.89
SHROOM1-204ENST00000440118 ARXQ96QS3 562 aa26.85■■□□□ 1.89
SHROOM1-204ENST00000440118 NPC1L1Q9UHC9 1359 aa26.84■■□□□ 1.89
SHROOM1-204ENST00000440118 KLHL34Q8N239 644 aa26.84■■□□□ 1.89
SHROOM1-204ENST00000440118 KDRP35968 1356 aa26.84■■□□□ 1.89
SHROOM1-204ENST00000440118 FHDC1Q9C0D6 1143 aaPredicted RBP26.83■■□□□ 1.89
SHROOM1-204ENST00000440118 LOC102724428A0A0B4J2F2 783 aa26.82■■□□□ 1.88
SHROOM1-204ENST00000440118 DIAPH1O60610 1272 aaKnown RBP26.82■■□□□ 1.88
SHROOM1-204ENST00000440118 SIK1P57059 783 aa26.82■■□□□ 1.88
SHROOM1-204ENST00000440118 ERVV-2B6SEH9 535 aa26.81■■□□□ 1.88
SHROOM1-204ENST00000440118 ASAP1Q9ULH1 1129 aa26.81■■□□□ 1.88
SHROOM1-204ENST00000440118 HMOX1P09601 288 aa26.8■■□□□ 1.88
SHROOM1-204ENST00000440118 CABP4P57796 275 aa26.8■■□□□ 1.88
SHROOM1-204ENST00000440118 SGIP1Q9BQI5 828 aa26.8■■□□□ 1.88
SHROOM1-204ENST00000440118 UBR3Q6ZT12 1888 aa26.8■■□□□ 1.88
SHROOM1-204ENST00000440118 KDM6AO15550 1401 aaPredicted RBP26.8■■□□□ 1.88
SHROOM1-204ENST00000440118 COL24A1Q17RW2 1714 aa26.79■■□□□ 1.88
SHROOM1-204ENST00000440118 VIRMAQ69YN4 1812 aaKnown RBP26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms