RNA–Protein interactions for RNA: ENST00000439669.5

CPNE1-217, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 784 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-217ENST00000439669 PER1O15534 1290 aaPredicted RBP32.75■■■□□ 2.83
CPNE1-217ENST00000439669 PSDA5PKW4 1024 aaPredicted RBP32.74■■■□□ 2.83
CPNE1-217ENST00000439669 EIF4A2Q14240 407 aaKnown RBP32.74■■■□□ 2.83
CPNE1-217ENST00000439669 SHANK3Q9BYB0 1731 aa32.74■■■□□ 2.83
CPNE1-217ENST00000439669 PLSCR1O15162 318 aa32.73■■■□□ 2.83
CPNE1-217ENST00000439669 CC2D1BQ5T0F9 858 aaKnown RBP32.73■■■□□ 2.83
CPNE1-217ENST00000439669 EYA1Q99502 592 aa32.73■■■□□ 2.83
CPNE1-217ENST00000439669 NUP188Q5SRE5 1749 aa32.72■■■□□ 2.83
CPNE1-217ENST00000439669 NCAPD2Q15021 1401 aa32.72■■■□□ 2.83
CPNE1-217ENST00000439669 RGPD3A6NKT7 1758 aaPredicted RBP32.72■■■□□ 2.83
CPNE1-217ENST00000439669 RGPD4Q7Z3J3 1758 aa32.72■■■□□ 2.83
CPNE1-217ENST00000439669 KAT6BQ8WYB5 2073 aa32.7■■■□□ 2.82
CPNE1-217ENST00000439669 CNGB1Q14028 1251 aaPredicted RBP32.69■■■□□ 2.82
CPNE1-217ENST00000439669 R3HDM1Q15032 1099 aaKnown RBP32.68■■■□□ 2.82
CPNE1-217ENST00000439669 PCDH11XQ9BZA7 1347 aa32.67■■■□□ 2.82
CPNE1-217ENST00000439669 PCDH11YQ9BZA8 1340 aa32.67■■■□□ 2.82
CPNE1-217ENST00000439669 NBPF14Q5TI25 921 aa32.66■■■□□ 2.82
CPNE1-217ENST00000439669 SYTL4Q96C24 671 aaPredicted RBP32.65■■■□□ 2.82
CPNE1-217ENST00000439669 DOT1LQ8TEK3 1739 aa32.65■■■□□ 2.82
CPNE1-217ENST00000439669 BTAF1O14981 1849 aa32.64■■■□□ 2.82
CPNE1-217ENST00000439669 NPC1L1Q9UHC9 1359 aa32.63■■■□□ 2.81
CPNE1-217ENST00000439669 IGSF1Q8N6C5 1336 aa32.62■■■□□ 2.81
CPNE1-217ENST00000439669 PKD1L3Q7Z443 1732 aa32.62■■■□□ 2.81
CPNE1-217ENST00000439669 PRIM1P49642 420 aaKnown RBP32.61■■■□□ 2.81
CPNE1-217ENST00000439669 TXNRD1Q16881 649 aa32.61■■■□□ 2.81
CPNE1-217ENST00000439669 SPG7Q9UQ90 795 aa32.6■■■□□ 2.81
CPNE1-217ENST00000439669 MTHFSP49914 203 aa32.59■■■□□ 2.81
CPNE1-217ENST00000439669 PROM2Q8N271 834 aa32.59■■■□□ 2.81
CPNE1-217ENST00000439669 CYP27B1O15528 508 aa32.58■■■□□ 2.81
CPNE1-217ENST00000439669 ANO8Q9HCE9 1232 aaPredicted RBP32.54■■■□□ 2.8
CPNE1-217ENST00000439669 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.54■■■□□ 2.81e-6■■□□□ 12.2
CPNE1-217ENST00000439669 IL13P35225 146 aa32.53■■■□□ 2.8
CPNE1-217ENST00000439669 AEBP1Q8IUX7 1158 aa32.51■■■□□ 2.79
CPNE1-217ENST00000439669 PLEKHG2Q9H7P9 1386 aa32.5■■■□□ 2.79
CPNE1-217ENST00000439669 SULT6B1Q6IMI4 303 aa32.49■■■□□ 2.79
CPNE1-217ENST00000439669 STK32BQ9NY57 414 aa32.48■■■□□ 2.79
CPNE1-217ENST00000439669 IFNL2Q8IZJ0 200 aa32.47■■■□□ 2.79
CPNE1-217ENST00000439669 TOGARAM1Q9Y4F4 1720 aa32.46■■■□□ 2.79
CPNE1-217ENST00000439669 PHKG2P15735 406 aa32.46■■■□□ 2.79
CPNE1-217ENST00000439669 NKX1-1Q15270 411 aaPredicted RBP32.46■■■□□ 2.79
CPNE1-217ENST00000439669 LRP5O75197 1615 aa32.46■■■□□ 2.79
CPNE1-217ENST00000439669 DIAPH1O60610 1272 aaKnown RBP32.45■■■□□ 2.79
CPNE1-217ENST00000439669 PLEKHO1Q53GL0 409 aaPredicted RBP32.45■■■□□ 2.79
CPNE1-217ENST00000439669 MPRIPQ6WCQ1 1025 aa32.45■■■□□ 2.79
CPNE1-217ENST00000439669 SLC27A3Q5K4L6 730 aa32.43■■■□□ 2.78
CPNE1-217ENST00000439669 KDRP35968 1356 aa32.43■■■□□ 2.78
CPNE1-217ENST00000439669 AMOTQ4VCS5 1084 aa32.42■■■□□ 2.78
CPNE1-217ENST00000439669 LRRC4BQ9NT99 713 aa32.42■■■□□ 2.78
CPNE1-217ENST00000439669 SLC15A2Q16348 729 aa32.41■■■□□ 2.78
CPNE1-217ENST00000439669 ZNF530Q6P9A1 599 aaPredicted RBP32.41■■■□□ 2.78
CPNE1-217ENST00000439669 PAPPAQ13219 1627 aa32.4■■■□□ 2.78
CPNE1-217ENST00000439669 ITGB4P16144 1822 aa32.4■■■□□ 2.78
CPNE1-217ENST00000439669 HMOX1P09601 288 aa32.39■■■□□ 2.78
CPNE1-217ENST00000439669 COL3A1P02461 1466 aaPredicted RBP32.39■■■□□ 2.78
CPNE1-217ENST00000439669 LY75O60449 1722 aa32.39■■■□□ 2.78
CPNE1-217ENST00000439669 KCNQ4P56696 695 aa32.38■■■□□ 2.77
CPNE1-217ENST00000439669 CCNL1Q9UK58 526 aaPredicted RBP32.38■■■□□ 2.77
CPNE1-217ENST00000439669 PALLDQ8WX93 1383 aa32.36■■■□□ 2.77
CPNE1-217ENST00000439669 HSP90AB1P08238 724 aaKnown RBP32.36■■■□□ 2.77
CPNE1-217ENST00000439669 PIGBQ92521 554 aa32.36■■■□□ 2.77
CPNE1-217ENST00000439669 CFAP53Q96M91 514 aa32.36■■■□□ 2.77
CPNE1-217ENST00000439669 TMOD3Q9NYL9 352 aa32.36■■■□□ 2.77
CPNE1-217ENST00000439669 U2SURPO15042 1029 aaKnown RBP32.35■■■□□ 2.77
CPNE1-217ENST00000439669 C1orf141Q5JVX7 400 aa32.35■■■□□ 2.77
CPNE1-217ENST00000439669 PPP2R1AP30153 589 aa32.34■■■□□ 2.77
CPNE1-217ENST00000439669 ZEB1P37275 1124 aaPredicted RBP32.34■■■□□ 2.77
CPNE1-217ENST00000439669 ZNF827Q17R98 1081 aa32.34■■■□□ 2.77
CPNE1-217ENST00000439669 SMARCC1Q92922 1105 aaPredicted RBP32.33■■■□□ 2.77
CPNE1-217ENST00000439669 CASZ1Q86V15 1759 aa32.32■■■□□ 2.77
CPNE1-217ENST00000439669 DCAF5Q96JK2 942 aa32.32■■■□□ 2.76
CPNE1-217ENST00000439669 PDGFDQ9GZP0 370 aaPredicted RBP32.32■■■□□ 2.76
CPNE1-217ENST00000439669 SPON1Q9HCB6 807 aa32.3■■■□□ 2.76
CPNE1-217ENST00000439669 KDM6AO15550 1401 aaPredicted RBP32.29■■■□□ 2.76
CPNE1-217ENST00000439669 AKT1S1Q96B36 256 aa32.29■■■□□ 2.76
CPNE1-217ENST00000439669 SRCAPQ6ZRS2 3230 aa32.27■■■□□ 2.76
CPNE1-217ENST00000439669 ERVV-2B6SEH9 535 aa32.27■■■□□ 2.76
CPNE1-217ENST00000439669 ZBTB7AO95365 584 aa32.27■■■□□ 2.76
CPNE1-217ENST00000439669 DDX10Q13206 875 aaKnown RBP32.27■■■□□ 2.76
CPNE1-217ENST00000439669 ASAP1Q9ULH1 1129 aa32.25■■■□□ 2.75
CPNE1-217ENST00000439669 CABP4P57796 275 aa32.24■■■□□ 2.75
CPNE1-217ENST00000439669 TFCP2L1Q9NZI6 479 aa32.24■■■□□ 2.75
CPNE1-217ENST00000439669 NUDCQ9Y266 331 aa32.24■■■□□ 2.75
CPNE1-217ENST00000439669 AKAP4Q5JQC9 854 aa32.23■■■□□ 2.75
CPNE1-217ENST00000439669 C5P01031 1676 aa32.22■■■□□ 2.75
CPNE1-217ENST00000439669 PPP1R1BQ9UD71 204 aaPredicted RBP32.21■■■□□ 2.75
CPNE1-217ENST00000439669 LOC102724428A0A0B4J2F2 783 aa32.2■■■□□ 2.75
CPNE1-217ENST00000439669 HMGB2P26583 209 aaKnown RBP32.2■■■□□ 2.75
CPNE1-217ENST00000439669 SIK1P57059 783 aa32.2■■■□□ 2.75
CPNE1-217ENST00000439669 MTHFSDQ2M296 383 aaKnown RBP32.2■■■□□ 2.75
CPNE1-217ENST00000439669 ATG3Q9NT62 314 aa32.2■■■□□ 2.75
CPNE1-217ENST00000439669 ATF5Q9Y2D1 282 aaPredicted RBP32.2■■■□□ 2.75
CPNE1-217ENST00000439669 QSER1Q2KHR3 1735 aa32.18■■■□□ 2.74
CPNE1-217ENST00000439669 MTFR1LQ9H019 292 aa32.18■■■□□ 2.74
CPNE1-217ENST00000439669 TUBGCP6Q96RT7 1819 aa32.18■■■□□ 2.74
CPNE1-217ENST00000439669 PNPLA7Q6ZV29 1317 aa32.18■■■□□ 2.74
CPNE1-217ENST00000439669 TAF1LQ8IZX4 1826 aa32.16■■■□□ 2.74
CPNE1-217ENST00000439669 U2AF1L5P0DN76 240 aaPredicted RBP32.16■■■□□ 2.74
CPNE1-217ENST00000439669 U2AF1Q01081 240 aaKnown RBP eCLIP32.16■■■□□ 2.742e-6■□□□□ 8.5
CPNE1-217ENST00000439669 SCN11AQ9UI33 1791 aa32.16■■■□□ 2.74
CPNE1-217ENST00000439669 PRKAR2BP31323 418 aa32.14■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms