RNA–Protein interactions for RNA: ENST00000439669.5

CPNE1-217, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 784 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-217ENST00000439669 XPO5Q9HAV4 1204 aaKnown RBP eCLIP29.15■■■□□ 2.269e-8■■■■■ 116.8
CPNE1-217ENST00000439669 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP22.5■■□□□ 1.193e-13■■■■■ 108.9
CPNE1-217ENST00000439669 SF3B1O75533 1304 aaKnown RBP eCLIP26.26■■□□□ 1.793e-7■■■■■ 90.2
CPNE1-217ENST00000439669 CSTF2P33240 577 aaKnown RBP eCLIP23.55■■□□□ 1.362e-45■■■■■ 66.1
CPNE1-217ENST00000439669 BUD13Q9BRD0 619 aaKnown RBP eCLIP27.41■■□□□ 1.985e-13■■■■■ 64.1
CPNE1-217ENST00000439669 UTP3Q9NQZ2 479 aaKnown RBP eCLIP25.65■■□□□ 1.71e-6■■■■■ 61.4
CPNE1-217ENST00000439669 WDR3Q9UNX4 943 aaKnown RBP eCLIP25.26■■□□□ 1.632e-6■■■■■ 55.4
CPNE1-217ENST00000439669 EFTUD2Q15029 972 aaKnown RBP eCLIP22.89■■□□□ 1.254e-8■■■■■ 37.6
CPNE1-217ENST00000439669 PUM2Q8TB72 1066 aaKnown RBP eCLIP22.1■■□□□ 1.138e-8■■■■■ 32.7
CPNE1-217ENST00000439669 RBFOX2O43251 390 aaKnown RBP eCLIP18.56■□□□□ 0.563e-14■■■■■ 31.7
CPNE1-217ENST00000439669 DDX24Q9GZR7 859 aaKnown RBP eCLIP29.1■■■□□ 2.256e-7■■■■■ 30.8
CPNE1-217ENST00000439669 SF3B4Q15427 424 aaKnown RBP eCLIP21.82■■□□□ 1.088e-8■■■■■ 28.6
CPNE1-217ENST00000439669 TBRG4Q969Z0 631 aaKnown RBP eCLIP23.54■■□□□ 1.362e-6■■■■■ 26.8
CPNE1-217ENST00000439669 HNRNPMP52272 730 aaKnown RBP eCLIP37.85■■■■□ 3.651e-7■■■■□ 25.4
CPNE1-217ENST00000439669 DDX6P26196 483 aaKnown RBP eCLIP25.56■■□□□ 1.689e-13■■■■□ 25.3
CPNE1-217ENST00000439669 AQRO60306 1485 aaKnown RBP eCLIP42.26■■■■■ 4.363e-7■■■■□ 25.1
CPNE1-217ENST00000439669 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.95■□□□□ 0.621e-7■■■■□ 24.8
CPNE1-217ENST00000439669 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP23.75■■□□□ 1.392e-6■■■■□ 24.6
CPNE1-217ENST00000439669 YBX3P16989 372 aaKnown RBP eCLIP31.48■■■□□ 2.632e-6■■■■□ 21.8
CPNE1-217ENST00000439669 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP22.52■■□□□ 1.25e-12■■■■□ 21.5
CPNE1-217ENST00000439669 SAFBQ15424 915 aaKnown RBP eCLIP27.09■■□□□ 1.931e-17■■■■□ 20.2
CPNE1-217ENST00000439669 SF3A3Q12874 501 aaKnown RBP eCLIP21.44■■□□□ 1.026e-8■■■□□ 19.2
CPNE1-217ENST00000439669 FMR1Q06787 632 aaKnown RBP eCLIP30.01■■■□□ 2.397e-7■■■□□ 18.6
CPNE1-217ENST00000439669 FXR2P51116 673 aaKnown RBP eCLIP26.77■■□□□ 1.882e-6■■■□□ 18.4
CPNE1-217ENST00000439669 HNRNPCP07910 306 aaKnown RBP eCLIP17.83■□□□□ 0.448e-7■■■□□ 18.2
CPNE1-217ENST00000439669 RPS3P23396 243 aaKnown RBP eCLIP23.34■■□□□ 1.335e-8■■■□□ 18.1
CPNE1-217ENST00000439669 BCCIPQ9P287 314 aaKnown RBP eCLIP24.96■■□□□ 1.595e-7■■■□□ 17.8
CPNE1-217ENST00000439669 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP22.73■■□□□ 1.234e-6■■■□□ 17.2
CPNE1-217ENST00000439669 KHSRPQ92945 711 aaKnown RBP eCLIP26.13■■□□□ 1.778e-8■■■□□ 15.7
CPNE1-217ENST00000439669 RBM5P52756 815 aaKnown RBP eCLIP29.78■■■□□ 2.363e-6■■■□□ 15.4
CPNE1-217ENST00000439669 DDX3XO00571 662 aaKnown RBP eCLIP24.67■■□□□ 1.541e-13■■■□□ 15.3
CPNE1-217ENST00000439669 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP20.35■□□□□ 0.859e-9■■■□□ 15.2
CPNE1-217ENST00000439669 QKIQ96PU8 341 aaKnown RBP eCLIP24■■□□□ 1.436e-7■■■□□ 15.2
CPNE1-217ENST00000439669 ZNF622Q969S3 477 aaKnown RBP eCLIP31.14■■■□□ 2.582e-6■■■□□ 15.2
CPNE1-217ENST00000439669 RBM15Q96T37 977 aaKnown RBP eCLIP24.03■■□□□ 1.446e-9■■■□□ 15.1
CPNE1-217ENST00000439669 GTF2F1P35269 517 aaKnown RBP eCLIP26.48■■□□□ 1.836e-10■■■□□ 14.7
CPNE1-217ENST00000439669 HLTFQ14527 1009 aaKnown RBP eCLIP23.8■■□□□ 1.45e-8■■□□□ 14.2
CPNE1-217ENST00000439669 EIF3HO15372 352 aaKnown RBP eCLIP23.05■■□□□ 1.288e-7■■□□□ 13.6
CPNE1-217ENST00000439669 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.75■■■■□ 3.477e-10■■□□□ 13.2
CPNE1-217ENST00000439669 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.73■■■■□ 3.791e-38■■□□□ 13.2
CPNE1-217ENST00000439669 ZRANB2O95218 330 aaKnown RBP eCLIP24.09■■□□□ 1.451e-6■■□□□ 12.9
CPNE1-217ENST00000439669 PCBP2Q15366 365 aaKnown RBP eCLIP22.6■■□□□ 1.212e-7■■□□□ 12.7
CPNE1-217ENST00000439669 RBM22Q9NW64 420 aaKnown RBP eCLIP24.17■■□□□ 1.461e-6■■□□□ 12.7
CPNE1-217ENST00000439669 ILF3Q12906 894 aaKnown RBP eCLIP23.89■■□□□ 1.413e-7■■□□□ 12.3
CPNE1-217ENST00000439669 FUSP35637 526 aaKnown RBP eCLIP16.1■□□□□ 0.171e-10■■□□□ 12.2
CPNE1-217ENST00000439669 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.54■■■□□ 2.81e-6■■□□□ 12.2
CPNE1-217ENST00000439669 PPIGQ13427 754 aaKnown RBP eCLIP27.47■■□□□ 1.991e-11■■□□□ 11.7
CPNE1-217ENST00000439669 DDX55Q8NHQ9 600 aaKnown RBP eCLIP29.33■■■□□ 2.298e-6■■□□□ 11.7
CPNE1-217ENST00000439669 LIN28BQ6ZN17 250 aaKnown RBP eCLIP27.05■■□□□ 1.921e-8■■□□□ 11.7
CPNE1-217ENST00000439669 PRPF4O43172 522 aaKnown RBP eCLIP22.87■■□□□ 1.252e-8■□□□□ 11.3
CPNE1-217ENST00000439669 SLTMQ9NWH9 1034 aaKnown RBP eCLIP24.92■■□□□ 1.582e-10■□□□□ 11.3
CPNE1-217ENST00000439669 G3BP1Q13283 466 aaKnown RBP eCLIP29.76■■■□□ 2.357e-8■□□□□ 11.2
CPNE1-217ENST00000439669 SFPQP23246 707 aaKnown RBP eCLIP26.78■■□□□ 1.888e-7■□□□□ 11.1
CPNE1-217ENST00000439669 SDAD1Q9NVU7 687 aaKnown RBP eCLIP22.3■■□□□ 1.169e-7■□□□□ 11
CPNE1-217ENST00000439669 GRSF1Q12849 480 aaKnown RBP eCLIP25.29■■□□□ 1.643e-10■□□□□ 10.9
CPNE1-217ENST00000439669 NIPBLQ6KC79 2804 aaeCLIP20.42■□□□□ 0.861e-8■□□□□ 10.5
CPNE1-217ENST00000439669 XRN2Q9H0D6 950 aaKnown RBP eCLIP28.34■■■□□ 2.136e-9■□□□□ 10.4
CPNE1-217ENST00000439669 U2AF2P26368 475 aaKnown RBP eCLIP26.89■■□□□ 1.93e-26■□□□□ 9.9
CPNE1-217ENST00000439669 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP24.63■■□□□ 1.536e-6■□□□□ 9.8
CPNE1-217ENST00000439669 NCBP2P52298 156 aaKnown RBP eCLIP22.1■■□□□ 1.139e-8■□□□□ 9.8
CPNE1-217ENST00000439669 SRSF7Q16629 238 aaKnown RBP eCLIP18.92■□□□□ 0.621e-7■□□□□ 9.8
CPNE1-217ENST00000439669 TAF15Q92804 592 aaKnown RBP eCLIP19.63■□□□□ 0.731e-6■□□□□ 9.7
CPNE1-217ENST00000439669 FTOQ9C0B1 505 aaKnown RBP eCLIP27.3■■□□□ 1.965e-10■□□□□ 9.7
CPNE1-217ENST00000439669 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.78■■■■□ 3.483e-9■□□□□ 9.4
CPNE1-217ENST00000439669 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.14■■■□□ 2.13e-8■□□□□ 9.3
CPNE1-217ENST00000439669 SAFB2Q14151 953 aaKnown RBP eCLIP34.76■■■■□ 3.163e-13■□□□□ 9.1
CPNE1-217ENST00000439669 U2AF1Q01081 240 aaKnown RBP eCLIP32.16■■■□□ 2.742e-6■□□□□ 8.5
CPNE1-217ENST00000439669 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.35■■□□□ 1.332e-10■□□□□ 8.4
CPNE1-217ENST00000439669 PCBP1Q15365 356 aaKnown RBP eCLIP26.63■■□□□ 1.852e-19■□□□□ 8.2
CPNE1-217ENST00000439669 NOLC1Q14978 699 aaKnown RBP eCLIP26.31■■□□□ 1.83e-8■□□□□ 8.2
Retrieved 70 of 70 RNA–protein pairs in 25.5 ms