RNA–Protein interactions for RNA: ENST00000438862.6

CSTF3-203, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 1 (best) BASIC

Gene CSTF3, Length 1,132 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-203ENST00000438862 CCDC7Q96M83 1385 aa16.31■□□□□ 0.2
CSTF3-203ENST00000438862 ZNF827Q17R98 1081 aa16.31■□□□□ 0.2
CSTF3-203ENST00000438862 SRPK2P78362 688 aaKnown RBP16.3■□□□□ 0.2
CSTF3-203ENST00000438862 ARHGEF25Q86VW2 580 aa16.3■□□□□ 0.2
CSTF3-203ENST00000438862 KCNH5Q8NCM2 988 aa16.3■□□□□ 0.2
CSTF3-203ENST00000438862 ACSBG1Q96GR2 724 aa16.3■□□□□ 0.2
CSTF3-203ENST00000438862 GPBP1L1Q9HC44 474 aaPredicted RBP16.3■□□□□ 0.2
CSTF3-203ENST00000438862 QSER1Q2KHR3 1735 aa16.3■□□□□ 0.2
CSTF3-203ENST00000438862 NLGN2Q8NFZ4 835 aa16.29■□□□□ 0.2
CSTF3-203ENST00000438862 USP6P35125 1406 aa16.28■□□□□ 0.2
CSTF3-203ENST00000438862 CPSF1Q10570 1443 aaKnown RBP16.28■□□□□ 0.2
CSTF3-203ENST00000438862 TNS2Q63HR2 1409 aa16.28■□□□□ 0.2
CSTF3-203ENST00000438862 ATP10DQ9P241 1426 aa16.28■□□□□ 0.2
CSTF3-203ENST00000438862 YBX3P16989 372 aaKnown RBP eCLIP16.28■□□□□ 0.2
CSTF3-203ENST00000438862 SLC27A3Q5K4L6 730 aa16.28■□□□□ 0.2
CSTF3-203ENST00000438862 LRRC4BQ9NT99 713 aa16.28■□□□□ 0.2
CSTF3-203ENST00000438862 RGPD5Q99666 1765 aa16.27■□□□□ 0.2
CSTF3-203ENST00000438862 TRPM1Q7Z4N2 1603 aa16.26■□□□□ 0.19
CSTF3-203ENST00000438862 BTAF1O14981 1849 aa16.26■□□□□ 0.19
CSTF3-203ENST00000438862 PNPLA7Q6ZV29 1317 aa16.25■□□□□ 0.19
CSTF3-203ENST00000438862 KAT6BQ8WYB5 2073 aa16.25■□□□□ 0.19
CSTF3-203ENST00000438862 CABP2Q9NPB3 220 aa16.25■□□□□ 0.19
CSTF3-203ENST00000438862 TFCP2L1Q9NZI6 479 aa16.25■□□□□ 0.19
CSTF3-203ENST00000438862 CABP1Q9NZU7 370 aa16.25■□□□□ 0.19
CSTF3-203ENST00000438862 MNX1P50219 401 aaPredicted RBP16.24■□□□□ 0.19
CSTF3-203ENST00000438862 ABCC6O95255 1503 aa16.24■□□□□ 0.19
CSTF3-203ENST00000438862 PIK3C2AO00443 1686 aa16.22■□□□□ 0.19
CSTF3-203ENST00000438862 IL2RBP14784 551 aa16.21■□□□□ 0.19
CSTF3-203ENST00000438862 GALR2O43603 387 aaPredicted RBP16.2■□□□□ 0.18
CSTF3-203ENST00000438862 DCBLD2Q96PD2 775 aa16.2■□□□□ 0.18
CSTF3-203ENST00000438862 ADCY9O60503 1353 aa16.19■□□□□ 0.18
CSTF3-203ENST00000438862 APLP1P51693 650 aa16.19■□□□□ 0.18
CSTF3-203ENST00000438862 KIAA1210Q9ULL0 1709 aa16.19■□□□□ 0.18
CSTF3-203ENST00000438862 TTC21BQ7Z4L5 1316 aa16.19■□□□□ 0.18
CSTF3-203ENST00000438862 CENPJQ9HC77 1338 aaPredicted RBP16.19■□□□□ 0.18
CSTF3-203ENST00000438862 QRICH2Q9H0J4 1663 aa16.18■□□□□ 0.18
CSTF3-203ENST00000438862 SOX12O15370 315 aa16.18■□□□□ 0.18
CSTF3-203ENST00000438862 ZNF526Q8TF50 670 aaPredicted RBP16.18■□□□□ 0.18
CSTF3-203ENST00000438862 NLRP2Q9NX02 1062 aa16.18■□□□□ 0.18
CSTF3-203ENST00000438862 CD2APQ9Y5K6 639 aa16.18■□□□□ 0.18
CSTF3-203ENST00000438862 TTC21AQ8NDW8 1320 aa16.18■□□□□ 0.18
CSTF3-203ENST00000438862 TUBGCP6Q96RT7 1819 aa16.16■□□□□ 0.18
CSTF3-203ENST00000438862 DNAJC5GQ8N7S2 189 aa16.15■□□□□ 0.18
CSTF3-203ENST00000438862 ERBB3P21860 1342 aa16.15■□□□□ 0.18
CSTF3-203ENST00000438862 NFAT5O94916 1531 aa16.14■□□□□ 0.18
CSTF3-203ENST00000438862 KIF3CO14782 793 aa16.14■□□□□ 0.17
CSTF3-203ENST00000438862 NBPF1Q3BBV0 1214 aa16.14■□□□□ 0.17
CSTF3-203ENST00000438862 HMGB2P26583 209 aaKnown RBP16.13■□□□□ 0.17
CSTF3-203ENST00000438862 COL23A1Q86Y22 540 aaPredicted RBP16.13■□□□□ 0.17
CSTF3-203ENST00000438862 PHF12Q96QT6 1004 aa16.13■□□□□ 0.17
CSTF3-203ENST00000438862 KCNQ4P56696 695 aa16.12■□□□□ 0.17
CSTF3-203ENST00000438862 EVC2Q86UK5 1308 aa16.12■□□□□ 0.17
CSTF3-203ENST00000438862 DDX54Q8TDD1 881 aaKnown RBP16.11■□□□□ 0.17
CSTF3-203ENST00000438862 SYTL4Q96C24 671 aaPredicted RBP16.11■□□□□ 0.17
CSTF3-203ENST00000438862 LY75O60449 1722 aa16.11■□□□□ 0.17
CSTF3-203ENST00000438862 TOMM70O94826 608 aa16.1■□□□□ 0.17
CSTF3-203ENST00000438862 PRIM1P49642 420 aaKnown RBP16.1■□□□□ 0.17
CSTF3-203ENST00000438862 FLAD1Q8NFF5 587 aa16.1■□□□□ 0.17
CSTF3-203ENST00000438862 ANKRD24Q8TF21 1146 aa16.1■□□□□ 0.17
CSTF3-203ENST00000438862 CCNL1Q9UK58 526 aaPredicted RBP16.1■□□□□ 0.17
CSTF3-203ENST00000438862 ANKRD36BQ8N2N9 1353 aa16.1■□□□□ 0.17
CSTF3-203ENST00000438862 RAB3GAP2Q9H2M9 1393 aa16.1■□□□□ 0.17
CSTF3-203ENST00000438862 MSL1Q68DK7 614 aa16.08■□□□□ 0.16
CSTF3-203ENST00000438862 USP31Q70CQ4 1352 aa16.06■□□□□ 0.16
CSTF3-203ENST00000438862 KTN1Q86UP2 1357 aaKnown RBP16.06■□□□□ 0.16
CSTF3-203ENST00000438862 COL13A1Q5TAT6 717 aaPredicted RBP16.06■□□□□ 0.16
CSTF3-203ENST00000438862 PRELPP51888 382 aa16.05■□□□□ 0.16
CSTF3-203ENST00000438862 LTN1O94822 1766 aa16.05■□□□□ 0.16
CSTF3-203ENST00000438862 IGSF1Q8N6C5 1336 aa16.04■□□□□ 0.16
CSTF3-203ENST00000438862 NSD2O96028 1365 aa16.03■□□□□ 0.16
CSTF3-203ENST00000438862 USP47Q96K76 1375 aa16.03■□□□□ 0.16
CSTF3-203ENST00000438862 JMYQ8N9B5 988 aa16.03■□□□□ 0.16
CSTF3-203ENST00000438862 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.02■□□□□ 0.16
CSTF3-203ENST00000438862 TNS4Q8IZW8 715 aa16.02■□□□□ 0.16
CSTF3-203ENST00000438862 KLRG1Q96E93 195 aa16.02■□□□□ 0.16
CSTF3-203ENST00000438862 DOT1LQ8TEK3 1739 aa16.02■□□□□ 0.15
CSTF3-203ENST00000438862 USP54Q70EL1 1684 aa16.02■□□□□ 0.15
CSTF3-203ENST00000438862 ZCRB1Q8TBF4 217 aaKnown RBP16.01■□□□□ 0.15
CSTF3-203ENST00000438862 WDR90Q96KV7 1748 aa16■□□□□ 0.15
CSTF3-203ENST00000438862 IP6K1Q92551 441 aa16■□□□□ 0.15
CSTF3-203ENST00000438862 RBM46Q8TBY0 533 aaKnown RBP15.99■□□□□ 0.15
CSTF3-203ENST00000438862 MON2Q7Z3U7 1717 aa15.99■□□□□ 0.15
CSTF3-203ENST00000438862 C5P01031 1676 aa15.99■□□□□ 0.15
CSTF3-203ENST00000438862 FAM208AQ9UK61 1670 aaKnown RBP15.99■□□□□ 0.15
CSTF3-203ENST00000438862 NME9Q86XW9 330 aa15.98■□□□□ 0.15
CSTF3-203ENST00000438862 WWC3Q9ULE0 1092 aa15.98■□□□□ 0.15
CSTF3-203ENST00000438862 CICQ96RK0 1608 aaPredicted RBP15.97■□□□□ 0.15
CSTF3-203ENST00000438862 POTEB2H3BUK9 544 aa15.96■□□□□ 0.15
CSTF3-203ENST00000438862 FSTL1Q12841 308 aa15.96■□□□□ 0.15
CSTF3-203ENST00000438862 C16orf71Q8IYS4 520 aaPredicted RBP15.96■□□□□ 0.15
CSTF3-203ENST00000438862 LTV1Q96GA3 475 aaPredicted RBP15.95■□□□□ 0.14
CSTF3-203ENST00000438862 TAF1LQ8IZX4 1826 aa15.95■□□□□ 0.14
CSTF3-203ENST00000438862 AK7Q96M32 723 aa15.94■□□□□ 0.14
CSTF3-203ENST00000438862 NMRK2Q9NPI5 230 aa15.94■□□□□ 0.14
CSTF3-203ENST00000438862 NSD3Q9BZ95 1437 aa15.94■□□□□ 0.14
CSTF3-203ENST00000438862 CGNL1Q0VF96 1302 aa15.94■□□□□ 0.14
CSTF3-203ENST00000438862 SBNO2Q9Y2G9 1366 aa15.93■□□□□ 0.14
CSTF3-203ENST00000438862 TGFB2P61812 414 aa15.92■□□□□ 0.14
CSTF3-203ENST00000438862 HDGFL2Q7Z4V5 671 aaPredicted RBP15.92■□□□□ 0.14
CSTF3-203ENST00000438862 PALLDQ8WX93 1383 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms