RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 USHBP1Q8N6Y0 703 aa12.01□□□□□ -0.49
CUX1-206ENST00000437600 DDRGK1Q96HY6 314 aa12.01□□□□□ -0.49
CUX1-206ENST00000437600 LNPKQ9C0E8 428 aa12.01□□□□□ -0.49
CUX1-206ENST00000437600 NFKBIBQ15653 356 aa12.01□□□□□ -0.49
CUX1-206ENST00000437600 IL27Q8NEV9 243 aa12.01□□□□□ -0.49
CUX1-206ENST00000437600 MBIPQ9NS73 344 aa12.01□□□□□ -0.49
CUX1-206ENST00000437600 FRAT2O75474 233 aaPredicted RBP12□□□□□ -0.49
CUX1-206ENST00000437600 VAMP4O75379 141 aa12□□□□□ -0.49
CUX1-206ENST00000437600 ZC3H6P61129 1189 aaKnown RBP12□□□□□ -0.49
CUX1-206ENST00000437600 TTC21AQ8NDW8 1320 aa11.99□□□□□ -0.49
CUX1-206ENST00000437600 MFAP1P55081 439 aaKnown RBP11.99□□□□□ -0.49
CUX1-206ENST00000437600 PEAK1Q9H792 1746 aa11.99□□□□□ -0.49
CUX1-206ENST00000437600 EYA1Q99502 592 aa11.99□□□□□ -0.49
CUX1-206ENST00000437600 LTBP4Q8N2S1 1624 aa11.98□□□□□ -0.49
CUX1-206ENST00000437600 DCCP43146 1447 aa11.98□□□□□ -0.49
CUX1-206ENST00000437600 APBB1O00213 710 aa11.97□□□□□ -0.49
CUX1-206ENST00000437600 ZBTB40Q9NUA8 1239 aa11.97□□□□□ -0.49
CUX1-206ENST00000437600 DDX19BQ9UMR2 479 aa11.97□□□□□ -0.49
CUX1-206ENST00000437600 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.97□□□□□ -0.49
CUX1-206ENST00000437600 USP31Q70CQ4 1352 aa11.97□□□□□ -0.49
CUX1-206ENST00000437600 TWISTNBQ3B726 338 aaPredicted RBP11.97□□□□□ -0.49
CUX1-206ENST00000437600 TRPM3Q9HCF6 1732 aaPredicted RBP11.97□□□□□ -0.49
CUX1-206ENST00000437600 NPHP3Q7Z494 1330 aa11.96□□□□□ -0.49
CUX1-206ENST00000437600 LTN1O94822 1766 aa11.96□□□□□ -0.49
CUX1-206ENST00000437600 ANKRD45Q5TZF3 282 aa11.96□□□□□ -0.49
CUX1-206ENST00000437600 NCOA3Q9Y6Q9 1424 aa11.96□□□□□ -0.5
CUX1-206ENST00000437600 HOXC9P31274 260 aa11.96□□□□□ -0.5
CUX1-206ENST00000437600 MTHFSDQ2M296 383 aaKnown RBP11.96□□□□□ -0.5
CUX1-206ENST00000437600 FLT4P35916 1363 aa11.96□□□□□ -0.5
CUX1-206ENST00000437600 IPO8O15397 1037 aaKnown RBP11.95□□□□□ -0.5
CUX1-206ENST00000437600 GCP02774 474 aa11.95□□□□□ -0.5
CUX1-206ENST00000437600 CHRNA2Q15822 529 aa11.95□□□□□ -0.5
CUX1-206ENST00000437600 NECTIN2Q92692 538 aa11.95□□□□□ -0.5
CUX1-206ENST00000437600 KIF1AQ12756 1690 aa11.95□□□□□ -0.5
CUX1-206ENST00000437600 MRPL50Q8N5N7 158 aaKnown RBP11.94□□□□□ -0.5
CUX1-206ENST00000437600 IL16Q14005 1332 aa11.94□□□□□ -0.5
CUX1-206ENST00000437600 ZBTB7BO15156 539 aaPredicted RBP11.94□□□□□ -0.5
CUX1-206ENST00000437600 GNAI1P63096 354 aa11.94□□□□□ -0.5
CUX1-206ENST00000437600 LRRC59Q96AG4 307 aaKnown RBP11.94□□□□□ -0.5
CUX1-206ENST00000437600 SBNO1A3KN83 1393 aa11.94□□□□□ -0.5
CUX1-206ENST00000437600 PXDNQ92626 1479 aa11.94□□□□□ -0.5
CUX1-206ENST00000437600 ROBO1Q9Y6N7 1651 aa11.94□□□□□ -0.5
CUX1-206ENST00000437600 RGPD5Q99666 1765 aa11.93□□□□□ -0.5
CUX1-206ENST00000437600 AXIN2Q9Y2T1 843 aa11.93□□□□□ -0.5
CUX1-206ENST00000437600 CFAP44Q96MT7 982 aa11.93□□□□□ -0.5
CUX1-206ENST00000437600 SIRT2Q8IXJ6 389 aa11.92□□□□□ -0.5
CUX1-206ENST00000437600 ARXQ96QS3 562 aa11.92□□□□□ -0.5
CUX1-206ENST00000437600 IFT57Q9NWB7 429 aa11.92□□□□□ -0.5
CUX1-206ENST00000437600 RGPD2P0DJD1 1756 aa11.92□□□□□ -0.5
CUX1-206ENST00000437600 ALS2Q96Q42 1657 aa11.92□□□□□ -0.5
CUX1-206ENST00000437600 DLG5Q8TDM6 1919 aa11.92□□□□□ -0.5
CUX1-206ENST00000437600 UBAP1LF5GYI3 381 aa11.92□□□□□ -0.5
CUX1-206ENST00000437600 CT47B1P0C2W7 299 aaPredicted RBP11.92□□□□□ -0.5
CUX1-206ENST00000437600 NCBP3Q53F19 620 aaKnown RBP11.92□□□□□ -0.5
CUX1-206ENST00000437600 MED1Q15648 1581 aaPredicted RBP11.92□□□□□ -0.5
CUX1-206ENST00000437600 SPATA31A3Q5VYP0 1347 aa11.92□□□□□ -0.5
CUX1-206ENST00000437600 UPF2Q9HAU5 1272 aaKnown RBP11.92□□□□□ -0.5
CUX1-206ENST00000437600 KIF16BQ96L93 1317 aa11.91□□□□□ -0.5
CUX1-206ENST00000437600 ZNF853P0CG23 659 aa11.91□□□□□ -0.5
CUX1-206ENST00000437600 HAP1P54257 671 aaPredicted RBP11.91□□□□□ -0.5
CUX1-206ENST00000437600 LMOD3Q0VAK6 560 aa11.91□□□□□ -0.5
CUX1-206ENST00000437600 C16orf71Q8IYS4 520 aaPredicted RBP11.91□□□□□ -0.5
CUX1-206ENST00000437600 TNS3Q68CZ2 1445 aa11.91□□□□□ -0.5
CUX1-206ENST00000437600 RTF1Q92541 710 aaKnown RBP11.91□□□□□ -0.5
CUX1-206ENST00000437600 TBC1D2Q9BYX2 928 aa11.91□□□□□ -0.5
CUX1-206ENST00000437600 NFAT5O94916 1531 aa11.9□□□□□ -0.5
CUX1-206ENST00000437600 HDAC1Q13547 482 aaPredicted RBP11.9□□□□□ -0.5
CUX1-206ENST00000437600 NBPF6Q5VWK0 638 aa11.9□□□□□ -0.5
CUX1-206ENST00000437600 NBPF4Q96M43 638 aa11.9□□□□□ -0.5
CUX1-206ENST00000437600 F6X3S4 739 aa11.9□□□□□ -0.5
CUX1-206ENST00000437600 CALD1Q05682 793 aaKnown RBP11.9□□□□□ -0.5
CUX1-206ENST00000437600 SLC4A10Q6U841 1118 aa11.9□□□□□ -0.5
CUX1-206ENST00000437600 SMC5Q8IY18 1101 aa11.9□□□□□ -0.5
CUX1-206ENST00000437600 IGSF1Q8N6C5 1336 aa11.9□□□□□ -0.51
CUX1-206ENST00000437600 ALDH1L2Q3SY69 923 aa11.89□□□□□ -0.51
CUX1-206ENST00000437600 TBC1D32Q96NH3 1257 aa11.89□□□□□ -0.51
CUX1-206ENST00000437600 EP400Q96L91 3159 aa11.89□□□□□ -0.51
CUX1-206ENST00000437600 SOS2Q07890 1332 aaPredicted RBP11.89□□□□□ -0.51
CUX1-206ENST00000437600 CHD1LQ86WJ1 897 aa11.89□□□□□ -0.51
CUX1-206ENST00000437600 C22orf23Q9BZE7 217 aa11.89□□□□□ -0.51
CUX1-206ENST00000437600 FOXD4L1Q9NU39 408 aa11.89□□□□□ -0.51
CUX1-206ENST00000437600 SLC4A2P04920 1241 aa11.88□□□□□ -0.51
CUX1-206ENST00000437600 ARHGEF25Q86VW2 580 aa11.88□□□□□ -0.51
CUX1-206ENST00000437600 TSPYL4Q9UJ04 414 aa11.88□□□□□ -0.51
CUX1-206ENST00000437600 KIAA0232Q92628 1395 aa11.88□□□□□ -0.51
CUX1-206ENST00000437600 KCNH5Q8NCM2 988 aa11.88□□□□□ -0.51
CUX1-206ENST00000437600 NUCB1Q02818 461 aa11.87□□□□□ -0.51
CUX1-206ENST00000437600 G2E3Q7L622 706 aa11.87□□□□□ -0.51
CUX1-206ENST00000437600 SMARCA5O60264 1052 aaPredicted RBP11.87□□□□□ -0.51
CUX1-206ENST00000437600 ZNF428Q96B54 188 aa11.87□□□□□ -0.51
CUX1-206ENST00000437600 ARHGEF10O15013 1369 aa11.87□□□□□ -0.51
CUX1-206ENST00000437600 AAMPQ13685 434 aa11.86□□□□□ -0.51
CUX1-206ENST00000437600 OTUD7AQ8TE49 926 aaPredicted RBP11.86□□□□□ -0.51
CUX1-206ENST00000437600 NHSL1Q5SYE7 1610 aa11.86□□□□□ -0.51
CUX1-206ENST00000437600 PHRF1Q9P1Y6 1649 aaKnown RBP11.86□□□□□ -0.51
CUX1-206ENST00000437600 CHL1O00533 1208 aa11.86□□□□□ -0.51
CUX1-206ENST00000437600 IP6K1Q92551 441 aa11.86□□□□□ -0.51
CUX1-206ENST00000437600 RBM42Q9BTD8 480 aaKnown RBP11.86□□□□□ -0.51
CUX1-206ENST00000437600 NUTM2BA6NNL0 878 aaPredicted RBP11.86□□□□□ -0.51
CUX1-206ENST00000437600 NUTM2EB1AL46 878 aaPredicted RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms