RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 GOLGA6L10A6NI86 522 aa14.25□□□□□ -0.13
CCDC88A-207ENST00000436346 STARD3NLO95772 234 aa14.25□□□□□ -0.13
CCDC88A-207ENST00000436346 LUC7LQ9NQ29 371 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-207ENST00000436346 TMOD2Q9NZR1 351 aa14.25□□□□□ -0.13
CCDC88A-207ENST00000436346 PAXIP1Q6ZW49 1069 aaPredicted RBP14.24□□□□□ -0.13
CCDC88A-207ENST00000436346 RABEP1Q15276 862 aa14.24□□□□□ -0.13
CCDC88A-207ENST00000436346 ENOX2Q16206 610 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-207ENST00000436346 SSBP05455 408 aaKnown RBP eCLIP14.24□□□□□ -0.13
CCDC88A-207ENST00000436346 ADGRL1O94910 1474 aa14.24□□□□□ -0.13
CCDC88A-207ENST00000436346 SPC24Q8NBT2 197 aa14.24□□□□□ -0.13
CCDC88A-207ENST00000436346 PNISRQ8TF01 805 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-207ENST00000436346 SERPINC1P01008 464 aa14.23□□□□□ -0.13
CCDC88A-207ENST00000436346 TROQ12816 1431 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-207ENST00000436346 NCAPD3P42695 1498 aa14.23□□□□□ -0.13
CCDC88A-207ENST00000436346 DESP17661 470 aa14.23□□□□□ -0.13
CCDC88A-207ENST00000436346 MYCNP04198 464 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-207ENST00000436346 USP5P45974 858 aa14.23□□□□□ -0.13
CCDC88A-207ENST00000436346 SLC26A8Q96RN1 970 aa14.23□□□□□ -0.13
CCDC88A-207ENST00000436346 MCM2P49736 904 aa14.23□□□□□ -0.13
CCDC88A-207ENST00000436346 TMOD3Q9NYL9 352 aa14.23□□□□□ -0.13
CCDC88A-207ENST00000436346 NEFHP12036 1026 aa14.22□□□□□ -0.13
CCDC88A-207ENST00000436346 MAGI1Q96QZ7 1491 aaPredicted RBP14.22□□□□□ -0.13
CCDC88A-207ENST00000436346 TNMDQ9H2S6 317 aa14.22□□□□□ -0.13
CCDC88A-207ENST00000436346 SRGAP3O43295 1099 aa14.22□□□□□ -0.13
CCDC88A-207ENST00000436346 PPFIBP1Q86W92 1011 aa14.22□□□□□ -0.13
CCDC88A-207ENST00000436346 EXOSC9Q06265 439 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-207ENST00000436346 FAM43AQ8N2R8 423 aa14.22□□□□□ -0.13
CCDC88A-207ENST00000436346 BIVM-ERCC5R4GMW8 1640 aa14.22□□□□□ -0.13
CCDC88A-207ENST00000436346 CWC27Q6UX04 472 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-207ENST00000436346 EIF2AK4Q9P2K8 1649 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-207ENST00000436346 ZNF692Q9BU19 519 aaPredicted RBP14.22□□□□□ -0.13
CCDC88A-207ENST00000436346 GNAT3A8MTJ3 354 aa14.21□□□□□ -0.13
CCDC88A-207ENST00000436346 BCAR3O75815 825 aa14.21□□□□□ -0.13
CCDC88A-207ENST00000436346 SRCIN1Q9C0H9 1055 aa14.21□□□□□ -0.13
CCDC88A-207ENST00000436346 NEBLO76041 1014 aa14.21□□□□□ -0.13
CCDC88A-207ENST00000436346 RPGRQ92834 1020 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-207ENST00000436346 AIDAQ96BJ3 306 aa14.21□□□□□ -0.13
CCDC88A-207ENST00000436346 ATAD2Q6PL18 1390 aa14.21□□□□□ -0.13
CCDC88A-207ENST00000436346 SPDYE4A6NLX3 237 aa14.21□□□□□ -0.13
CCDC88A-207ENST00000436346 CENPHQ9H3R5 247 aa14.21□□□□□ -0.14
CCDC88A-207ENST00000436346 SLC52A1Q9NWF4 448 aa14.21□□□□□ -0.14
CCDC88A-207ENST00000436346 AXDND1Q5T1B0 1012 aaPredicted RBP14.21□□□□□ -0.14
CCDC88A-207ENST00000436346 SCLT1Q96NL6 688 aa14.21□□□□□ -0.14
CCDC88A-207ENST00000436346 TXLNBQ8N3L3 684 aa14.2□□□□□ -0.14
CCDC88A-207ENST00000436346 SLC12A5Q9H2X9 1139 aa14.2□□□□□ -0.14
CCDC88A-207ENST00000436346 CFAP43Q8NDM7 1665 aa14.2□□□□□ -0.14
CCDC88A-207ENST00000436346 CCDC191Q8NCU4 936 aa14.2□□□□□ -0.14
CCDC88A-207ENST00000436346 NOL7Q9UMY1 257 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-207ENST00000436346 IDH1O75874 414 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-207ENST00000436346 H0YHG0 523 aa14.2□□□□□ -0.14
CCDC88A-207ENST00000436346 VSIG10Q8N0Z9 540 aa14.2□□□□□ -0.14
CCDC88A-207ENST00000436346 GBP2P32456 591 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-207ENST00000436346 ERCC4Q92889 916 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-207ENST00000436346 GCC1Q96CN9 775 aa14.2□□□□□ -0.14
CCDC88A-207ENST00000436346 ANKRD62A6NC57 917 aa14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 CASTP20810 708 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 ADAMTS2O95450 1211 aa14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 TNIP1Q15025 636 aa14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 DACH1Q9UI36 760 aa14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 CRACR2BQ8N4Y2 399 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 MBD3O95983 291 aa14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 ABCF2Q9UG63 623 aa14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 SSR1P43307 286 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 METTL24Q5JXM2 366 aa14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 CCDC192P0DO97 292 aa14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 KDM5AP29375 1690 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 ZC3H6P61129 1189 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 ZNF287Q9HBT7 754 aa14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 MIS18AQ9NYP9 233 aa14.19□□□□□ -0.14
CCDC88A-207ENST00000436346 PRPF40AO75400 957 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-207ENST00000436346 NBPF1Q3BBV0 1214 aa14.18□□□□□ -0.14
CCDC88A-207ENST00000436346 ANKRD18AQ8IVF6 992 aa14.18□□□□□ -0.14
CCDC88A-207ENST00000436346 CCDC181Q5TID7 509 aa14.18□□□□□ -0.14
CCDC88A-207ENST00000436346 DZIP1Q86YF9 867 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-207ENST00000436346 AEBP1Q8IUX7 1158 aa14.18□□□□□ -0.14
CCDC88A-207ENST00000436346 CEP57L1Q8IYX8 460 aa14.18□□□□□ -0.14
CCDC88A-207ENST00000436346 HMGB2P26583 209 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-207ENST00000436346 ANKRD30BQ9BXX2 1392 aa14.17□□□□□ -0.14
CCDC88A-207ENST00000436346 PTCD1O75127 700 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-207ENST00000436346 PPM1FP49593 454 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-207ENST00000436346 PPP4R3AQ6IN85 833 aa14.17□□□□□ -0.14
CCDC88A-207ENST00000436346 CWC15Q9P013 229 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-207ENST00000436346 CAVIN4Q5BKX8 364 aa14.17□□□□□ -0.14
CCDC88A-207ENST00000436346 IMMTQ16891 758 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-207ENST00000436346 CCDC97Q96F63 343 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-207ENST00000436346 BMP2KQ9NSY1 1161 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-207ENST00000436346 CDCA7LQ96GN5 454 aa14.17□□□□□ -0.14
CCDC88A-207ENST00000436346 WDHD1O75717 1129 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-207ENST00000436346 MPRIPQ6WCQ1 1025 aa14.16□□□□□ -0.14
CCDC88A-207ENST00000436346 CTNNA3Q9UI47 895 aa14.16□□□□□ -0.14
CCDC88A-207ENST00000436346 POLR3DP05423 398 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-207ENST00000436346 MYO10Q9HD67 2058 aa14.16□□□□□ -0.14
CCDC88A-207ENST00000436346 PPP1R12BO60237 982 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-207ENST00000436346 LARP1BQ659C4 914 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-207ENST00000436346 CEP126Q9P2H0 1117 aa14.15□□□□□ -0.14
CCDC88A-207ENST00000436346 IQCEQ6IPM2 695 aa14.15□□□□□ -0.14
CCDC88A-207ENST00000436346 WASF1Q92558 559 aa14.15□□□□□ -0.14
CCDC88A-207ENST00000436346 DNAI2Q9GZS0 605 aa14.15□□□□□ -0.14
CCDC88A-207ENST00000436346 CD109Q6YHK3 1445 aa14.15□□□□□ -0.14
CCDC88A-207ENST00000436346 CALRP27797 417 aaKnown RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms