RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 USP54Q70EL1 1684 aa23.35■■□□□ 1.33
CLK1-205ENST00000434813 C22orf23Q9BZE7 217 aa23.35■■□□□ 1.33
CLK1-205ENST00000434813 KDRP35968 1356 aa23.35■■□□□ 1.33
CLK1-205ENST00000434813 TBC1D2Q9BYX2 928 aa23.35■■□□□ 1.33
CLK1-205ENST00000434813 C1orf115Q9H7X2 142 aa23.35■■□□□ 1.33
CLK1-205ENST00000434813 RGS12O14924 1447 aa23.35■■□□□ 1.33
CLK1-205ENST00000434813 CRB1P82279 1406 aa23.35■■□□□ 1.33
CLK1-205ENST00000434813 MFAP1P55081 439 aaKnown RBP23.34■■□□□ 1.33
CLK1-205ENST00000434813 FRAT2O75474 233 aaPredicted RBP23.33■■□□□ 1.32
CLK1-205ENST00000434813 BMP2KLQ5H9B9 411 aa23.33■■□□□ 1.32
CLK1-205ENST00000434813 SIRT2Q8IXJ6 389 aa23.33■■□□□ 1.32
CLK1-205ENST00000434813 MCM10Q7L590 875 aa23.32■■□□□ 1.32
CLK1-205ENST00000434813 C14orf37Q86TY3 774 aa23.32■■□□□ 1.32
CLK1-205ENST00000434813 RBM33Q96EV2 1170 aaKnown RBP23.32■■□□□ 1.32
CLK1-205ENST00000434813 ANTXR1Q9H6X2 564 aa23.32■■□□□ 1.32
CLK1-205ENST00000434813 ADGRL3Q9HAR2 1447 aa23.31■■□□□ 1.32
CLK1-205ENST00000434813 MARF1Q9Y4F3 1742 aaKnown RBP23.31■■□□□ 1.32
CLK1-205ENST00000434813 INTS3Q68E01 1043 aaKnown RBP23.31■■□□□ 1.32
CLK1-205ENST00000434813 GSE1Q14687 1217 aa23.3■■□□□ 1.32
CLK1-205ENST00000434813 SOX12O15370 315 aa23.3■■□□□ 1.32
CLK1-205ENST00000434813 ANKRD45Q5TZF3 282 aa23.3■■□□□ 1.32
CLK1-205ENST00000434813 IGSF1Q8N6C5 1336 aa23.3■■□□□ 1.32
CLK1-205ENST00000434813 LRRC37A3O60309 1634 aa23.29■■□□□ 1.32
CLK1-205ENST00000434813 PTPRCP08575 1304 aa23.28■■□□□ 1.32
CLK1-205ENST00000434813 KRT24Q2M2I5 525 aa23.28■■□□□ 1.32
CLK1-205ENST00000434813 SLKQ9H2G2 1235 aaPredicted RBP23.28■■□□□ 1.32
CLK1-205ENST00000434813 ATP10DQ9P241 1426 aa23.27■■□□□ 1.32
CLK1-205ENST00000434813 RBM25P49756 843 aaKnown RBP23.26■■□□□ 1.31
CLK1-205ENST00000434813 NWD1Q149M9 1564 aa23.26■■□□□ 1.31
CLK1-205ENST00000434813 MTHFSDQ2M296 383 aaKnown RBP23.25■■□□□ 1.31
CLK1-205ENST00000434813 PHF8Q9UPP1 1060 aa23.25■■□□□ 1.31
CLK1-205ENST00000434813 AMPHP49418 695 aa23.24■■□□□ 1.31
CLK1-205ENST00000434813 PROSER2Q86WR7 435 aaPredicted RBP23.23■■□□□ 1.31
CLK1-205ENST00000434813 EYA1Q99502 592 aa23.23■■□□□ 1.31
CLK1-205ENST00000434813 STRCQ7RTU9 1775 aa23.23■■□□□ 1.31
CLK1-205ENST00000434813 GAS2L2Q8NHY3 880 aa23.23■■□□□ 1.31
CLK1-205ENST00000434813 RTF1Q92541 710 aaKnown RBP23.23■■□□□ 1.31
CLK1-205ENST00000434813 MSH6P52701 1360 aa23.23■■□□□ 1.31
CLK1-205ENST00000434813 FOXO3O43524 673 aa23.21■■□□□ 1.31
CLK1-205ENST00000434813 ESCO1Q5FWF5 840 aa23.21■■□□□ 1.31
CLK1-205ENST00000434813 DCTPP1Q9H773 170 aa23.21■■□□□ 1.31
CLK1-205ENST00000434813 NLRP6P59044 892 aa23.2■■□□□ 1.3
CLK1-205ENST00000434813 ANKRD44Q8N8A2 993 aa23.2■■□□□ 1.3
CLK1-205ENST00000434813 RTL1A6NKG5 1358 aa23.19■■□□□ 1.3
CLK1-205ENST00000434813 HTATSF1O43719 755 aaKnown RBP23.19■■□□□ 1.3
CLK1-205ENST00000434813 RPAP2Q8IXW5 612 aaPredicted RBP23.19■■□□□ 1.3
CLK1-205ENST00000434813 TSPYL4Q9UJ04 414 aa23.19■■□□□ 1.3
CLK1-205ENST00000434813 ABTB2Q8N961 1025 aa23.18■■□□□ 1.3
CLK1-205ENST00000434813 FAM208AQ9UK61 1670 aaKnown RBP23.18■■□□□ 1.3
CLK1-205ENST00000434813 HOXC9P31274 260 aa23.18■■□□□ 1.3
CLK1-205ENST00000434813 NCOA3Q9Y6Q9 1424 aa23.18■■□□□ 1.3
CLK1-205ENST00000434813 CEP85Q6P2H3 762 aa23.17■■□□□ 1.3
CLK1-205ENST00000434813 HSCBQ8IWL3 235 aa23.17■■□□□ 1.3
CLK1-205ENST00000434813 PSME1Q06323 249 aa23.16■■□□□ 1.3
CLK1-205ENST00000434813 SLC4A2P04920 1241 aa23.16■■□□□ 1.3
CLK1-205ENST00000434813 TBC1D9Q6ZT07 1266 aa23.16■■□□□ 1.3
CLK1-205ENST00000434813 SNX21Q969T3 373 aa23.16■■□□□ 1.3
CLK1-205ENST00000434813 MIS18AQ9NYP9 233 aa23.15■■□□□ 1.3
CLK1-205ENST00000434813 C19orf44Q9H6X5 657 aa23.15■■□□□ 1.3
CLK1-205ENST00000434813 CDC45O75419 566 aa23.14■■□□□ 1.29
CLK1-205ENST00000434813 NUTM2GQ5VZR2 741 aa23.14■■□□□ 1.29
CLK1-205ENST00000434813 PLEKHM2Q8IWE5 1019 aa23.14■■□□□ 1.29
CLK1-205ENST00000434813 GSPT1P15170 499 aaKnown RBP23.13■■□□□ 1.29
CLK1-205ENST00000434813 MEIS3Q99687 375 aa23.13■■□□□ 1.29
CLK1-205ENST00000434813 CHMP5Q9NZZ3 219 aa23.13■■□□□ 1.29
CLK1-205ENST00000434813 LTN1O94822 1766 aa23.12■■□□□ 1.29
CLK1-205ENST00000434813 MAP3K5Q99683 1374 aa23.12■■□□□ 1.29
CLK1-205ENST00000434813 GNAT3A8MTJ3 354 aa23.11■■□□□ 1.29
CLK1-205ENST00000434813 EIF5BO60841 1220 aaKnown RBP23.11■■□□□ 1.29
CLK1-205ENST00000434813 N4BP2Q86UW6 1770 aaPredicted RBP23.11■■□□□ 1.29
CLK1-205ENST00000434813 SOS1Q07889 1333 aaPredicted RBP23.11■■□□□ 1.29
CLK1-205ENST00000434813 CCT4P50991 539 aaKnown RBP23.11■■□□□ 1.29
CLK1-205ENST00000434813 TTC22Q5TAA0 569 aa23.1■■□□□ 1.29
CLK1-205ENST00000434813 ORAI2Q96SN7 254 aa23.1■■□□□ 1.29
CLK1-205ENST00000434813 NFAT5O94916 1531 aa23.1■■□□□ 1.29
CLK1-205ENST00000434813 KIF2CQ99661 725 aa23.09■■□□□ 1.29
CLK1-205ENST00000434813 G2E3Q7L622 706 aa23.09■■□□□ 1.29
CLK1-205ENST00000434813 SPRYD3Q8NCJ5 442 aa23.09■■□□□ 1.29
CLK1-205ENST00000434813 TMEM94Q12767 1356 aa23.09■■□□□ 1.29
CLK1-205ENST00000434813 ATF3P18847 181 aa23.08■■□□□ 1.29
CLK1-205ENST00000434813 STK31Q9BXU1 1019 aa23.08■■□□□ 1.29
CLK1-205ENST00000434813 BABAM1Q9NWV8 329 aa23.08■■□□□ 1.29
CLK1-205ENST00000434813 CACNA1FO60840 1977 aa23.07■■□□□ 1.28
CLK1-205ENST00000434813 PHRF1Q9P1Y6 1649 aaKnown RBP23.07■■□□□ 1.28
CLK1-205ENST00000434813 DDIT3P35638 169 aa23.07■■□□□ 1.28
CLK1-205ENST00000434813 HMMRO75330 724 aa23.06■■□□□ 1.28
CLK1-205ENST00000434813 C1orf167Q5SNV9 1468 aa23.05■■□□□ 1.28
CLK1-205ENST00000434813 CCDC30Q5VVM6 783 aa23.05■■□□□ 1.28
CLK1-205ENST00000434813 PXDNLA1KZ92 1463 aa23.05■■□□□ 1.28
CLK1-205ENST00000434813 F6X3S4 739 aa23.04■■□□□ 1.28
CLK1-205ENST00000434813 MED1Q15648 1581 aaPredicted RBP23.04■■□□□ 1.28
CLK1-205ENST00000434813 ZNF335Q9H4Z2 1342 aaPredicted RBP23.04■■□□□ 1.28
CLK1-205ENST00000434813 SLC4A10Q6U841 1118 aa23.04■■□□□ 1.28
CLK1-205ENST00000434813 IL17REQ8NFR9 667 aa23.04■■□□□ 1.28
CLK1-205ENST00000434813 DCCP43146 1447 aa23.04■■□□□ 1.28
CLK1-205ENST00000434813 MCM4P33991 863 aa23.03■■□□□ 1.28
CLK1-205ENST00000434813 FLIIQ13045 1269 aa23.03■■□□□ 1.28
CLK1-205ENST00000434813 C16orf71Q8IYS4 520 aaPredicted RBP23.03■■□□□ 1.28
CLK1-205ENST00000434813 KCNH5Q8NCM2 988 aa23.02■■□□□ 1.28
CLK1-205ENST00000434813 OTUD7AQ8TE49 926 aaPredicted RBP23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms