RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 USP54Q70EL1 1684 aa19.3■□□□□ 0.68
USP4-203ENST00000415188 DDB1Q16531 1140 aa19.29■□□□□ 0.68
USP4-203ENST00000415188 NCBP3Q53F19 620 aaKnown RBP19.29■□□□□ 0.68
USP4-203ENST00000415188 CARD10Q9BWT7 1032 aa19.29■□□□□ 0.68
USP4-203ENST00000415188 E9PSI1 815 aa19.28■□□□□ 0.68
USP4-203ENST00000415188 R3HDM1Q15032 1099 aaKnown RBP19.28■□□□□ 0.68
USP4-203ENST00000415188 WNK3Q9BYP7 1800 aa19.28■□□□□ 0.68
USP4-203ENST00000415188 TCERG1O14776 1098 aaKnown RBP19.28■□□□□ 0.68
USP4-203ENST00000415188 PEAK1Q9H792 1746 aa19.28■□□□□ 0.68
USP4-203ENST00000415188 OVOS2A0A0G2JMS6 1433 aa19.27■□□□□ 0.68
USP4-203ENST00000415188 OVOS2A0A0J9YW53 1432 aa19.27■□□□□ 0.68
USP4-203ENST00000415188 OVOS2Q6IE36 1432 aa19.27■□□□□ 0.68
USP4-203ENST00000415188 CFAP53Q96M91 514 aa19.27■□□□□ 0.67
USP4-203ENST00000415188 ABCC6O95255 1503 aa19.27■□□□□ 0.67
USP4-203ENST00000415188 APAF1O14727 1248 aa19.26■□□□□ 0.67
USP4-203ENST00000415188 MS4A1P11836 297 aa19.25■□□□□ 0.67
USP4-203ENST00000415188 MARCH10Q8NA82 808 aaPredicted RBP19.25■□□□□ 0.67
USP4-203ENST00000415188 PTF1AQ7RTS3 328 aa19.24■□□□□ 0.67
USP4-203ENST00000415188 CDCA7Q9BWT1 371 aaPredicted RBP19.24■□□□□ 0.67
USP4-203ENST00000415188 ERBB3P21860 1342 aa19.24■□□□□ 0.67
USP4-203ENST00000415188 LTN1O94822 1766 aa19.24■□□□□ 0.67
USP4-203ENST00000415188 CCDC146Q8IYE0 955 aa19.23■□□□□ 0.67
USP4-203ENST00000415188 CRBNQ96SW2 442 aa19.23■□□□□ 0.67
USP4-203ENST00000415188 NLRP2Q9NX02 1062 aa19.22■□□□□ 0.67
USP4-203ENST00000415188 LRP5O75197 1615 aa19.22■□□□□ 0.67
USP4-203ENST00000415188 RREB1Q92766 1687 aa19.22■□□□□ 0.67
USP4-203ENST00000415188 MSH5O43196 834 aa19.22■□□□□ 0.67
USP4-203ENST00000415188 ANKRD24Q8TF21 1146 aa19.22■□□□□ 0.67
USP4-203ENST00000415188 RUNDC1Q96C34 613 aa19.22■□□□□ 0.67
USP4-203ENST00000415188 NUP188Q5SRE5 1749 aa19.21■□□□□ 0.67
USP4-203ENST00000415188 EXOC5O00471 708 aa19.2■□□□□ 0.66
USP4-203ENST00000415188 PLIN1O60240 522 aa19.2■□□□□ 0.66
USP4-203ENST00000415188 FBLN1P23142 703 aa19.2■□□□□ 0.66
USP4-203ENST00000415188 SBF2Q86WG5 1849 aa19.2■□□□□ 0.66
USP4-203ENST00000415188 COG3Q96JB2 828 aa19.19■□□□□ 0.66
USP4-203ENST00000415188 KIF20BQ96Q89 1820 aa19.19■□□□□ 0.66
USP4-203ENST00000415188 CCDC27Q2M243 656 aa19.18■□□□□ 0.66
USP4-203ENST00000415188 BCL11BQ9C0K0 894 aaPredicted RBP19.18■□□□□ 0.66
USP4-203ENST00000415188 TNS2Q63HR2 1409 aa19.18■□□□□ 0.66
USP4-203ENST00000415188 BCL9O00512 1426 aa19.17■□□□□ 0.66
USP4-203ENST00000415188 ERICH6Q7L0X2 663 aa19.17■□□□□ 0.66
USP4-203ENST00000415188 IP6K1Q92551 441 aa19.17■□□□□ 0.66
USP4-203ENST00000415188 LTV1Q96GA3 475 aaPredicted RBP19.17■□□□□ 0.66
USP4-203ENST00000415188 MAP3K19Q56UN5 1328 aa19.16■□□□□ 0.66
USP4-203ENST00000415188 MTHFSP49914 203 aa19.16■□□□□ 0.66
USP4-203ENST00000415188 WWC1Q8IX03 1113 aa19.16■□□□□ 0.66
USP4-203ENST00000415188 IL2RBP14784 551 aa19.16■□□□□ 0.66
USP4-203ENST00000415188 NBPF14Q5TI25 921 aa19.16■□□□□ 0.66
USP4-203ENST00000415188 WDR63Q8IWG1 891 aa19.16■□□□□ 0.66
USP4-203ENST00000415188 PLSCR1O15162 318 aa19.15■□□□□ 0.66
USP4-203ENST00000415188 ANP32AP39687 249 aaKnown RBP19.15■□□□□ 0.66
USP4-203ENST00000415188 CENPQQ7L2Z9 268 aaPredicted RBP19.15■□□□□ 0.66
USP4-203ENST00000415188 GGNBP2Q9H3C7 697 aa19.15■□□□□ 0.66
USP4-203ENST00000415188 FYB1O15117 783 aa19.14■□□□□ 0.65
USP4-203ENST00000415188 KDM2BQ8NHM5 1336 aa19.13■□□□□ 0.65
USP4-203ENST00000415188 KCNQ2O43526 872 aa19.13■□□□□ 0.65
USP4-203ENST00000415188 HOXC9P31274 260 aa19.13■□□□□ 0.65
USP4-203ENST00000415188 COL3A1P02461 1466 aaPredicted RBP19.13■□□□□ 0.65
USP4-203ENST00000415188 AMPHP49418 695 aa19.12■□□□□ 0.65
USP4-203ENST00000415188 RRS1Q15050 365 aaKnown RBP19.12■□□□□ 0.65
USP4-203ENST00000415188 C20orf194Q5TEA3 1177 aa19.12■□□□□ 0.65
USP4-203ENST00000415188 PROM2Q8N271 834 aa19.12■□□□□ 0.65
USP4-203ENST00000415188 ACSBG1Q96GR2 724 aa19.12■□□□□ 0.65
USP4-203ENST00000415188 SPINK5Q9NQ38 1064 aaPredicted RBP19.12■□□□□ 0.65
USP4-203ENST00000415188 RGPD3A6NKT7 1758 aaPredicted RBP19.12■□□□□ 0.65
USP4-203ENST00000415188 RGPD4Q7Z3J3 1758 aa19.12■□□□□ 0.65
USP4-203ENST00000415188 PDE3AQ14432 1141 aa19.11■□□□□ 0.65
USP4-203ENST00000415188 ANO8Q9HCE9 1232 aaPredicted RBP19.11■□□□□ 0.65
USP4-203ENST00000415188 TNNT2P45379 298 aaPredicted RBP19.1■□□□□ 0.65
USP4-203ENST00000415188 AAMPQ13685 434 aa19.09■□□□□ 0.65
USP4-203ENST00000415188 TXNRD1Q16881 649 aa19.07■□□□□ 0.64
USP4-203ENST00000415188 BACH2Q9BYV9 841 aa19.07■□□□□ 0.64
USP4-203ENST00000415188 NHSQ6T4R5 1651 aa19.07■□□□□ 0.64
USP4-203ENST00000415188 FAM208AQ9UK61 1670 aaKnown RBP19.07■□□□□ 0.64
USP4-203ENST00000415188 RTL1A6NKG5 1358 aa19.06■□□□□ 0.64
USP4-203ENST00000415188 PDE4AP27815 886 aa19.06■□□□□ 0.64
USP4-203ENST00000415188 DDX54Q8TDD1 881 aaKnown RBP19.06■□□□□ 0.64
USP4-203ENST00000415188 IPO9Q96P70 1041 aaKnown RBP19.06■□□□□ 0.64
USP4-203ENST00000415188 MYH16Q9H6N6 1097 aa19.06■□□□□ 0.64
USP4-203ENST00000415188 NOP58Q9Y2X3 529 aaKnown RBP19.06■□□□□ 0.64
USP4-203ENST00000415188 RGPD2P0DJD1 1756 aa19.06■□□□□ 0.64
USP4-203ENST00000415188 CT47B1P0C2W7 299 aaPredicted RBP19.05■□□□□ 0.64
USP4-203ENST00000415188 PNNQ9H307 717 aaKnown RBP19.05■□□□□ 0.64
USP4-203ENST00000415188 U2AF1L5P0DN76 240 aaPredicted RBP19.04■□□□□ 0.64
USP4-203ENST00000415188 U2AF1Q01081 240 aaKnown RBP eCLIP19.04■□□□□ 0.64
USP4-203ENST00000415188 NBPF6Q5VWK0 638 aa19.03■□□□□ 0.64
USP4-203ENST00000415188 USHBP1Q8N6Y0 703 aa19.03■□□□□ 0.64
USP4-203ENST00000415188 NBPF4Q96M43 638 aa19.03■□□□□ 0.64
USP4-203ENST00000415188 PDGFDQ9GZP0 370 aaPredicted RBP19.03■□□□□ 0.64
USP4-203ENST00000415188 MEGF6O75095 1541 aa19.03■□□□□ 0.64
USP4-203ENST00000415188 BCAR3O75815 825 aa19.02■□□□□ 0.63
USP4-203ENST00000415188 HSP90AB2PQ58FF8 381 aa19.02■□□□□ 0.63
USP4-203ENST00000415188 IL16Q14005 1332 aa19.01■□□□□ 0.63
USP4-203ENST00000415188 SPON1Q9HCB6 807 aa19.01■□□□□ 0.63
USP4-203ENST00000415188 BTAF1O14981 1849 aa19■□□□□ 0.63
USP4-203ENST00000415188 RARSP54136 660 aaKnown RBP19■□□□□ 0.63
USP4-203ENST00000415188 STK32BQ9NY57 414 aa19■□□□□ 0.63
USP4-203ENST00000415188 EMILIN1Q9Y6C2 1016 aa19■□□□□ 0.63
USP4-203ENST00000415188 FLT4P35916 1363 aa19■□□□□ 0.63
USP4-203ENST00000415188 CASZ1Q86V15 1759 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms