RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 RREB1Q92766 1687 aa15.29■□□□□ 0.04
RFFL-204ENST00000414419 PTF1AQ7RTS3 328 aa15.29■□□□□ 0.04
RFFL-204ENST00000414419 NHSQ6T4R5 1651 aa15.28■□□□□ 0.04
RFFL-204ENST00000414419 MEGF6O75095 1541 aa15.28■□□□□ 0.04
RFFL-204ENST00000414419 KCNQ2O43526 872 aa15.28■□□□□ 0.04
RFFL-204ENST00000414419 R3HDM1Q15032 1099 aaKnown RBP15.28■□□□□ 0.04
RFFL-204ENST00000414419 NUP188Q5SRE5 1749 aa15.28■□□□□ 0.04
RFFL-204ENST00000414419 SYTL4Q96C24 671 aaPredicted RBP15.26■□□□□ 0.03
RFFL-204ENST00000414419 SHANK3Q9BYB0 1731 aa15.26■□□□□ 0.03
RFFL-204ENST00000414419 BTAF1O14981 1849 aa15.25■□□□□ 0.03
RFFL-204ENST00000414419 AMER1Q5JTC6 1135 aaPredicted RBP15.25■□□□□ 0.03
RFFL-204ENST00000414419 EYA1Q99502 592 aa15.25■□□□□ 0.03
RFFL-204ENST00000414419 PCDH11XQ9BZA7 1347 aa15.24■□□□□ 0.03
RFFL-204ENST00000414419 PCDH11YQ9BZA8 1340 aa15.24■□□□□ 0.03
RFFL-204ENST00000414419 EIF4A2Q14240 407 aaKnown RBP15.24■□□□□ 0.03
RFFL-204ENST00000414419 DOT1LQ8TEK3 1739 aa15.23■□□□□ 0.03
RFFL-204ENST00000414419 PER1O15534 1290 aaPredicted RBP15.23■□□□□ 0.03
RFFL-204ENST00000414419 TXNRD1Q16881 649 aa15.23■□□□□ 0.03
RFFL-204ENST00000414419 CC2D1BQ5T0F9 858 aaKnown RBP15.23■□□□□ 0.03
RFFL-204ENST00000414419 SPG7Q9UQ90 795 aa15.23■□□□□ 0.03
RFFL-204ENST00000414419 PRIM1P49642 420 aaKnown RBP15.22■□□□□ 0.03
RFFL-204ENST00000414419 CNGB1Q14028 1251 aaPredicted RBP15.22■□□□□ 0.03
RFFL-204ENST00000414419 PROM2Q8N271 834 aa15.21■□□□□ 0.03
RFFL-204ENST00000414419 PKD1L3Q7Z443 1732 aa15.2■□□□□ 0.02
RFFL-204ENST00000414419 NCAPD2Q15021 1401 aa15.2■□□□□ 0.02
RFFL-204ENST00000414419 STK32BQ9NY57 414 aa15.19■□□□□ 0.02
RFFL-204ENST00000414419 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.19■□□□□ 0.02
RFFL-204ENST00000414419 CYP27B1O15528 508 aa15.18■□□□□ 0.02
RFFL-204ENST00000414419 MTHFSP49914 203 aa15.18■□□□□ 0.02
RFFL-204ENST00000414419 NPC1L1Q9UHC9 1359 aa15.18■□□□□ 0.02
RFFL-204ENST00000414419 IGSF1Q8N6C5 1336 aa15.17■□□□□ 0.02
RFFL-204ENST00000414419 ITGB4P16144 1822 aa15.17■□□□□ 0.02
RFFL-204ENST00000414419 LRP5O75197 1615 aa15.17■□□□□ 0.02
RFFL-204ENST00000414419 SRCAPQ6ZRS2 3230 aa15.17■□□□□ 0.02
RFFL-204ENST00000414419 PLEKHO1Q53GL0 409 aaPredicted RBP15.16■□□□□ 0.02
RFFL-204ENST00000414419 SLC27A3Q5K4L6 730 aa15.16■□□□□ 0.02
RFFL-204ENST00000414419 MPRIPQ6WCQ1 1025 aa15.16■□□□□ 0.02
RFFL-204ENST00000414419 IFNL2Q8IZJ0 200 aa15.16■□□□□ 0.02
RFFL-204ENST00000414419 SLC15A2Q16348 729 aa15.15■□□□□ 0.02
RFFL-204ENST00000414419 ANO8Q9HCE9 1232 aaPredicted RBP15.15■□□□□ 0.02
RFFL-204ENST00000414419 PLEKHG2Q9H7P9 1386 aa15.14■□□□□ 0.01
RFFL-204ENST00000414419 IL13P35225 146 aa15.14■□□□□ 0.01
RFFL-204ENST00000414419 NKX1-1Q15270 411 aaPredicted RBP15.14■□□□□ 0.01
RFFL-204ENST00000414419 SULT6B1Q6IMI4 303 aa15.14■□□□□ 0.01
RFFL-204ENST00000414419 LY75O60449 1722 aa15.14■□□□□ 0.01
RFFL-204ENST00000414419 DIAPH1O60610 1272 aaKnown RBP15.13■□□□□ 0.01
RFFL-204ENST00000414419 PHKG2P15735 406 aa15.13■□□□□ 0.01
RFFL-204ENST00000414419 AMOTQ4VCS5 1084 aa15.13■□□□□ 0.01
RFFL-204ENST00000414419 HSP90AB1P08238 724 aaKnown RBP15.12■□□□□ 0.01
RFFL-204ENST00000414419 HMGB2P26583 209 aaKnown RBP15.12■□□□□ 0.01
RFFL-204ENST00000414419 AEBP1Q8IUX7 1158 aa15.12■□□□□ 0.01
RFFL-204ENST00000414419 SPON1Q9HCB6 807 aa15.12■□□□□ 0.01
RFFL-204ENST00000414419 LRRC4BQ9NT99 713 aa15.12■□□□□ 0.01
RFFL-204ENST00000414419 CCNL1Q9UK58 526 aaPredicted RBP15.12■□□□□ 0.01
RFFL-204ENST00000414419 TOGARAM1Q9Y4F4 1720 aa15.12■□□□□ 0.01
RFFL-204ENST00000414419 C1orf141Q5JVX7 400 aa15.11■□□□□ 0.01
RFFL-204ENST00000414419 ZNF530Q6P9A1 599 aaPredicted RBP15.11■□□□□ 0.01
RFFL-204ENST00000414419 SMARCC1Q92922 1105 aaPredicted RBP15.11■□□□□ 0.01
RFFL-204ENST00000414419 TMOD3Q9NYL9 352 aa15.11■□□□□ 0.01
RFFL-204ENST00000414419 CFAP53Q96M91 514 aa15.1■□□□□ 0.01
RFFL-204ENST00000414419 PPP1R1BQ9UD71 204 aaPredicted RBP15.1■□□□□ 0.01
RFFL-204ENST00000414419 KCNQ4P56696 695 aa15.09■□□□□ 0.01
RFFL-204ENST00000414419 PIGBQ92521 554 aa15.09■□□□□ 0.01
RFFL-204ENST00000414419 PAPPAQ13219 1627 aa15.09■□□□□ 0.01
RFFL-204ENST00000414419 KDRP35968 1356 aa15.09■□□□□ 0.01
RFFL-204ENST00000414419 PALLDQ8WX93 1383 aa15.09■□□□□ 0.01
RFFL-204ENST00000414419 CASZ1Q86V15 1759 aa15.08■□□□□ 0.01
RFFL-204ENST00000414419 U2SURPO15042 1029 aaKnown RBP15.08■□□□□ 0
RFFL-204ENST00000414419 HMOX1P09601 288 aa15.08■□□□□ 0
RFFL-204ENST00000414419 DCAF5Q96JK2 942 aa15.08■□□□□ 0
RFFL-204ENST00000414419 TFCP2L1Q9NZI6 479 aa15.08■□□□□ 0
RFFL-204ENST00000414419 ERVV-2B6SEH9 535 aa15.07■□□□□ 0
RFFL-204ENST00000414419 ZBTB7AO95365 584 aa15.07■□□□□ 0
RFFL-204ENST00000414419 ZNF827Q17R98 1081 aa15.07■□□□□ 0
RFFL-204ENST00000414419 PDGFDQ9GZP0 370 aaPredicted RBP15.07■□□□□ 0
RFFL-204ENST00000414419 AKT1S1Q96B36 256 aa15.06■□□□□ 0
RFFL-204ENST00000414419 QSER1Q2KHR3 1735 aa15.06■□□□□ 0
RFFL-204ENST00000414419 TAF1LQ8IZX4 1826 aa15.06■□□□□ 0
RFFL-204ENST00000414419 CABP4P57796 275 aa15.05■□□□□ -0
RFFL-204ENST00000414419 MTFR1LQ9H019 292 aa15.05■□□□□ -0
RFFL-204ENST00000414419 NUDCQ9Y266 331 aa15.05■□□□□ -0
RFFL-204ENST00000414419 ATF5Q9Y2D1 282 aaPredicted RBP15.05■□□□□ -0
RFFL-204ENST00000414419 C5P01031 1676 aa15.05■□□□□ -0
RFFL-204ENST00000414419 VIRMAQ69YN4 1812 aaKnown RBP15.04■□□□□ -0
RFFL-204ENST00000414419 PPP2R1AP30153 589 aa15.04■□□□□ -0
RFFL-204ENST00000414419 ZEB1P37275 1124 aaPredicted RBP15.04■□□□□ -0
RFFL-204ENST00000414419 AKAP4Q5JQC9 854 aa15.04■□□□□ -0
RFFL-204ENST00000414419 TUBGCP6Q96RT7 1819 aa15.03■□□□□ -0
RFFL-204ENST00000414419 MSH5O43196 834 aa15.03■□□□□ -0
RFFL-204ENST00000414419 ASAP1Q9ULH1 1129 aa15.03■□□□□ -0
RFFL-204ENST00000414419 SCN11AQ9UI33 1791 aa15.03■□□□□ -0
RFFL-204ENST00000414419 COL3A1P02461 1466 aaPredicted RBP15.02■□□□□ -0
RFFL-204ENST00000414419 LOC102724428A0A0B4J2F2 783 aa15.02■□□□□ -0
RFFL-204ENST00000414419 SIK1P57059 783 aa15.02■□□□□ -0
RFFL-204ENST00000414419 SLC16A10Q8TF71 515 aa15.02■□□□□ -0
RFFL-204ENST00000414419 ATG3Q9NT62 314 aa15.02■□□□□ -0
RFFL-204ENST00000414419 KDM6AO15550 1401 aaPredicted RBP15.01□□□□□ -0.01
RFFL-204ENST00000414419 PNPLA7Q6ZV29 1317 aa15.01□□□□□ -0.01
RFFL-204ENST00000414419 ATP6V1AP38606 617 aa15.01□□□□□ -0.01
RFFL-204ENST00000414419 AK7Q96M32 723 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms