RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 GGNBP2Q9H3C7 697 aa39.84■■■■□ 3.97
HMGB1-205ENST00000399494 RGPD2P0DJD1 1756 aa39.83■■■■□ 3.97
HMGB1-205ENST00000399494 NBPF6Q5VWK0 638 aa39.83■■■■□ 3.97
HMGB1-205ENST00000399494 SYTL4Q96C24 671 aaPredicted RBP39.83■■■■□ 3.97
HMGB1-205ENST00000399494 NBPF4Q96M43 638 aa39.83■■■■□ 3.97
HMGB1-205ENST00000399494 RTL1A6NKG5 1358 aa39.81■■■■□ 3.96
HMGB1-205ENST00000399494 USP47Q96K76 1375 aa39.8■■■■□ 3.96
HMGB1-205ENST00000399494 MEGF6O75095 1541 aa39.79■■■■□ 3.96
HMGB1-205ENST00000399494 KCNQ4P56696 695 aa39.78■■■■□ 3.96
HMGB1-205ENST00000399494 SLC16A10Q8TF71 515 aa39.78■■■■□ 3.96
HMGB1-205ENST00000399494 NSD2O96028 1365 aa39.77■■■■□ 3.96
HMGB1-205ENST00000399494 SHANK3Q9BYB0 1731 aa39.75■■■■□ 3.95
HMGB1-205ENST00000399494 MAP3K5Q99683 1374 aa39.74■■■■□ 3.95
HMGB1-205ENST00000399494 PNPLA7Q6ZV29 1317 aa39.74■■■■□ 3.95
HMGB1-205ENST00000399494 USHBP1Q8N6Y0 703 aa39.74■■■■□ 3.95
HMGB1-205ENST00000399494 CGNL1Q0VF96 1302 aa39.72■■■■□ 3.95
HMGB1-205ENST00000399494 DOT1LQ8TEK3 1739 aa39.72■■■■□ 3.95
HMGB1-205ENST00000399494 TFCP2L1Q9NZI6 479 aa39.72■■■■□ 3.95
HMGB1-205ENST00000399494 QSER1Q2KHR3 1735 aa39.71■■■■□ 3.95
HMGB1-205ENST00000399494 CDCA8Q53HL2 280 aa39.7■■■■□ 3.95
HMGB1-205ENST00000399494 HSP90AB2PQ58FF8 381 aa39.7■■■■□ 3.95
HMGB1-205ENST00000399494 RAPGEF4Q8WZA2 1011 aa39.69■■■■□ 3.94
HMGB1-205ENST00000399494 INSRP06213 1382 aa39.68■■■■□ 3.94
HMGB1-205ENST00000399494 LY75O60449 1722 aa39.68■■■■□ 3.94
HMGB1-205ENST00000399494 SMG6Q86US8 1419 aaKnown RBP39.66■■■■□ 3.94
HMGB1-205ENST00000399494 UTRNP46939 3433 aa39.66■■■■□ 3.94
HMGB1-205ENST00000399494 CARD14Q9BXL6 1004 aa39.66■■■■□ 3.94
HMGB1-205ENST00000399494 TATP17735 454 aaPredicted RBP39.65■■■■□ 3.94
HMGB1-205ENST00000399494 CCNL1Q9UK58 526 aaPredicted RBP39.65■■■■□ 3.94
HMGB1-205ENST00000399494 POLD1P28340 1107 aa39.64■■■■□ 3.94
HMGB1-205ENST00000399494 ZNF784Q8NCA9 323 aaPredicted RBP39.64■■■■□ 3.94
HMGB1-205ENST00000399494 COL24A1Q17RW2 1714 aa39.62■■■■□ 3.93
HMGB1-205ENST00000399494 KIF24Q5T7B8 1368 aa39.62■■■■□ 3.93
HMGB1-205ENST00000399494 FLT4P35916 1363 aa39.61■■■■□ 3.93
HMGB1-205ENST00000399494 TUBGCP6Q96RT7 1819 aa39.61■■■■□ 3.93
HMGB1-205ENST00000399494 KIF20BQ96Q89 1820 aa39.59■■■■□ 3.93
HMGB1-205ENST00000399494 EMILIN1Q9Y6C2 1016 aa39.56■■■■□ 3.92
HMGB1-205ENST00000399494 PCDH11XQ9BZA7 1347 aa39.56■■■■□ 3.92
HMGB1-205ENST00000399494 PCDH11YQ9BZA8 1340 aa39.56■■■■□ 3.92
HMGB1-205ENST00000399494 GPR162Q16538 588 aa39.55■■■■□ 3.92
HMGB1-205ENST00000399494 KLHL34Q8N239 644 aa39.55■■■■□ 3.92
HMGB1-205ENST00000399494 COL23A1Q86Y22 540 aaPredicted RBP39.54■■■■□ 3.92
HMGB1-205ENST00000399494 CHD4Q14839 1912 aa39.53■■■■□ 3.92
HMGB1-205ENST00000399494 CYP27B1O15528 508 aa39.53■■■■□ 3.92
HMGB1-205ENST00000399494 NSD3Q9BZ95 1437 aa39.52■■■■□ 3.92
HMGB1-205ENST00000399494 MSH5O43196 834 aa39.49■■■■□ 3.91
HMGB1-205ENST00000399494 MPRIPQ6WCQ1 1025 aa39.49■■■■□ 3.91
HMGB1-205ENST00000399494 NLGN2Q8NFZ4 835 aa39.47■■■■□ 3.91
HMGB1-205ENST00000399494 PALLDQ8WX93 1383 aa39.45■■■■□ 3.91
HMGB1-205ENST00000399494 PPM1GO15355 546 aaPredicted RBP39.44■■■■□ 3.9
HMGB1-205ENST00000399494 HMGB2P26583 209 aaKnown RBP39.43■■■■□ 3.9
HMGB1-205ENST00000399494 WASHC2AQ641Q2 1341 aa39.42■■■■□ 3.9
HMGB1-205ENST00000399494 NCAPD2Q15021 1401 aa39.42■■■■□ 3.9
HMGB1-205ENST00000399494 NKX1-1Q15270 411 aaPredicted RBP39.41■■■■□ 3.9
HMGB1-205ENST00000399494 PELP1Q8IZL8 1130 aaKnown RBP39.41■■■■□ 3.9
HMGB1-205ENST00000399494 C5P01031 1676 aa39.4■■■■□ 3.9
HMGB1-205ENST00000399494 SMARCC1Q92922 1105 aaPredicted RBP39.39■■■■□ 3.9
HMGB1-205ENST00000399494 MSL1Q68DK7 614 aa39.38■■■■□ 3.89
HMGB1-205ENST00000399494 FLAD1Q8NFF5 587 aa39.38■■■■□ 3.89
HMGB1-205ENST00000399494 PIGBQ92521 554 aa39.38■■■■□ 3.89
HMGB1-205ENST00000399494 EYA1Q99502 592 aa39.38■■■■□ 3.89
HMGB1-205ENST00000399494 PKD1L3Q7Z443 1732 aa39.37■■■■□ 3.89
HMGB1-205ENST00000399494 SPG7Q9UQ90 795 aa39.37■■■■□ 3.89
HMGB1-205ENST00000399494 TOGARAM1Q9Y4F4 1720 aa39.37■■■■□ 3.89
HMGB1-205ENST00000399494 POLKQ9UBT6 870 aa39.36■■■■□ 3.89
HMGB1-205ENST00000399494 ITGB4P16144 1822 aa39.35■■■■□ 3.89
HMGB1-205ENST00000399494 TAF1LQ8IZX4 1826 aa39.35■■■■□ 3.89
HMGB1-205ENST00000399494 ANKRD26Q9UPS8 1709 aa39.34■■■■□ 3.89
HMGB1-205ENST00000399494 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP39.33■■■■□ 3.896e-7■■□□□ 13.1
HMGB1-205ENST00000399494 MAP2P11137 1827 aaKnown RBP39.33■■■■□ 3.89
HMGB1-205ENST00000399494 YBX3P16989 372 aaKnown RBP eCLIP39.31■■■■□ 3.886e-17■■□□□ 12.5
HMGB1-205ENST00000399494 GOLGB1Q14789 3259 aaKnown RBP39.31■■■■□ 3.88
HMGB1-205ENST00000399494 AMIGO3Q86WK7 504 aa39.29■■■■□ 3.88
HMGB1-205ENST00000399494 GRIN3BO60391 1043 aa39.27■■■■□ 3.88
HMGB1-205ENST00000399494 C4BP0C0L5 1744 aa39.27■■■■□ 3.88
HMGB1-205ENST00000399494 AK7Q96M32 723 aa39.27■■■■□ 3.88
HMGB1-205ENST00000399494 C1QTNF8P60827 252 aa39.26■■■■□ 3.88
HMGB1-205ENST00000399494 POLR3GLQ9BT43 218 aa39.26■■■■□ 3.88
HMGB1-205ENST00000399494 CD2APQ9Y5K6 639 aa39.26■■■■□ 3.88
HMGB1-205ENST00000399494 PHKG2P15735 406 aa39.24■■■■□ 3.87
HMGB1-205ENST00000399494 SMIM5Q71RC9 77 aa39.24■■■■□ 3.87
HMGB1-205ENST00000399494 IFNL2Q8IZJ0 200 aa39.24■■■■□ 3.87
HMGB1-205ENST00000399494 LOC102724428A0A0B4J2F2 783 aa39.23■■■■□ 3.87
HMGB1-205ENST00000399494 SIK1P57059 783 aa39.23■■■■□ 3.87
HMGB1-205ENST00000399494 EIF4A2Q14240 407 aaKnown RBP39.23■■■■□ 3.87
HMGB1-205ENST00000399494 TMOD3Q9NYL9 352 aa39.23■■■■□ 3.87
HMGB1-205ENST00000399494 TNNT2P45379 298 aaPredicted RBP39.22■■■■□ 3.87
HMGB1-205ENST00000399494 EIF4G2P78344 907 aaKnown RBP eCLIP39.22■■■■□ 3.87
HMGB1-205ENST00000399494 LINC00116Q8NCU8 138 aa39.21■■■■□ 3.87
HMGB1-205ENST00000399494 ASAP1Q9ULH1 1129 aa39.21■■■■□ 3.87
HMGB1-205ENST00000399494 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP39.2■■■■□ 3.87
HMGB1-205ENST00000399494 PHF14O94880 888 aa39.19■■■■□ 3.86
HMGB1-205ENST00000399494 UBR3Q6ZT12 1888 aa39.17■■■■□ 3.86
HMGB1-205ENST00000399494 SSFA2P28290 1259 aa39.16■■■■□ 3.86
HMGB1-205ENST00000399494 ITPK1Q13572 414 aa39.16■■■■□ 3.86
HMGB1-205ENST00000399494 ATG3Q9NT62 314 aa39.14■■■■□ 3.86
HMGB1-205ENST00000399494 HSPA5P11021 654 aaKnown RBP39.13■■■■□ 3.85
HMGB1-205ENST00000399494 ATP6V1AP38606 617 aa39.13■■■■□ 3.85
HMGB1-205ENST00000399494 PANK3Q9H999 370 aa39.13■■■■□ 3.85
HMGB1-205ENST00000399494 SENP3-EIF4A1A0A087X0R7 540 aa39.12■■■■□ 3.85
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms