RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SOS2Q07890 1332 aaPredicted RBP7.25□□□□□ -1.25
HMGB1-204ENST00000399489 TTLL8A6PVC2 850 aa7.24□□□□□ -1.25
HMGB1-204ENST00000399489 ZNF385CQ66K41 422 aaPredicted RBP7.24□□□□□ -1.25
HMGB1-204ENST00000399489 SUPT5HO00267 1087 aaKnown RBP7.24□□□□□ -1.25
HMGB1-204ENST00000399489 ARHGEF15O94989 841 aa7.24□□□□□ -1.25
HMGB1-204ENST00000399489 INTS6LQ5JSJ4 861 aaKnown RBP7.24□□□□□ -1.25
HMGB1-204ENST00000399489 FBXO31Q5XUX0 539 aaPredicted RBP7.24□□□□□ -1.25
HMGB1-204ENST00000399489 Q6ZVU0 165 aa7.24□□□□□ -1.25
HMGB1-204ENST00000399489 BAG6P46379 1132 aa7.23□□□□□ -1.25
HMGB1-204ENST00000399489 IL27Q8NEV9 243 aa7.23□□□□□ -1.25
HMGB1-204ENST00000399489 ZNF592Q92610 1267 aa7.23□□□□□ -1.25
HMGB1-204ENST00000399489 DCAF5Q96JK2 942 aa7.23□□□□□ -1.25
HMGB1-204ENST00000399489 RAB15P59190 212 aa7.22□□□□□ -1.25
HMGB1-204ENST00000399489 CBLBQ13191 982 aa7.22□□□□□ -1.25
HMGB1-204ENST00000399489 HMX1Q9NP08 348 aaPredicted RBP7.22□□□□□ -1.25
HMGB1-204ENST00000399489 APBB1O00213 710 aa7.21□□□□□ -1.25
HMGB1-204ENST00000399489 SPINT1O43278 529 aa7.21□□□□□ -1.25
HMGB1-204ENST00000399489 PPFIA3O75145 1194 aa7.21□□□□□ -1.25
HMGB1-204ENST00000399489 EPS8L1Q8TE68 723 aa7.21□□□□□ -1.25
HMGB1-204ENST00000399489 DNMT3LQ9UJW3 386 aa7.21□□□□□ -1.25
HMGB1-204ENST00000399489 CCDC125Q86Z20 511 aa7.21□□□□□ -1.26
HMGB1-204ENST00000399489 FIGNL2A6NMB9 653 aa7.2□□□□□ -1.26
HMGB1-204ENST00000399489 RELBQ01201 579 aa7.2□□□□□ -1.26
HMGB1-204ENST00000399489 SEPT12Q8IYM1 358 aa7.2□□□□□ -1.26
HMGB1-204ENST00000399489 SVOPQ8N4V2 548 aa7.2□□□□□ -1.26
HMGB1-204ENST00000399489 POLMQ9NP87 494 aaPredicted RBP7.2□□□□□ -1.26
HMGB1-204ENST00000399489 ZNF330Q9Y3S2 320 aaPredicted RBP7.2□□□□□ -1.26
HMGB1-204ENST00000399489 ZBBXA8MT70 800 aa7.19□□□□□ -1.26
HMGB1-204ENST00000399489 PCDHB9Q9Y5E1 797 aa7.19□□□□□ -1.26
HMGB1-204ENST00000399489 MCCD1P59942 119 aaPredicted RBP7.18□□□□□ -1.26
HMGB1-204ENST00000399489 NPM2Q86SE8 214 aaKnown RBP7.18□□□□□ -1.26
HMGB1-204ENST00000399489 OCSTAMPQ9BR26 566 aa7.18□□□□□ -1.26
HMGB1-204ENST00000399489 ADH1AP07327 375 aa7.18□□□□□ -1.26
HMGB1-204ENST00000399489 PTSQ03393 145 aa7.18□□□□□ -1.26
HMGB1-204ENST00000399489 AGBL1Q96MI9 1066 aa7.18□□□□□ -1.26
HMGB1-204ENST00000399489 ERVH48-1M5A8F1 160 aa7.17□□□□□ -1.26
HMGB1-204ENST00000399489 YBX3P16989 372 aaKnown RBP eCLIP7.17□□□□□ -1.266e-17■■□□□ 12.5
HMGB1-204ENST00000399489 RNF20Q5VTR2 975 aa7.17□□□□□ -1.26
HMGB1-204ENST00000399489 ZNF784Q8NCA9 323 aaPredicted RBP7.17□□□□□ -1.26
HMGB1-204ENST00000399489 BANK1Q8NDB2 785 aa7.17□□□□□ -1.26
HMGB1-204ENST00000399489 TMPRSS4Q9NRS4 437 aa7.17□□□□□ -1.26
HMGB1-204ENST00000399489 ESPNB1AK53 854 aa7.16□□□□□ -1.26
HMGB1-204ENST00000399489 TRIM34Q9BYJ4 488 aa7.16□□□□□ -1.26
HMGB1-204ENST00000399489 ESF1Q9H501 851 aaKnown RBP7.16□□□□□ -1.26
HMGB1-204ENST00000399489 UBTFP17480 764 aaKnown RBP7.15□□□□□ -1.26
HMGB1-204ENST00000399489 PTGIRP43119 386 aa7.15□□□□□ -1.26
HMGB1-204ENST00000399489 TRIM26Q12899 539 aaPredicted RBP7.15□□□□□ -1.26
HMGB1-204ENST00000399489 INSM2Q96T92 566 aaPredicted RBP7.15□□□□□ -1.26
HMGB1-204ENST00000399489 ZNF395Q9H8N7 513 aaPredicted RBP7.15□□□□□ -1.26
HMGB1-204ENST00000399489 BRPF1P55201 1214 aaPredicted RBP7.15□□□□□ -1.27
HMGB1-204ENST00000399489 KRT76Q01546 638 aa7.15□□□□□ -1.27
HMGB1-204ENST00000399489 CCDC155Q8N6L0 562 aa7.15□□□□□ -1.27
HMGB1-204ENST00000399489 PRM3Q9NNZ6 103 aa7.15□□□□□ -1.27
HMGB1-204ENST00000399489 FURINP09958 794 aa7.14□□□□□ -1.27
HMGB1-204ENST00000399489 CTSOP43234 321 aaPredicted RBP7.14□□□□□ -1.27
HMGB1-204ENST00000399489 NR1H3Q13133 447 aa7.13□□□□□ -1.27
HMGB1-204ENST00000399489 CYLDQ9NQC7 956 aa7.13□□□□□ -1.27
HMGB1-204ENST00000399489 NDUFB9Q9Y6M9 179 aa7.13□□□□□ -1.27
HMGB1-204ENST00000399489 SOCS7O14512 581 aa7.13□□□□□ -1.27
HMGB1-204ENST00000399489 SV2AQ7L0J3 742 aa7.13□□□□□ -1.27
HMGB1-204ENST00000399489 SLC35F4A4IF30 521 aa7.12□□□□□ -1.27
HMGB1-204ENST00000399489 LILRA1O75019 489 aa7.12□□□□□ -1.27
HMGB1-204ENST00000399489 FBXO45P0C2W1 286 aa7.12□□□□□ -1.27
HMGB1-204ENST00000399489 LYSMD3Q7Z3D4 306 aa7.12□□□□□ -1.27
HMGB1-204ENST00000399489 RNF217Q8TC41 542 aa7.12□□□□□ -1.27
HMGB1-204ENST00000399489 NANOS1Q8WY41 292 aaKnown RBP7.12□□□□□ -1.27
HMGB1-204ENST00000399489 GJD4Q96KN9 370 aaPredicted RBP7.12□□□□□ -1.27
HMGB1-204ENST00000399489 CNTNAP3BQ96NU0 1288 aa7.12□□□□□ -1.27
HMGB1-204ENST00000399489 CNTNAP3Q9BZ76 1288 aa7.12□□□□□ -1.27
HMGB1-204ENST00000399489 CDC14CA4D256 554 aa7.11□□□□□ -1.27
HMGB1-204ENST00000399489 ATP5J2-PTCD1G3V325 749 aa7.11□□□□□ -1.27
HMGB1-204ENST00000399489 GIGYF1O75420 1035 aaPredicted RBP7.11□□□□□ -1.27
HMGB1-204ENST00000399489 ITGA6P23229 1130 aa7.1□□□□□ -1.27
HMGB1-204ENST00000399489 ADD1P35611 737 aaKnown RBP7.1□□□□□ -1.27
HMGB1-204ENST00000399489 CC2D2BQ6DHV5 1058 aa7.1□□□□□ -1.27
HMGB1-204ENST00000399489 CYP2U1Q7Z449 544 aa7.1□□□□□ -1.27
HMGB1-204ENST00000399489 VWA5B2Q8N398 1253 aa7.1□□□□□ -1.27
HMGB1-204ENST00000399489 NLRP3Q96P20 1036 aa7.1□□□□□ -1.27
HMGB1-204ENST00000399489 COL25A1Q9BXS0 654 aaPredicted RBP7.1□□□□□ -1.27
HMGB1-204ENST00000399489 MEN1O00255 615 aa7.09□□□□□ -1.27
HMGB1-204ENST00000399489 PHF20L1A8MW92 1017 aa7.08□□□□□ -1.28
HMGB1-204ENST00000399489 GPC1P35052 558 aa7.08□□□□□ -1.28
HMGB1-204ENST00000399489 RNF144AP50876 292 aaPredicted RBP7.08□□□□□ -1.28
HMGB1-204ENST00000399489 ZMYM1Q5SVZ6 1142 aa7.08□□□□□ -1.28
HMGB1-204ENST00000399489 FOXD4L5Q5VV16 416 aaPredicted RBP7.08□□□□□ -1.28
HMGB1-204ENST00000399489 PCDHB11Q9Y5F2 797 aa7.07□□□□□ -1.28
HMGB1-204ENST00000399489 SLC27A3Q5K4L6 730 aa7.07□□□□□ -1.28
HMGB1-204ENST00000399489 FOXR1Q6PIV2 292 aa7.07□□□□□ -1.28
HMGB1-204ENST00000399489 GPR161Q8N6U8 529 aaKnown RBP7.07□□□□□ -1.28
HMGB1-204ENST00000399489 MYCP01106 439 aaPredicted RBP7.06□□□□□ -1.28
HMGB1-204ENST00000399489 ERVK-9P63128 1117 aa7.06□□□□□ -1.28
HMGB1-204ENST00000399489 PRICKLE2Q7Z3G6 844 aa7.06□□□□□ -1.28
HMGB1-204ENST00000399489 MTMR14Q8NCE2 650 aa7.06□□□□□ -1.28
HMGB1-204ENST00000399489 GMCL1Q96IK5 515 aa7.06□□□□□ -1.28
HMGB1-204ENST00000399489 FZD5Q13467 585 aa7.05□□□□□ -1.28
HMGB1-204ENST00000399489 A0A1W2PRU2 124 aa7.04□□□□□ -1.28
HMGB1-204ENST00000399489 GTF2E1P29083 439 aaPredicted RBP7.04□□□□□ -1.28
HMGB1-204ENST00000399489 KDF1Q8NAX2 398 aaPredicted RBP7.04□□□□□ -1.28
HMGB1-204ENST00000399489 WHAMMQ8TF30 809 aa7.04□□□□□ -1.28
HMGB1-204ENST00000399489 SNRKQ9NRH2 765 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms