RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 RGPD2P0DJD1 1756 aa22.86■■□□□ 1.25
CUX2-202ENST00000397643 LTV1Q96GA3 475 aaPredicted RBP22.86■■□□□ 1.25
CUX2-202ENST00000397643 MAP3K19Q56UN5 1328 aa22.85■■□□□ 1.25
CUX2-202ENST00000397643 POLD1P28340 1107 aa22.85■■□□□ 1.25
CUX2-202ENST00000397643 PRIM1P49642 420 aaKnown RBP22.85■■□□□ 1.25
CUX2-202ENST00000397643 HOXC9P31274 260 aa22.84■■□□□ 1.25
CUX2-202ENST00000397643 NLGN2Q8NFZ4 835 aa22.84■■□□□ 1.25
CUX2-202ENST00000397643 KLHL34Q8N239 644 aa22.83■■□□□ 1.25
CUX2-202ENST00000397643 SYTL4Q96C24 671 aaPredicted RBP22.83■■□□□ 1.25
CUX2-202ENST00000397643 TFCP2L1Q9NZI6 479 aa22.83■■□□□ 1.25
CUX2-202ENST00000397643 FBLN1P23142 703 aa22.82■■□□□ 1.24
CUX2-202ENST00000397643 TESK2Q96S53 571 aa22.81■■□□□ 1.24
CUX2-202ENST00000397643 ZCRB1Q8TBF4 217 aaKnown RBP22.79■■□□□ 1.24
CUX2-202ENST00000397643 PELP1Q8IZL8 1130 aaKnown RBP22.78■■□□□ 1.24
CUX2-202ENST00000397643 COG3Q96JB2 828 aa22.78■■□□□ 1.24
CUX2-202ENST00000397643 CCNL1Q9UK58 526 aaPredicted RBP22.78■■□□□ 1.24
CUX2-202ENST00000397643 RTL1A6NKG5 1358 aa22.77■■□□□ 1.24
CUX2-202ENST00000397643 YBX3P16989 372 aaKnown RBP eCLIP22.77■■□□□ 1.24
CUX2-202ENST00000397643 GIGYF1O75420 1035 aaPredicted RBP22.76■■□□□ 1.23
CUX2-202ENST00000397643 AMPHP49418 695 aa22.76■■□□□ 1.23
CUX2-202ENST00000397643 COL23A1Q86Y22 540 aaPredicted RBP22.76■■□□□ 1.23
CUX2-202ENST00000397643 C5P01031 1676 aa22.74■■□□□ 1.23
CUX2-202ENST00000397643 NBPF6Q5VWK0 638 aa22.74■■□□□ 1.23
CUX2-202ENST00000397643 NBPF4Q96M43 638 aa22.74■■□□□ 1.23
CUX2-202ENST00000397643 USP47Q96K76 1375 aa22.74■■□□□ 1.23
CUX2-202ENST00000397643 CEP350Q5VT06 3117 aa22.73■■□□□ 1.23
CUX2-202ENST00000397643 ST20-MTHFSA0A0A6YYL1 179 aa22.72■■□□□ 1.23
CUX2-202ENST00000397643 RRS1Q15050 365 aaKnown RBP22.72■■□□□ 1.23
CUX2-202ENST00000397643 USHBP1Q8N6Y0 703 aa22.72■■□□□ 1.23
CUX2-202ENST00000397643 TONSLQ96HA7 1378 aa22.72■■□□□ 1.23
CUX2-202ENST00000397643 CGNL1Q0VF96 1302 aa22.71■■□□□ 1.23
CUX2-202ENST00000397643 TAF1LQ8IZX4 1826 aa22.71■■□□□ 1.23
CUX2-202ENST00000397643 MSL1Q68DK7 614 aa22.7■■□□□ 1.22
CUX2-202ENST00000397643 GRIN3BO60391 1043 aa22.69■■□□□ 1.22
CUX2-202ENST00000397643 TOGARAM1Q9Y4F4 1720 aa22.68■■□□□ 1.22
CUX2-202ENST00000397643 FYB1O15117 783 aa22.68■■□□□ 1.22
CUX2-202ENST00000397643 MSH5O43196 834 aa22.68■■□□□ 1.22
CUX2-202ENST00000397643 SMG6Q86US8 1419 aaKnown RBP22.66■■□□□ 1.22
CUX2-202ENST00000397643 PALLDQ8WX93 1383 aa22.66■■□□□ 1.22
CUX2-202ENST00000397643 RAPGEF4Q8WZA2 1011 aa22.66■■□□□ 1.22
CUX2-202ENST00000397643 GGNBP2Q9H3C7 697 aa22.66■■□□□ 1.22
CUX2-202ENST00000397643 ATP10DQ9P241 1426 aa22.65■■□□□ 1.22
CUX2-202ENST00000397643 INSRP06213 1382 aa22.65■■□□□ 1.22
CUX2-202ENST00000397643 PCDH11XQ9BZA7 1347 aa22.64■■□□□ 1.22
CUX2-202ENST00000397643 PCDH11YQ9BZA8 1340 aa22.64■■□□□ 1.22
CUX2-202ENST00000397643 HSP90AB2PQ58FF8 381 aa22.64■■□□□ 1.21
CUX2-202ENST00000397643 CD2APQ9Y5K6 639 aa22.64■■□□□ 1.21
CUX2-202ENST00000397643 C4BP0C0L5 1744 aa22.64■■□□□ 1.21
CUX2-202ENST00000397643 ADCY9O60503 1353 aa22.63■■□□□ 1.21
CUX2-202ENST00000397643 PKD1L3Q7Z443 1732 aa22.63■■□□□ 1.21
CUX2-202ENST00000397643 CYP27B1O15528 508 aa22.63■■□□□ 1.21
CUX2-202ENST00000397643 TATP17735 454 aaPredicted RBP22.63■■□□□ 1.21
CUX2-202ENST00000397643 AMIGO3Q86WK7 504 aa22.63■■□□□ 1.21
CUX2-202ENST00000397643 PCGF6Q9BYE7 350 aa22.63■■□□□ 1.21
CUX2-202ENST00000397643 ITGB4P16144 1822 aa22.63■■□□□ 1.21
CUX2-202ENST00000397643 KIF20BQ96Q89 1820 aa22.63■■□□□ 1.21
CUX2-202ENST00000397643 UBR3Q6ZT12 1888 aa22.62■■□□□ 1.21
CUX2-202ENST00000397643 FLT4P35916 1363 aa22.62■■□□□ 1.21
CUX2-202ENST00000397643 SLC24A1O60721 1099 aa22.61■■□□□ 1.21
CUX2-202ENST00000397643 KIF24Q5T7B8 1368 aa22.61■■□□□ 1.21
CUX2-202ENST00000397643 NCAPD2Q15021 1401 aa22.6■■□□□ 1.21
CUX2-202ENST00000397643 MPRIPQ6WCQ1 1025 aa22.6■■□□□ 1.21
CUX2-202ENST00000397643 FLAD1Q8NFF5 587 aa22.6■■□□□ 1.21
CUX2-202ENST00000397643 MAP2P11137 1827 aaKnown RBP22.59■■□□□ 1.21
CUX2-202ENST00000397643 SMIM5Q71RC9 77 aa22.56■■□□□ 1.2
CUX2-202ENST00000397643 ANKRD26Q9UPS8 1709 aa22.55■■□□□ 1.2
CUX2-202ENST00000397643 HMGB2P26583 209 aaKnown RBP22.55■■□□□ 1.2
CUX2-202ENST00000397643 TMF1P82094 1093 aa22.55■■□□□ 1.2
CUX2-202ENST00000397643 IFFO2Q5TF58 517 aa22.55■■□□□ 1.2
CUX2-202ENST00000397643 PIGBQ92521 554 aa22.55■■□□□ 1.2
CUX2-202ENST00000397643 SMARCC1Q92922 1105 aaPredicted RBP22.54■■□□□ 1.2
CUX2-202ENST00000397643 AK7Q96M32 723 aa22.54■■□□□ 1.2
CUX2-202ENST00000397643 NKX1-1Q15270 411 aaPredicted RBP22.53■■□□□ 1.2
CUX2-202ENST00000397643 GPBP1L1Q9HC44 474 aaPredicted RBP22.53■■□□□ 1.2
CUX2-202ENST00000397643 EMILIN1Q9Y6C2 1016 aa22.53■■□□□ 1.2
CUX2-202ENST00000397643 IGSF1Q8N6C5 1336 aa22.53■■□□□ 1.2
CUX2-202ENST00000397643 NSD3Q9BZ95 1437 aa22.52■■□□□ 1.2
CUX2-202ENST00000397643 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.52■■□□□ 1.2
CUX2-202ENST00000397643 PHF14O94880 888 aa22.52■■□□□ 1.2
CUX2-202ENST00000397643 CARD14Q9BXL6 1004 aa22.52■■□□□ 1.2
CUX2-202ENST00000397643 LINC00116Q8NCU8 138 aa22.51■■□□□ 1.19
CUX2-202ENST00000397643 CICQ96RK0 1608 aaPredicted RBP22.5■■□□□ 1.19
CUX2-202ENST00000397643 SSFA2P28290 1259 aa22.5■■□□□ 1.19
CUX2-202ENST00000397643 LOC102724428A0A0B4J2F2 783 aa22.49■■□□□ 1.19
CUX2-202ENST00000397643 SIK1P57059 783 aa22.49■■□□□ 1.19
CUX2-202ENST00000397643 WWC3Q9ULE0 1092 aa22.49■■□□□ 1.19
CUX2-202ENST00000397643 HSPA6P17066 643 aa22.48■■□□□ 1.19
CUX2-202ENST00000397643 ZNF526Q8TF50 670 aaPredicted RBP22.48■■□□□ 1.19
CUX2-202ENST00000397643 ITPK1Q13572 414 aa22.47■■□□□ 1.19
CUX2-202ENST00000397643 KIAA1551Q9HCM1 1747 aa22.46■■□□□ 1.19
CUX2-202ENST00000397643 ASAP1Q9ULH1 1129 aa22.45■■□□□ 1.18
CUX2-202ENST00000397643 SPG7Q9UQ90 795 aa22.45■■□□□ 1.18
CUX2-202ENST00000397643 WASHC2AQ641Q2 1341 aa22.45■■□□□ 1.18
CUX2-202ENST00000397643 KIF13BQ9NQT8 1826 aa22.45■■□□□ 1.18
CUX2-202ENST00000397643 EYA1Q99502 592 aa22.44■■□□□ 1.18
CUX2-202ENST00000397643 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.44■■□□□ 1.18
CUX2-202ENST00000397643 PXDNLA1KZ92 1463 aa22.43■■□□□ 1.18
CUX2-202ENST00000397643 GNPATO15228 680 aa22.43■■□□□ 1.18
CUX2-202ENST00000397643 CDCA8Q53HL2 280 aa22.43■■□□□ 1.18
CUX2-202ENST00000397643 TMOD3Q9NYL9 352 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms