RNA–Protein interactions for RNA: ENST00000397442.5

CPNE1-203, Transcript of copine 1, humanhuman

TSL 5 BASIC

Gene CPNE1, Length 1,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-203ENST00000397442 CRB1P82279 1406 aa35.91■■■■□ 3.34
CPNE1-203ENST00000397442 NRAPQ86VF7 1730 aa35.91■■■■□ 3.34
CPNE1-203ENST00000397442 PLEKHG2Q9H7P9 1386 aa35.91■■■■□ 3.34
CPNE1-203ENST00000397442 AMOTQ4VCS5 1084 aa35.91■■■■□ 3.34
CPNE1-203ENST00000397442 PLEKHO1Q53GL0 409 aaPredicted RBP35.91■■■■□ 3.34
CPNE1-203ENST00000397442 MAP3K5Q99683 1374 aa35.88■■■■□ 3.34
CPNE1-203ENST00000397442 LRP6O75581 1613 aa35.88■■■■□ 3.33
CPNE1-203ENST00000397442 HTATSF1O43719 755 aaKnown RBP35.88■■■■□ 3.33
CPNE1-203ENST00000397442 MCM10Q7L590 875 aa35.88■■■■□ 3.33
CPNE1-203ENST00000397442 SLIT2O94813 1529 aa35.87■■■■□ 3.33
CPNE1-203ENST00000397442 NWD2Q9ULI1 1742 aa35.87■■■■□ 3.33
CPNE1-203ENST00000397442 GNAT3A8MTJ3 354 aa35.87■■■■□ 3.33
CPNE1-203ENST00000397442 TATP17735 454 aaPredicted RBP35.87■■■■□ 3.33
CPNE1-203ENST00000397442 CALD1Q05682 793 aaKnown RBP35.86■■■■□ 3.33
CPNE1-203ENST00000397442 MYH16Q9H6N6 1097 aa35.86■■■■□ 3.33
CPNE1-203ENST00000397442 PKD1L3Q7Z443 1732 aa35.86■■■■□ 3.33
CPNE1-203ENST00000397442 PARP4Q9UKK3 1724 aaKnown RBP35.84■■■■□ 3.33
CPNE1-203ENST00000397442 ZNF530Q6P9A1 599 aaPredicted RBP35.84■■■■□ 3.33
CPNE1-203ENST00000397442 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP35.84■■■■□ 3.331e-6■■□□□ 12.2
CPNE1-203ENST00000397442 LRRC37A3O60309 1634 aa35.83■■■■□ 3.33
CPNE1-203ENST00000397442 OVOS2A0A0G2JMS6 1433 aa35.83■■■■□ 3.33
CPNE1-203ENST00000397442 ZNF853P0CG23 659 aa35.83■■■■□ 3.33
CPNE1-203ENST00000397442 RTF1Q92541 710 aaKnown RBP35.83■■■■□ 3.33
CPNE1-203ENST00000397442 FANCIQ9NVI1 1328 aa35.83■■■■□ 3.33
CPNE1-203ENST00000397442 TSR2Q969E8 191 aaKnown RBP35.81■■■■□ 3.32
CPNE1-203ENST00000397442 SUPT16HQ9Y5B9 1047 aaKnown RBP35.81■■■■□ 3.32
CPNE1-203ENST00000397442 AKAP4Q5JQC9 854 aa35.81■■■■□ 3.32
CPNE1-203ENST00000397442 IFT57Q9NWB7 429 aa35.81■■■■□ 3.32
CPNE1-203ENST00000397442 IL17REQ8NFR9 667 aa35.8■■■■□ 3.32
CPNE1-203ENST00000397442 CFAP44Q96MT7 982 aa35.78■■■■□ 3.32
CPNE1-203ENST00000397442 GNAI1P63096 354 aa35.78■■■■□ 3.32
CPNE1-203ENST00000397442 RCAN3Q9UKA8 241 aa35.78■■■■□ 3.32
CPNE1-203ENST00000397442 SPG7Q9UQ90 795 aa35.78■■■■□ 3.32
CPNE1-203ENST00000397442 IL2RBP14784 551 aa35.77■■■■□ 3.32
CPNE1-203ENST00000397442 USP35Q9P2H5 1018 aa35.77■■■■□ 3.32
CPNE1-203ENST00000397442 CEMIPQ8WUJ3 1361 aa35.76■■■■□ 3.32
CPNE1-203ENST00000397442 C8orf37Q96NL8 207 aa35.75■■■■□ 3.31
CPNE1-203ENST00000397442 LAS1LQ9Y4W2 734 aaKnown RBP35.75■■■■□ 3.31
CPNE1-203ENST00000397442 C1orf141Q5JVX7 400 aa35.75■■■■□ 3.31
CPNE1-203ENST00000397442 ADAMTS7Q9UKP4 1686 aa35.74■■■■□ 3.31
CPNE1-203ENST00000397442 VIRMAQ69YN4 1812 aaKnown RBP35.74■■■■□ 3.31
CPNE1-203ENST00000397442 DISP2A7MBM2 1401 aa35.74■■■■□ 3.31
CPNE1-203ENST00000397442 BCL9LQ86UU0 1499 aa35.74■■■■□ 3.31
CPNE1-203ENST00000397442 NGLY1Q96IV0 654 aa35.73■■■■□ 3.31
CPNE1-203ENST00000397442 MBIPQ9NS73 344 aa35.73■■■■□ 3.31
CPNE1-203ENST00000397442 FNBP4Q8N3X1 1017 aaPredicted RBP35.72■■■■□ 3.31
CPNE1-203ENST00000397442 LGR6Q9HBX8 967 aa35.72■■■■□ 3.31
CPNE1-203ENST00000397442 CHL1O00533 1208 aa35.72■■■■□ 3.31
CPNE1-203ENST00000397442 SHANK3Q9BYB0 1731 aa35.72■■■■□ 3.31
CPNE1-203ENST00000397442 WNK3Q9BYP7 1800 aa35.71■■■■□ 3.31
CPNE1-203ENST00000397442 SPATA31A1Q5TZJ5 1347 aa35.71■■■■□ 3.31
CPNE1-203ENST00000397442 RNF123Q5XPI4 1314 aa35.71■■■■□ 3.31
CPNE1-203ENST00000397442 CYP27B1O15528 508 aa35.71■■■■□ 3.31
CPNE1-203ENST00000397442 PHKG2P15735 406 aa35.71■■■■□ 3.31
CPNE1-203ENST00000397442 MPRIPQ6WCQ1 1025 aa35.7■■■■□ 3.31
CPNE1-203ENST00000397442 EXOSC9Q06265 439 aaKnown RBP35.69■■■■□ 3.3
CPNE1-203ENST00000397442 UNC5CLQ8IV45 518 aa35.69■■■■□ 3.3
CPNE1-203ENST00000397442 ZCRB1Q8TBF4 217 aaKnown RBP35.69■■■■□ 3.3
CPNE1-203ENST00000397442 SPATA31A5Q5VU36 1347 aa35.68■■■■□ 3.3
CPNE1-203ENST00000397442 SPATA31A7Q8IWB4 1347 aa35.68■■■■□ 3.3
CPNE1-203ENST00000397442 IFNL2Q8IZJ0 200 aa35.68■■■■□ 3.3
CPNE1-203ENST00000397442 RNMTO43148 476 aaKnown RBP35.67■■■■□ 3.3
CPNE1-203ENST00000397442 SCN11AQ9UI33 1791 aa35.66■■■■□ 3.3
CPNE1-203ENST00000397442 KDM6AO15550 1401 aaPredicted RBP35.65■■■■□ 3.3
CPNE1-203ENST00000397442 TNKS1BP1Q9C0C2 1729 aaKnown RBP35.65■■■■□ 3.3
CPNE1-203ENST00000397442 PCDH11XQ9BZA7 1347 aa35.64■■■■□ 3.3
CPNE1-203ENST00000397442 PCDH11YQ9BZA8 1340 aa35.64■■■■□ 3.3
CPNE1-203ENST00000397442 THRAP3Q9Y2W1 955 aaKnown RBP35.63■■■■□ 3.29
CPNE1-203ENST00000397442 MIS18AQ9NYP9 233 aa35.62■■■■□ 3.29
CPNE1-203ENST00000397442 GTF3C3Q9Y5Q9 886 aa35.62■■■■□ 3.29
CPNE1-203ENST00000397442 CT47B1P0C2W7 299 aaPredicted RBP35.62■■■■□ 3.29
CPNE1-203ENST00000397442 TAF7Q15545 349 aaPredicted RBP35.62■■■■□ 3.29
CPNE1-203ENST00000397442 MEX3CQ5U5Q3 659 aaKnown RBP35.61■■■■□ 3.29
CPNE1-203ENST00000397442 SIPA1L3O60292 1781 aaPredicted RBP35.61■■■■□ 3.29
CPNE1-203ENST00000397442 VPS72Q15906 364 aa35.6■■■■□ 3.29
CPNE1-203ENST00000397442 BABAM1Q9NWV8 329 aa35.59■■■■□ 3.29
CPNE1-203ENST00000397442 TSPYL4Q9UJ04 414 aa35.59■■■■□ 3.29
CPNE1-203ENST00000397442 USP21Q9UK80 565 aa35.59■■■■□ 3.29
CPNE1-203ENST00000397442 DCAF5Q96JK2 942 aa35.58■■■■□ 3.29
CPNE1-203ENST00000397442 HSP90AB1P08238 724 aaKnown RBP35.56■■■■□ 3.28
CPNE1-203ENST00000397442 TEFQ10587 303 aa35.56■■■■□ 3.28
CPNE1-203ENST00000397442 BARGINQ6ZT62 677 aa35.56■■■■□ 3.28
CPNE1-203ENST00000397442 TSPYL6Q8N831 410 aa35.56■■■■□ 3.28
CPNE1-203ENST00000397442 CDCA7Q9BWT1 371 aaPredicted RBP35.56■■■■□ 3.28
CPNE1-203ENST00000397442 RARSP54136 660 aaKnown RBP35.56■■■■□ 3.28
CPNE1-203ENST00000397442 RRP1P56182 461 aaKnown RBP35.56■■■■□ 3.28
CPNE1-203ENST00000397442 NKX1-1Q15270 411 aaPredicted RBP35.56■■■■□ 3.28
CPNE1-203ENST00000397442 C8orf58Q8NAV2 365 aa35.56■■■■□ 3.28
CPNE1-203ENST00000397442 CCDC9Q9Y3X0 531 aaKnown RBP35.56■■■■□ 3.28
CPNE1-203ENST00000397442 KDM3BQ7LBC6 1761 aa35.55■■■■□ 3.28
CPNE1-203ENST00000397442 MRC1P22897 1456 aa35.54■■■■□ 3.28
CPNE1-203ENST00000397442 DDX54Q8TDD1 881 aaKnown RBP35.53■■■■□ 3.28
CPNE1-203ENST00000397442 AFF2P51816 1311 aa35.53■■■■□ 3.28
CPNE1-203ENST00000397442 BCAR3O75815 825 aa35.52■■■■□ 3.28
CPNE1-203ENST00000397442 TNS2Q63HR2 1409 aa35.52■■■■□ 3.28
CPNE1-203ENST00000397442 VAMP4O75379 141 aa35.52■■■■□ 3.28
CPNE1-203ENST00000397442 KRT24Q2M2I5 525 aa35.52■■■■□ 3.28
CPNE1-203ENST00000397442 SLC52A2Q9HAB3 445 aa35.5■■■■□ 3.27
CPNE1-203ENST00000397442 EXOC5O00471 708 aa35.49■■■■□ 3.27
CPNE1-203ENST00000397442 ELL2O00472 640 aaPredicted RBP35.49■■■■□ 3.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms