RNA–Protein interactions for RNA: ENST00000396521.3

EXOSC3-202, Transcript of exosome component 3, humanhuman

TSL 2 BASIC

Gene EXOSC3, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-202ENST00000396521 RTL1A6NKG5 1358 aa24.58■■□□□ 1.53
EXOSC3-202ENST00000396521 KAT6BQ8WYB5 2073 aa24.57■■□□□ 1.52
EXOSC3-202ENST00000396521 PNPLA7Q6ZV29 1317 aa24.57■■□□□ 1.52
EXOSC3-202ENST00000396521 RAPGEF4Q8WZA2 1011 aa24.54■■□□□ 1.52
EXOSC3-202ENST00000396521 CCNL1Q9UK58 526 aaPredicted RBP24.53■■□□□ 1.52
EXOSC3-202ENST00000396521 USP47Q96K76 1375 aa24.53■■□□□ 1.52
EXOSC3-202ENST00000396521 SMG6Q86US8 1419 aaKnown RBP24.52■■□□□ 1.52
EXOSC3-202ENST00000396521 TMF1P82094 1093 aa24.52■■□□□ 1.52
EXOSC3-202ENST00000396521 CDCA8Q53HL2 280 aa24.52■■□□□ 1.52
EXOSC3-202ENST00000396521 KIF24Q5T7B8 1368 aa24.51■■□□□ 1.51
EXOSC3-202ENST00000396521 QSER1Q2KHR3 1735 aa24.5■■□□□ 1.51
EXOSC3-202ENST00000396521 FYB1O15117 783 aa24.5■■□□□ 1.51
EXOSC3-202ENST00000396521 GRIN3BO60391 1043 aa24.5■■□□□ 1.51
EXOSC3-202ENST00000396521 C1QTNF8P60827 252 aa24.5■■□□□ 1.51
EXOSC3-202ENST00000396521 NBPF6Q5VWK0 638 aa24.5■■□□□ 1.51
EXOSC3-202ENST00000396521 FLAD1Q8NFF5 587 aa24.5■■□□□ 1.51
EXOSC3-202ENST00000396521 NBPF4Q96M43 638 aa24.5■■□□□ 1.51
EXOSC3-202ENST00000396521 NSD2O96028 1365 aa24.5■■□□□ 1.51
EXOSC3-202ENST00000396521 CHD4Q14839 1912 aa24.49■■□□□ 1.51
EXOSC3-202ENST00000396521 KLHL34Q8N239 644 aa24.49■■□□□ 1.51
EXOSC3-202ENST00000396521 TATP17735 454 aaPredicted RBP24.48■■□□□ 1.51
EXOSC3-202ENST00000396521 MEGF6O75095 1541 aa24.47■■□□□ 1.51
EXOSC3-202ENST00000396521 FBLN1P23142 703 aa24.47■■□□□ 1.51
EXOSC3-202ENST00000396521 RRS1Q15050 365 aaKnown RBP24.47■■□□□ 1.51
EXOSC3-202ENST00000396521 INSRP06213 1382 aa24.46■■□□□ 1.51
EXOSC3-202ENST00000396521 PCDH11XQ9BZA7 1347 aa24.46■■□□□ 1.51
EXOSC3-202ENST00000396521 PCDH11YQ9BZA8 1340 aa24.46■■□□□ 1.51
EXOSC3-202ENST00000396521 KCNQ4P56696 695 aa24.46■■□□□ 1.51
EXOSC3-202ENST00000396521 GGNBP2Q9H3C7 697 aa24.45■■□□□ 1.5
EXOSC3-202ENST00000396521 MSH5O43196 834 aa24.44■■□□□ 1.5
EXOSC3-202ENST00000396521 COL24A1Q17RW2 1714 aa24.44■■□□□ 1.5
EXOSC3-202ENST00000396521 COL23A1Q86Y22 540 aaPredicted RBP24.43■■□□□ 1.5
EXOSC3-202ENST00000396521 PELP1Q8IZL8 1130 aaKnown RBP24.43■■□□□ 1.5
EXOSC3-202ENST00000396521 FLT4P35916 1363 aa24.42■■□□□ 1.5
EXOSC3-202ENST00000396521 LY75O60449 1722 aa24.42■■□□□ 1.5
EXOSC3-202ENST00000396521 SENP3-EIF4A1A0A087X0R7 540 aa24.42■■□□□ 1.5
EXOSC3-202ENST00000396521 SMARCC1Q92922 1105 aaPredicted RBP24.42■■□□□ 1.5
EXOSC3-202ENST00000396521 GIGYF1O75420 1035 aaPredicted RBP24.41■■□□□ 1.5
EXOSC3-202ENST00000396521 CD2APQ9Y5K6 639 aa24.41■■□□□ 1.5
EXOSC3-202ENST00000396521 HSP90AB2PQ58FF8 381 aa24.4■■□□□ 1.5
EXOSC3-202ENST00000396521 NLGN2Q8NFZ4 835 aa24.4■■□□□ 1.5
EXOSC3-202ENST00000396521 DOT1LQ8TEK3 1739 aa24.4■■□□□ 1.5
EXOSC3-202ENST00000396521 GOLGB1Q14789 3259 aaKnown RBP24.4■■□□□ 1.5
EXOSC3-202ENST00000396521 USHBP1Q8N6Y0 703 aa24.39■■□□□ 1.49
EXOSC3-202ENST00000396521 PALLDQ8WX93 1383 aa24.37■■□□□ 1.49
EXOSC3-202ENST00000396521 MPRIPQ6WCQ1 1025 aa24.36■■□□□ 1.49
EXOSC3-202ENST00000396521 SHANK3Q9BYB0 1731 aa24.35■■□□□ 1.49
EXOSC3-202ENST00000396521 NSD3Q9BZ95 1437 aa24.35■■□□□ 1.49
EXOSC3-202ENST00000396521 CYP27B1O15528 508 aa24.34■■□□□ 1.49
EXOSC3-202ENST00000396521 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.34■■□□□ 1.49
EXOSC3-202ENST00000396521 SPG7Q9UQ90 795 aa24.34■■□□□ 1.49
EXOSC3-202ENST00000396521 YBX3P16989 372 aaKnown RBP eCLIP24.33■■□□□ 1.49
EXOSC3-202ENST00000396521 NKX1-1Q15270 411 aaPredicted RBP24.33■■□□□ 1.49
EXOSC3-202ENST00000396521 AK7Q96M32 723 aa24.32■■□□□ 1.48
EXOSC3-202ENST00000396521 MSL1Q68DK7 614 aa24.31■■□□□ 1.48
EXOSC3-202ENST00000396521 RGPD2P0DJD1 1756 aa24.31■■□□□ 1.48
EXOSC3-202ENST00000396521 TUBGCP6Q96RT7 1819 aa24.3■■□□□ 1.48
EXOSC3-202ENST00000396521 TIMELESSQ9UNS1 1208 aa24.29■■□□□ 1.48
EXOSC3-202ENST00000396521 WASHC2AQ641Q2 1341 aa24.29■■□□□ 1.48
EXOSC3-202ENST00000396521 SSFA2P28290 1259 aa24.28■■□□□ 1.48
EXOSC3-202ENST00000396521 CARD14Q9BXL6 1004 aa24.28■■□□□ 1.48
EXOSC3-202ENST00000396521 NCAPD2Q15021 1401 aa24.27■■□□□ 1.48
EXOSC3-202ENST00000396521 PIGBQ92521 554 aa24.27■■□□□ 1.48
EXOSC3-202ENST00000396521 EMILIN1Q9Y6C2 1016 aa24.27■■□□□ 1.48
EXOSC3-202ENST00000396521 PLEKHG2Q9H7P9 1386 aa24.26■■□□□ 1.47
EXOSC3-202ENST00000396521 C5P01031 1676 aa24.25■■□□□ 1.47
EXOSC3-202ENST00000396521 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.24■■□□□ 1.47
EXOSC3-202ENST00000396521 LOC102724428A0A0B4J2F2 783 aa24.24■■□□□ 1.47
EXOSC3-202ENST00000396521 PPM1GO15355 546 aaPredicted RBP24.24■■□□□ 1.47
EXOSC3-202ENST00000396521 SIK1P57059 783 aa24.24■■□□□ 1.47
EXOSC3-202ENST00000396521 TMOD3Q9NYL9 352 aa24.24■■□□□ 1.47
EXOSC3-202ENST00000396521 IFNL2Q8IZJ0 200 aa24.23■■□□□ 1.47
EXOSC3-202ENST00000396521 EYA1Q99502 592 aa24.21■■□□□ 1.47
EXOSC3-202ENST00000396521 GPBP1L1Q9HC44 474 aaPredicted RBP24.21■■□□□ 1.47
EXOSC3-202ENST00000396521 KIF20BQ96Q89 1820 aa24.2■■□□□ 1.46
EXOSC3-202ENST00000396521 ATP10DQ9P241 1426 aa24.19■■□□□ 1.46
EXOSC3-202ENST00000396521 C4BP0C0L5 1744 aa24.19■■□□□ 1.46
EXOSC3-202ENST00000396521 PHF14O94880 888 aa24.19■■□□□ 1.46
EXOSC3-202ENST00000396521 PHKG2P15735 406 aa24.18■■□□□ 1.46
EXOSC3-202ENST00000396521 TRIM26Q12899 539 aaPredicted RBP24.18■■□□□ 1.46
EXOSC3-202ENST00000396521 POLKQ9UBT6 870 aa24.18■■□□□ 1.46
EXOSC3-202ENST00000396521 PKD1L3Q7Z443 1732 aa24.18■■□□□ 1.46
EXOSC3-202ENST00000396521 IGSF1Q8N6C5 1336 aa24.17■■□□□ 1.46
EXOSC3-202ENST00000396521 ATP6V1AP38606 617 aa24.17■■□□□ 1.46
EXOSC3-202ENST00000396521 HSP90AB1P08238 724 aaKnown RBP24.16■■□□□ 1.46
EXOSC3-202ENST00000396521 LINC00116Q8NCU8 138 aa24.16■■□□□ 1.46
EXOSC3-202ENST00000396521 TAF1LQ8IZX4 1826 aa24.16■■□□□ 1.46
EXOSC3-202ENST00000396521 GNPATO15228 680 aa24.15■■□□□ 1.46
EXOSC3-202ENST00000396521 AMIGO3Q86WK7 504 aa24.15■■□□□ 1.46
EXOSC3-202ENST00000396521 ASAP1Q9ULH1 1129 aa24.15■■□□□ 1.46
EXOSC3-202ENST00000396521 ADCY9O60503 1353 aa24.15■■□□□ 1.46
EXOSC3-202ENST00000396521 CEP350Q5VT06 3117 aa24.14■■□□□ 1.46
EXOSC3-202ENST00000396521 ERVV-2B6SEH9 535 aa24.14■■□□□ 1.45
EXOSC3-202ENST00000396521 NLGN1Q8N2Q7 840 aa24.13■■□□□ 1.45
EXOSC3-202ENST00000396521 ADRA2BP18089 450 aa24.12■■□□□ 1.45
EXOSC3-202ENST00000396521 ITPK1Q13572 414 aa24.12■■□□□ 1.45
EXOSC3-202ENST00000396521 ATG3Q9NT62 314 aa24.12■■□□□ 1.45
EXOSC3-202ENST00000396521 RTCBQ9Y3I0 505 aaKnown RBP24.12■■□□□ 1.45
EXOSC3-202ENST00000396521 TOGARAM1Q9Y4F4 1720 aa24.12■■□□□ 1.45
EXOSC3-202ENST00000396521 ITGB4P16144 1822 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms