RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 CHL1O00533 1208 aa19.01■□□□□ 0.63
CBX3-202ENST00000396386 MTHFSDQ2M296 383 aaKnown RBP19.01■□□□□ 0.63
CBX3-202ENST00000396386 PROSER2Q86WR7 435 aaPredicted RBP19.01■□□□□ 0.63
CBX3-202ENST00000396386 ELL2O00472 640 aaPredicted RBP19.01■□□□□ 0.63
CBX3-202ENST00000396386 NPM2Q86SE8 214 aaKnown RBP19.01■□□□□ 0.63
CBX3-202ENST00000396386 RTF1Q92541 710 aaKnown RBP19.01■□□□□ 0.63
CBX3-202ENST00000396386 C8orf34Q49A92 452 aa19■□□□□ 0.63
CBX3-202ENST00000396386 KCNH5Q8NCM2 988 aa19■□□□□ 0.63
CBX3-202ENST00000396386 C1orf167Q5SNV9 1468 aa19■□□□□ 0.63
CBX3-202ENST00000396386 ABCC4O15439 1325 aa18.99■□□□□ 0.63
CBX3-202ENST00000396386 RGPD2P0DJD1 1756 aa18.99■□□□□ 0.63
CBX3-202ENST00000396386 ALS2Q96Q42 1657 aa18.99■□□□□ 0.63
CBX3-202ENST00000396386 HDAC1Q13547 482 aaPredicted RBP18.99■□□□□ 0.63
CBX3-202ENST00000396386 CHMP4BQ9H444 224 aaKnown RBP18.99■□□□□ 0.63
CBX3-202ENST00000396386 ZBTB40Q9NUA8 1239 aa18.99■□□□□ 0.63
CBX3-202ENST00000396386 NOP58Q9Y2X3 529 aaKnown RBP18.99■□□□□ 0.63
CBX3-202ENST00000396386 ORAI2Q96SN7 254 aa18.98■□□□□ 0.63
CBX3-202ENST00000396386 FOXO3O43524 673 aa18.97■□□□□ 0.63
CBX3-202ENST00000396386 HTATSF1O43719 755 aaKnown RBP18.97■□□□□ 0.63
CBX3-202ENST00000396386 IP6K1Q92551 441 aa18.97■□□□□ 0.63
CBX3-202ENST00000396386 API5Q9BZZ5 524 aaKnown RBP18.97■□□□□ 0.63
CBX3-202ENST00000396386 PDZRN3Q9UPQ7 1066 aa18.97■□□□□ 0.63
CBX3-202ENST00000396386 DCCP43146 1447 aa18.97■□□□□ 0.63
CBX3-202ENST00000396386 FAM208AQ9UK61 1670 aaKnown RBP18.97■□□□□ 0.63
CBX3-202ENST00000396386 LTV1Q96GA3 475 aaPredicted RBP18.97■□□□□ 0.63
CBX3-202ENST00000396386 MAP3K5Q99683 1374 aa18.96■□□□□ 0.63
CBX3-202ENST00000396386 CAMTA1Q9Y6Y1 1673 aa18.96■□□□□ 0.63
CBX3-202ENST00000396386 NCOA3Q9Y6Q9 1424 aa18.95■□□□□ 0.62
CBX3-202ENST00000396386 C19orf44Q9H6X5 657 aa18.94■□□□□ 0.62
CBX3-202ENST00000396386 LMO7Q8WWI1 1683 aa18.94■□□□□ 0.62
CBX3-202ENST00000396386 MSH6P52701 1360 aa18.94■□□□□ 0.62
CBX3-202ENST00000396386 MST1RQ04912 1400 aa18.94■□□□□ 0.62
CBX3-202ENST00000396386 CERKQ8TCT0 537 aa18.94■□□□□ 0.62
CBX3-202ENST00000396386 USP19O94966 1318 aa18.94■□□□□ 0.62
CBX3-202ENST00000396386 GNAT3A8MTJ3 354 aa18.93■□□□□ 0.62
CBX3-202ENST00000396386 TSPYL4Q9UJ04 414 aa18.93■□□□□ 0.62
CBX3-202ENST00000396386 KRT24Q2M2I5 525 aa18.92■□□□□ 0.62
CBX3-202ENST00000396386 XPCQ01831 940 aaPredicted RBP18.92■□□□□ 0.62
CBX3-202ENST00000396386 ZBTB47Q9UFB7 747 aaPredicted RBP18.92■□□□□ 0.62
CBX3-202ENST00000396386 TMEM94Q12767 1356 aa18.92■□□□□ 0.62
CBX3-202ENST00000396386 RGS12O14924 1447 aa18.91■□□□□ 0.62
CBX3-202ENST00000396386 MED1Q15648 1581 aaPredicted RBP18.91■□□□□ 0.62
CBX3-202ENST00000396386 SMC5Q8IY18 1101 aa18.9■□□□□ 0.62
CBX3-202ENST00000396386 NCAPD2Q15021 1401 aa18.9■□□□□ 0.62
CBX3-202ENST00000396386 ZBTB7CA1YPR0 619 aa18.9■□□□□ 0.62
CBX3-202ENST00000396386 ZBTB7BO15156 539 aaPredicted RBP18.9■□□□□ 0.62
CBX3-202ENST00000396386 KRT28Q7Z3Y7 464 aa18.9■□□□□ 0.62
CBX3-202ENST00000396386 USHBP1Q8N6Y0 703 aa18.9■□□□□ 0.62
CBX3-202ENST00000396386 DDRGK1Q96HY6 314 aa18.9■□□□□ 0.62
CBX3-202ENST00000396386 PTPRCP08575 1304 aa18.89■□□□□ 0.61
CBX3-202ENST00000396386 XIRP1Q702N8 1843 aaKnown RBP18.89■□□□□ 0.61
CBX3-202ENST00000396386 RGPD5Q99666 1765 aa18.89■□□□□ 0.61
CBX3-202ENST00000396386 GCP02774 474 aa18.88■□□□□ 0.61
CBX3-202ENST00000396386 ATF3P18847 181 aa18.88■□□□□ 0.61
CBX3-202ENST00000396386 KDM3BQ7LBC6 1761 aa18.88■□□□□ 0.61
CBX3-202ENST00000396386 N4BP2Q86UW6 1770 aaPredicted RBP18.88■□□□□ 0.61
CBX3-202ENST00000396386 ARHGEF25Q86VW2 580 aa18.88■□□□□ 0.61
CBX3-202ENST00000396386 MIS18AQ9NYP9 233 aa18.88■□□□□ 0.61
CBX3-202ENST00000396386 CACNA1FO60840 1977 aa18.88■□□□□ 0.61
CBX3-202ENST00000396386 LMOD2Q6P5Q4 547 aa18.87■□□□□ 0.61
CBX3-202ENST00000396386 NBPF6Q5VWK0 638 aa18.86■□□□□ 0.61
CBX3-202ENST00000396386 NBPF4Q96M43 638 aa18.86■□□□□ 0.61
CBX3-202ENST00000396386 BABAM1Q9NWV8 329 aa18.86■□□□□ 0.61
CBX3-202ENST00000396386 CRYBG1Q9Y4K1 1723 aa18.85■□□□□ 0.61
CBX3-202ENST00000396386 SOS1Q07889 1333 aaPredicted RBP18.85■□□□□ 0.61
CBX3-202ENST00000396386 LTBP4Q8N2S1 1624 aa18.85■□□□□ 0.61
CBX3-202ENST00000396386 INTS3Q68E01 1043 aaKnown RBP18.85■□□□□ 0.61
CBX3-202ENST00000396386 IL17REQ8NFR9 667 aa18.84■□□□□ 0.61
CBX3-202ENST00000396386 C1orf115Q9H7X2 142 aa18.84■□□□□ 0.61
CBX3-202ENST00000396386 CEMIPQ8WUJ3 1361 aa18.83■□□□□ 0.61
CBX3-202ENST00000396386 ABCC6O95255 1503 aa18.82■□□□□ 0.6
CBX3-202ENST00000396386 MYT1Q01538 1121 aa18.82■□□□□ 0.6
CBX3-202ENST00000396386 NUCB1Q02818 461 aa18.82■□□□□ 0.6
CBX3-202ENST00000396386 TAF7Q15545 349 aaPredicted RBP18.82■□□□□ 0.6
CBX3-202ENST00000396386 GCC1Q96CN9 775 aa18.82■□□□□ 0.6
CBX3-202ENST00000396386 SLC4A2P04920 1241 aa18.82■□□□□ 0.6
CBX3-202ENST00000396386 CADPS2Q86UW7 1296 aa18.82■□□□□ 0.6
CBX3-202ENST00000396386 ANKRD24Q8TF21 1146 aa18.82■□□□□ 0.6
CBX3-202ENST00000396386 LRRC59Q96AG4 307 aaKnown RBP18.82■□□□□ 0.6
CBX3-202ENST00000396386 OVOS2A0A0G2JMS6 1433 aa18.81■□□□□ 0.6
CBX3-202ENST00000396386 TNS3Q68CZ2 1445 aa18.81■□□□□ 0.6
CBX3-202ENST00000396386 PLEKHG5O94827 1062 aa18.81■□□□□ 0.6
CBX3-202ENST00000396386 STK31Q9BXU1 1019 aa18.81■□□□□ 0.6
CBX3-202ENST00000396386 PXDNQ92626 1479 aa18.8■□□□□ 0.6
CBX3-202ENST00000396386 COL18A1P39060 1754 aa18.8■□□□□ 0.6
CBX3-202ENST00000396386 NPHP3Q7Z494 1330 aa18.8■□□□□ 0.6
CBX3-202ENST00000396386 ATP10DQ9P241 1426 aa18.79■□□□□ 0.6
CBX3-202ENST00000396386 SIPA1L3O60292 1781 aaPredicted RBP18.79■□□□□ 0.6
CBX3-202ENST00000396386 ADAMTS7Q9UKP4 1686 aa18.79■□□□□ 0.6
CBX3-202ENST00000396386 AMOTQ4VCS5 1084 aa18.79■□□□□ 0.6
CBX3-202ENST00000396386 PLEKHO1Q53GL0 409 aaPredicted RBP18.79■□□□□ 0.6
CBX3-202ENST00000396386 CCDC30Q5VVM6 783 aa18.79■□□□□ 0.6
CBX3-202ENST00000396386 ZNF530Q6P9A1 599 aaPredicted RBP18.79■□□□□ 0.6
CBX3-202ENST00000396386 CHD1LQ86WJ1 897 aa18.79■□□□□ 0.6
CBX3-202ENST00000396386 AKAP4Q5JQC9 854 aa18.78■□□□□ 0.6
CBX3-202ENST00000396386 PXDNLA1KZ92 1463 aa18.77■□□□□ 0.6
CBX3-202ENST00000396386 SIRT2Q8IXJ6 389 aa18.77■□□□□ 0.6
CBX3-202ENST00000396386 G2E3Q7L622 706 aa18.76■□□□□ 0.59
CBX3-202ENST00000396386 LNPKQ9C0E8 428 aa18.76■□□□□ 0.59
CBX3-202ENST00000396386 UPF2Q9HAU5 1272 aaKnown RBP18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms