RNA–Protein interactions for RNA: ENST00000396345.1

HOXA9-202, Transcript of homeobox A9, humanhuman

TSL 2 BASIC

Gene HOXA9, Length 797 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-202ENST00000396345 AEBP1Q8IUX7 1158 aa25.75■■□□□ 1.71
HOXA9-202ENST00000396345 NUDCQ9Y266 331 aa25.75■■□□□ 1.71
HOXA9-202ENST00000396345 ZCRB1Q8TBF4 217 aaKnown RBP25.74■■□□□ 1.71
HOXA9-202ENST00000396345 MARCH10Q8NA82 808 aaPredicted RBP25.73■■□□□ 1.71
HOXA9-202ENST00000396345 KDRP35968 1356 aa25.72■■□□□ 1.71
HOXA9-202ENST00000396345 HMOX1P09601 288 aa25.72■■□□□ 1.71
HOXA9-202ENST00000396345 FAM196AQ6ZSG2 479 aa25.7■■□□□ 1.7
HOXA9-202ENST00000396345 DDX54Q8TDD1 881 aaKnown RBP25.7■■□□□ 1.7
HOXA9-202ENST00000396345 SPG7Q9UQ90 795 aa25.68■■□□□ 1.7
HOXA9-202ENST00000396345 PLEKHG2Q9H7P9 1386 aa25.68■■□□□ 1.7
HOXA9-202ENST00000396345 U2AF1L5P0DN76 240 aaPredicted RBP25.67■■□□□ 1.7
HOXA9-202ENST00000396345 U2AF1Q01081 240 aaKnown RBP eCLIP25.67■■□□□ 1.7
HOXA9-202ENST00000396345 PKD1L3Q7Z443 1732 aa25.67■■□□□ 1.7
HOXA9-202ENST00000396345 SHANK3Q9BYB0 1731 aa25.67■■□□□ 1.7
HOXA9-202ENST00000396345 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.67■■□□□ 1.7
HOXA9-202ENST00000396345 PCDH11XQ9BZA7 1347 aa25.65■■□□□ 1.7
HOXA9-202ENST00000396345 PCDH11YQ9BZA8 1340 aa25.65■■□□□ 1.7
HOXA9-202ENST00000396345 PLEKHO1Q53GL0 409 aaPredicted RBP25.65■■□□□ 1.7
HOXA9-202ENST00000396345 AMOTQ4VCS5 1084 aa25.63■■□□□ 1.69
HOXA9-202ENST00000396345 EP400Q96L91 3159 aa25.63■■□□□ 1.69
HOXA9-202ENST00000396345 BCL9O00512 1426 aa25.62■■□□□ 1.69
HOXA9-202ENST00000396345 CYP27B1O15528 508 aa25.61■■□□□ 1.69
HOXA9-202ENST00000396345 RSPH6AQ9H0K4 717 aa25.61■■□□□ 1.69
HOXA9-202ENST00000396345 FCHSD2O94868 740 aa25.6■■□□□ 1.69
HOXA9-202ENST00000396345 PRKAR2BP31323 418 aa25.59■■□□□ 1.69
HOXA9-202ENST00000396345 ZNF530Q6P9A1 599 aaPredicted RBP25.59■■□□□ 1.69
HOXA9-202ENST00000396345 TRIM37O94972 964 aa25.58■■□□□ 1.69
HOXA9-202ENST00000396345 IFNL2Q8IZJ0 200 aa25.58■■□□□ 1.69
HOXA9-202ENST00000396345 SBF2Q86WG5 1849 aa25.58■■□□□ 1.68
HOXA9-202ENST00000396345 PHKG2P15735 406 aa25.57■■□□□ 1.68
HOXA9-202ENST00000396345 CCDC125Q86Z20 511 aa25.57■■□□□ 1.68
HOXA9-202ENST00000396345 KAT6BQ8WYB5 2073 aa25.56■■□□□ 1.68
HOXA9-202ENST00000396345 WDR43Q15061 677 aaKnown RBP eCLIP25.56■■□□□ 1.68
HOXA9-202ENST00000396345 DIEXFQ68CQ4 756 aaKnown RBP25.56■■□□□ 1.68
HOXA9-202ENST00000396345 ACSBG1Q96GR2 724 aa25.56■■□□□ 1.68
HOXA9-202ENST00000396345 SF3B2Q13435 895 aaKnown RBP25.55■■□□□ 1.68
HOXA9-202ENST00000396345 CCDC184Q52MB2 194 aa25.55■■□□□ 1.68
HOXA9-202ENST00000396345 NKX1-1Q15270 411 aaPredicted RBP25.54■■□□□ 1.68
HOXA9-202ENST00000396345 C1orf141Q5JVX7 400 aa25.54■■□□□ 1.68
HOXA9-202ENST00000396345 MTHFSDQ2M296 383 aaKnown RBP25.53■■□□□ 1.68
HOXA9-202ENST00000396345 PHACTR3Q96KR7 559 aa25.53■■□□□ 1.68
HOXA9-202ENST00000396345 BCL11BQ9C0K0 894 aaPredicted RBP25.53■■□□□ 1.68
HOXA9-202ENST00000396345 PNNQ9H307 717 aaKnown RBP25.53■■□□□ 1.68
HOXA9-202ENST00000396345 MRS2Q9HD23 443 aa25.53■■□□□ 1.68
HOXA9-202ENST00000396345 KCNQ2O43526 872 aa25.52■■□□□ 1.68
HOXA9-202ENST00000396345 HSP90AB1P08238 724 aaKnown RBP25.52■■□□□ 1.68
HOXA9-202ENST00000396345 DOT1LQ8TEK3 1739 aa25.51■■□□□ 1.68
HOXA9-202ENST00000396345 NEFMP07197 916 aa25.51■■□□□ 1.67
HOXA9-202ENST00000396345 GAS2L2Q8NHY3 880 aa25.51■■□□□ 1.67
HOXA9-202ENST00000396345 NHSQ6T4R5 1651 aa25.51■■□□□ 1.67
HOXA9-202ENST00000396345 TNS1Q9HBL0 1735 aaKnown RBP25.51■■□□□ 1.67
HOXA9-202ENST00000396345 AKAP4Q5JQC9 854 aa25.5■■□□□ 1.67
HOXA9-202ENST00000396345 PTF1AQ7RTS3 328 aa25.5■■□□□ 1.67
HOXA9-202ENST00000396345 PRIM1P49642 420 aaKnown RBP25.49■■□□□ 1.67
HOXA9-202ENST00000396345 SYTL4Q96C24 671 aaPredicted RBP25.49■■□□□ 1.67
HOXA9-202ENST00000396345 PLEKHF1Q96S99 279 aa25.49■■□□□ 1.67
HOXA9-202ENST00000396345 ADAMTS8Q9UP79 889 aa25.49■■□□□ 1.67
HOXA9-202ENST00000396345 APBA3O96018 575 aa25.48■■□□□ 1.67
HOXA9-202ENST00000396345 DCAF5Q96JK2 942 aa25.48■■□□□ 1.67
HOXA9-202ENST00000396345 TOGARAM1Q9Y4F4 1720 aa25.47■■□□□ 1.67
HOXA9-202ENST00000396345 MAPK8IP3Q9UPT6 1336 aa25.46■■□□□ 1.67
HOXA9-202ENST00000396345 BAG6P46379 1132 aa25.46■■□□□ 1.67
HOXA9-202ENST00000396345 MPRIPQ6WCQ1 1025 aa25.46■■□□□ 1.67
HOXA9-202ENST00000396345 KDM6AO15550 1401 aaPredicted RBP25.45■■□□□ 1.66
HOXA9-202ENST00000396345 DEFB132Q7Z7B7 95 aa25.44■■□□□ 1.66
HOXA9-202ENST00000396345 PNISRQ8TF01 805 aaKnown RBP25.44■■□□□ 1.66
HOXA9-202ENST00000396345 BTAF1O14981 1849 aa25.43■■□□□ 1.66
HOXA9-202ENST00000396345 ITGB4P16144 1822 aa25.43■■□□□ 1.66
HOXA9-202ENST00000396345 GNAT3A8MTJ3 354 aa25.43■■□□□ 1.66
HOXA9-202ENST00000396345 ERVV-2B6SEH9 535 aa25.43■■□□□ 1.66
HOXA9-202ENST00000396345 CCDC146Q8IYE0 955 aa25.43■■□□□ 1.66
HOXA9-202ENST00000396345 MAP3K5Q99683 1374 aa25.43■■□□□ 1.66
HOXA9-202ENST00000396345 RUNDC1Q96C34 613 aa25.42■■□□□ 1.66
HOXA9-202ENST00000396345 RNMTO43148 476 aaKnown RBP25.41■■□□□ 1.66
HOXA9-202ENST00000396345 EN1Q05925 392 aaPredicted RBP25.41■■□□□ 1.66
HOXA9-202ENST00000396345 LGR6Q9HBX8 967 aa25.41■■□□□ 1.66
HOXA9-202ENST00000396345 TMOD3Q9NYL9 352 aa25.41■■□□□ 1.66
HOXA9-202ENST00000396345 SCN11AQ9UI33 1791 aa25.41■■□□□ 1.66
HOXA9-202ENST00000396345 NFE2L2Q16236 605 aa25.4■■□□□ 1.66
HOXA9-202ENST00000396345 CABP4P57796 275 aa25.39■■□□□ 1.66
HOXA9-202ENST00000396345 PIGBQ92521 554 aa25.39■■□□□ 1.66
HOXA9-202ENST00000396345 VIRMAQ69YN4 1812 aaKnown RBP25.39■■□□□ 1.65
HOXA9-202ENST00000396345 CCER2I3L3R5 266 aa25.38■■□□□ 1.65
HOXA9-202ENST00000396345 PLSCR1O15162 318 aa25.38■■□□□ 1.65
HOXA9-202ENST00000396345 CAMKK2Q96RR4 588 aa25.37■■□□□ 1.65
HOXA9-202ENST00000396345 ADAMTS7Q9UKP4 1686 aa25.36■■□□□ 1.65
HOXA9-202ENST00000396345 EZH2Q15910 746 aaKnown RBP25.36■■□□□ 1.65
HOXA9-202ENST00000396345 MIER1Q8N108 512 aa25.36■■□□□ 1.65
HOXA9-202ENST00000396345 RTF1Q92541 710 aaKnown RBP25.36■■□□□ 1.65
HOXA9-202ENST00000396345 DLG5Q8TDM6 1919 aa25.35■■□□□ 1.65
HOXA9-202ENST00000396345 HTATSF1O43719 755 aaKnown RBP25.35■■□□□ 1.65
HOXA9-202ENST00000396345 NFATC2IPQ8NCF5 419 aa25.35■■□□□ 1.65
HOXA9-202ENST00000396345 IL17REQ8NFR9 667 aa25.35■■□□□ 1.65
HOXA9-202ENST00000396345 RGPD3A6NKT7 1758 aaPredicted RBP25.34■■□□□ 1.65
HOXA9-202ENST00000396345 RGPD4Q7Z3J3 1758 aa25.34■■□□□ 1.65
HOXA9-202ENST00000396345 TMPOP42166 694 aaKnown RBP25.34■■□□□ 1.65
HOXA9-202ENST00000396345 SLC52A2Q9HAB3 445 aa25.34■■□□□ 1.65
HOXA9-202ENST00000396345 RIPK4P57078 832 aa25.33■■□□□ 1.65
HOXA9-202ENST00000396345 FAM9BQ8IZU0 186 aa25.33■■□□□ 1.65
HOXA9-202ENST00000396345 MCM10Q7L590 875 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms