RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 SOX12O15370 315 aa29.35■■■□□ 2.29
VPS16-201ENST00000380443 C8orf34Q49A92 452 aa29.35■■■□□ 2.29
VPS16-201ENST00000380443 FAM83GA6ND36 823 aa29.34■■■□□ 2.29
VPS16-201ENST00000380443 ZBTB40Q9NUA8 1239 aa29.34■■■□□ 2.29
VPS16-201ENST00000380443 ZBTB47Q9UFB7 747 aaPredicted RBP29.34■■■□□ 2.29
VPS16-201ENST00000380443 HOXC9P31274 260 aa29.34■■■□□ 2.29
VPS16-201ENST00000380443 TSPYL6Q8N831 410 aa29.33■■■□□ 2.29
VPS16-201ENST00000380443 DDRGK1Q96HY6 314 aa29.33■■■□□ 2.29
VPS16-201ENST00000380443 API5Q9BZZ5 524 aaKnown RBP29.33■■■□□ 2.29
VPS16-201ENST00000380443 SLAIN2Q9P270 581 aa29.33■■■□□ 2.29
VPS16-201ENST00000380443 EYA1Q99502 592 aa29.32■■■□□ 2.28
VPS16-201ENST00000380443 PAK3O75914 559 aaPredicted RBP29.31■■■□□ 2.28
VPS16-201ENST00000380443 C8orf58Q8NAV2 365 aa29.31■■■□□ 2.28
VPS16-201ENST00000380443 RTF1Q92541 710 aaKnown RBP29.31■■■□□ 2.28
VPS16-201ENST00000380443 KCNH5Q8NCM2 988 aa29.3■■■□□ 2.28
VPS16-201ENST00000380443 DCTN1Q14203 1278 aa29.29■■■□□ 2.28
VPS16-201ENST00000380443 CRB1P82279 1406 aa29.29■■■□□ 2.28
VPS16-201ENST00000380443 PSME1Q06323 249 aa29.29■■■□□ 2.28
VPS16-201ENST00000380443 PDZRN3Q9UPQ7 1066 aa29.29■■■□□ 2.28
VPS16-201ENST00000380443 ABCC4O15439 1325 aa29.28■■■□□ 2.28
VPS16-201ENST00000380443 MTHFSDQ2M296 383 aaKnown RBP29.27■■■□□ 2.28
VPS16-201ENST00000380443 ESCO1Q5FWF5 840 aa29.27■■■□□ 2.28
VPS16-201ENST00000380443 NPM2Q86SE8 214 aaKnown RBP29.27■■■□□ 2.28
VPS16-201ENST00000380443 VIRMAQ69YN4 1812 aaKnown RBP29.25■■■□□ 2.27
VPS16-201ENST00000380443 MCM10Q7L590 875 aa29.24■■■□□ 2.27
VPS16-201ENST00000380443 SMC5Q8IY18 1101 aa29.24■■■□□ 2.27
VPS16-201ENST00000380443 IP6K1Q92551 441 aa29.24■■■□□ 2.27
VPS16-201ENST00000380443 MST1RQ04912 1400 aa29.24■■■□□ 2.27
VPS16-201ENST00000380443 PHRF1Q9P1Y6 1649 aaKnown RBP29.23■■■□□ 2.27
VPS16-201ENST00000380443 NFAT5O94916 1531 aa29.23■■■□□ 2.27
VPS16-201ENST00000380443 ELL2O00472 640 aaPredicted RBP29.22■■■□□ 2.27
VPS16-201ENST00000380443 ZBTB7BO15156 539 aaPredicted RBP29.22■■■□□ 2.27
VPS16-201ENST00000380443 BABAM1Q9NWV8 329 aa29.22■■■□□ 2.27
VPS16-201ENST00000380443 ROBO1Q9Y6N7 1651 aa29.21■■■□□ 2.27
VPS16-201ENST00000380443 NUTM2GQ5VZR2 741 aa29.21■■■□□ 2.27
VPS16-201ENST00000380443 SOS1Q07889 1333 aaPredicted RBP29.2■■■□□ 2.27
VPS16-201ENST00000380443 LTN1O94822 1766 aa29.19■■■□□ 2.26
VPS16-201ENST00000380443 KIF1AQ12756 1690 aa29.18■■■□□ 2.26
VPS16-201ENST00000380443 PTPRCP08575 1304 aa29.18■■■□□ 2.26
VPS16-201ENST00000380443 GNAT3A8MTJ3 354 aa29.18■■■□□ 2.26
VPS16-201ENST00000380443 C1orf167Q5SNV9 1468 aa29.17■■■□□ 2.26
VPS16-201ENST00000380443 LRRC37A3O60309 1634 aa29.16■■■□□ 2.26
VPS16-201ENST00000380443 INTS3Q68E01 1043 aaKnown RBP29.15■■■□□ 2.26
VPS16-201ENST00000380443 TSPYL4Q9UJ04 414 aa29.15■■■□□ 2.26
VPS16-201ENST00000380443 SLIT3O75094 1523 aa29.15■■■□□ 2.26
VPS16-201ENST00000380443 BRINP3Q76B58 766 aa29.14■■■□□ 2.26
VPS16-201ENST00000380443 GCC1Q96CN9 775 aa29.14■■■□□ 2.26
VPS16-201ENST00000380443 MAP3K5Q99683 1374 aa29.14■■■□□ 2.26
VPS16-201ENST00000380443 FOXO3O43524 673 aa29.13■■■□□ 2.25
VPS16-201ENST00000380443 HSPA1LP34931 641 aa29.13■■■□□ 2.25
VPS16-201ENST00000380443 NUCB1Q02818 461 aa29.1■■■□□ 2.25
VPS16-201ENST00000380443 ORAI2Q96SN7 254 aa29.1■■■□□ 2.25
VPS16-201ENST00000380443 USP19O94966 1318 aa29.09■■■□□ 2.25
VPS16-201ENST00000380443 TRPM3Q9HCF6 1732 aaPredicted RBP29.08■■■□□ 2.25
VPS16-201ENST00000380443 LTV1Q96GA3 475 aaPredicted RBP29.07■■■□□ 2.24
VPS16-201ENST00000380443 GCP02774 474 aa29.06■■■□□ 2.24
VPS16-201ENST00000380443 ARHGEF25Q86VW2 580 aa29.06■■■□□ 2.24
VPS16-201ENST00000380443 TAF7Q15545 349 aaPredicted RBP29.06■■■□□ 2.24
VPS16-201ENST00000380443 KRT28Q7Z3Y7 464 aa29.06■■■□□ 2.24
VPS16-201ENST00000380443 UPF2Q9HAU5 1272 aaKnown RBP29.05■■■□□ 2.24
VPS16-201ENST00000380443 RGS12O14924 1447 aa29.05■■■□□ 2.24
VPS16-201ENST00000380443 AHDC1Q5TGY3 1603 aaPredicted RBP29.05■■■□□ 2.24
VPS16-201ENST00000380443 CHMP4AQ9BY43 222 aa29.04■■■□□ 2.24
VPS16-201ENST00000380443 PHLPP1O60346 1717 aa29.04■■■□□ 2.24
VPS16-201ENST00000380443 NCAPD2Q15021 1401 aa29.04■■■□□ 2.24
VPS16-201ENST00000380443 KRT24Q2M2I5 525 aa29.04■■■□□ 2.24
VPS16-201ENST00000380443 CHD1LQ86WJ1 897 aa29.02■■■□□ 2.24
VPS16-201ENST00000380443 IL17REQ8NFR9 667 aa29.02■■■□□ 2.24
VPS16-201ENST00000380443 SLC4A2P04920 1241 aa29.01■■■□□ 2.24
VPS16-201ENST00000380443 DAXXQ9UER7 740 aaPredicted RBP29.01■■■□□ 2.24
VPS16-201ENST00000380443 AMOTQ4VCS5 1084 aa29.01■■■□□ 2.23
VPS16-201ENST00000380443 CCDC30Q5VVM6 783 aa29.01■■■□□ 2.23
VPS16-201ENST00000380443 NBPF6Q5VWK0 638 aa29.01■■■□□ 2.23
VPS16-201ENST00000380443 NBPF4Q96M43 638 aa29.01■■■□□ 2.23
VPS16-201ENST00000380443 STK31Q9BXU1 1019 aa29.01■■■□□ 2.23
VPS16-201ENST00000380443 NHSL1Q5SYE7 1610 aa29■■■□□ 2.23
VPS16-201ENST00000380443 MIS18AQ9NYP9 233 aa29■■■□□ 2.23
VPS16-201ENST00000380443 CEMIPQ8WUJ3 1361 aa29■■■□□ 2.23
VPS16-201ENST00000380443 RPAP2Q8IXW5 612 aaPredicted RBP28.99■■■□□ 2.23
VPS16-201ENST00000380443 CACNA1FO60840 1977 aa28.99■■■□□ 2.23
VPS16-201ENST00000380443 PLEKHO1Q53GL0 409 aaPredicted RBP28.99■■■□□ 2.23
VPS16-201ENST00000380443 NPHP3Q7Z494 1330 aa28.98■■■□□ 2.23
VPS16-201ENST00000380443 CCT4P50991 539 aaKnown RBP28.98■■■□□ 2.23
VPS16-201ENST00000380443 COL16A1Q07092 1604 aaPredicted RBP28.95■■■□□ 2.23
VPS16-201ENST00000380443 AKAP4Q5JQC9 854 aa28.95■■■□□ 2.23
VPS16-201ENST00000380443 SIRT2Q8IXJ6 389 aa28.95■■■□□ 2.23
VPS16-201ENST00000380443 ALS2Q96Q42 1657 aa28.95■■■□□ 2.23
VPS16-201ENST00000380443 CAMTA1Q9Y6Y1 1673 aa28.95■■■□□ 2.23
VPS16-201ENST00000380443 OVOS2A0A0G2JMS6 1433 aa28.95■■■□□ 2.22
VPS16-201ENST00000380443 MED1Q15648 1581 aaPredicted RBP28.95■■■□□ 2.22
VPS16-201ENST00000380443 USHBP1Q8N6Y0 703 aa28.94■■■□□ 2.22
VPS16-201ENST00000380443 ANKRD44Q8N8A2 993 aa28.94■■■□□ 2.22
VPS16-201ENST00000380443 LMO7Q8WWI1 1683 aa28.93■■■□□ 2.22
VPS16-201ENST00000380443 HOXB7P09629 217 aa28.93■■■□□ 2.22
VPS16-201ENST00000380443 DDX17Q92841 729 aaKnown RBP28.93■■■□□ 2.22
VPS16-201ENST00000380443 C1orf115Q9H7X2 142 aa28.93■■■□□ 2.22
VPS16-201ENST00000380443 DCTPP1Q9H773 170 aa28.92■■■□□ 2.22
VPS16-201ENST00000380443 SEC24BO95487 1268 aa28.92■■■□□ 2.22
VPS16-201ENST00000380443 ANKRD45Q5TZF3 282 aa28.92■■■□□ 2.22
VPS16-201ENST00000380443 LRRC59Q96AG4 307 aaKnown RBP28.92■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms