RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 MATR3P43243 847 aaKnown RBP eCLIP13.54□□□□□ -0.244e-6■■■□□ 16.6
VCL-202ENST00000372755 ZSCAN29Q8IWY8 852 aaPredicted RBP13.54□□□□□ -0.24
VCL-202ENST00000372755 SRGAP3O43295 1099 aa13.54□□□□□ -0.24
VCL-202ENST00000372755 EPB41L2O43491 1005 aaKnown RBP13.54□□□□□ -0.24
VCL-202ENST00000372755 NCOA2Q15596 1464 aa13.54□□□□□ -0.24
VCL-202ENST00000372755 FGD5Q6ZNL6 1462 aa13.54□□□□□ -0.24
VCL-202ENST00000372755 LRRC9Q6ZRR7 1453 aa13.54□□□□□ -0.24
VCL-202ENST00000372755 EIF5P55010 431 aaKnown RBP13.54□□□□□ -0.24
VCL-202ENST00000372755 ZNF397Q8NF99 534 aaPredicted RBP13.54□□□□□ -0.24
VCL-202ENST00000372755 GRPEL1Q9HAV7 217 aa13.54□□□□□ -0.24
VCL-202ENST00000372755 IGF1RP08069 1367 aa13.54□□□□□ -0.24
VCL-202ENST00000372755 PPP1R12BO60237 982 aaPredicted RBP13.53□□□□□ -0.24
VCL-202ENST00000372755 BCAR3O75815 825 aa13.53□□□□□ -0.24
VCL-202ENST00000372755 IGHMBP2P38935 993 aaKnown RBP13.53□□□□□ -0.24
VCL-202ENST00000372755 IMMTQ16891 758 aaKnown RBP13.53□□□□□ -0.24
VCL-202ENST00000372755 CETN2P41208 172 aa13.53□□□□□ -0.24
VCL-202ENST00000372755 KIAA1328Q86T90 577 aa13.53□□□□□ -0.24
VCL-202ENST00000372755 FAM177A1Q8N128 213 aaPredicted RBP13.53□□□□□ -0.24
VCL-202ENST00000372755 CCDC148Q8NFR7 591 aa13.53□□□□□ -0.24
VCL-202ENST00000372755 ZNF428Q96B54 188 aa13.53□□□□□ -0.24
VCL-202ENST00000372755 INCENPQ9NQS7 918 aa13.53□□□□□ -0.24
VCL-202ENST00000372755 USP8P40818 1118 aa13.53□□□□□ -0.24
VCL-202ENST00000372755 RPAP2Q8IXW5 612 aaPredicted RBP13.53□□□□□ -0.24
VCL-202ENST00000372755 ZNF287Q9HBT7 754 aa13.53□□□□□ -0.24
VCL-202ENST00000372755 LRP2BPQ9P2M1 347 aa13.52□□□□□ -0.24
VCL-202ENST00000372755 LRRFIP2Q9Y608 721 aaKnown RBP13.52□□□□□ -0.24
VCL-202ENST00000372755 BTBD11A6QL63 1104 aa13.52□□□□□ -0.24
VCL-202ENST00000372755 CABP1Q9NZU7 370 aa13.52□□□□□ -0.24
VCL-202ENST00000372755 RTEL1-TNFRSF6BF6WH68 1400 aa13.52□□□□□ -0.25
VCL-202ENST00000372755 CASKIN1Q8WXD9 1431 aa13.52□□□□□ -0.25
VCL-202ENST00000372755 RBM10P98175 930 aaKnown RBP13.52□□□□□ -0.25
VCL-202ENST00000372755 TNIP1Q15025 636 aa13.52□□□□□ -0.25
VCL-202ENST00000372755 CWC27Q6UX04 472 aaKnown RBP13.52□□□□□ -0.25
VCL-202ENST00000372755 FAM193AP78312 1265 aa13.51□□□□□ -0.25
VCL-202ENST00000372755 AIDAQ96BJ3 306 aa13.51□□□□□ -0.25
VCL-202ENST00000372755 TMOD2Q9NZR1 351 aa13.51□□□□□ -0.25
VCL-202ENST00000372755 ARHGAP29Q52LW3 1261 aa13.51□□□□□ -0.25
VCL-202ENST00000372755 SMARCA4P51532 1647 aa13.51□□□□□ -0.25
VCL-202ENST00000372755 GBP3Q9H0R5 595 aa13.51□□□□□ -0.25
VCL-202ENST00000372755 CCDC91Q7Z6B0 441 aa13.5□□□□□ -0.25
VCL-202ENST00000372755 ANKRD30BQ9BXX2 1392 aa13.5□□□□□ -0.25
VCL-202ENST00000372755 KIF2AO00139 706 aaPredicted RBP13.5□□□□□ -0.25
VCL-202ENST00000372755 MAP3K11Q16584 847 aa13.5□□□□□ -0.25
VCL-202ENST00000372755 SLC12A5Q9H2X9 1139 aa13.5□□□□□ -0.25
VCL-202ENST00000372755 SYNJ2O15056 1496 aa13.49□□□□□ -0.25
VCL-202ENST00000372755 PLEKHH2Q8IVE3 1493 aa13.49□□□□□ -0.25
VCL-202ENST00000372755 SSR1P43307 286 aaKnown RBP13.49□□□□□ -0.25
VCL-202ENST00000372755 AFAP1Q8N556 730 aa13.49□□□□□ -0.25
VCL-202ENST00000372755 CCDC102AQ96A19 550 aa13.49□□□□□ -0.25
VCL-202ENST00000372755 AKAP2Q9Y2D5 859 aa13.49□□□□□ -0.25
VCL-202ENST00000372755 SEC63Q9UGP8 760 aaKnown RBP13.49□□□□□ -0.25
VCL-202ENST00000372755 USP5P45974 858 aa13.49□□□□□ -0.25
VCL-202ENST00000372755 BACH2Q9BYV9 841 aa13.49□□□□□ -0.25
VCL-202ENST00000372755 ATAD2Q6PL18 1390 aa13.49□□□□□ -0.25
VCL-202ENST00000372755 UQCRHLA0A096LP55 91 aa13.49□□□□□ -0.25
VCL-202ENST00000372755 UQCRHP07919 91 aa13.49□□□□□ -0.25
VCL-202ENST00000372755 IDH1O75874 414 aaKnown RBP13.48□□□□□ -0.25
VCL-202ENST00000372755 FCHSD2O94868 740 aa13.48□□□□□ -0.25
VCL-202ENST00000372755 SPA17Q15506 151 aa13.48□□□□□ -0.25
VCL-202ENST00000372755 TSG101Q99816 390 aa13.48□□□□□ -0.25
VCL-202ENST00000372755 SLC52A1Q9NWF4 448 aa13.48□□□□□ -0.25
VCL-202ENST00000372755 BRPF3Q9ULD4 1205 aa13.48□□□□□ -0.25
VCL-202ENST00000372755 CFAP100Q494V2 611 aa13.48□□□□□ -0.25
VCL-202ENST00000372755 FILIP1Q7Z7B0 1213 aa13.48□□□□□ -0.25
VCL-202ENST00000372755 NUTM2BA6NNL0 878 aaPredicted RBP13.48□□□□□ -0.25
VCL-202ENST00000372755 NUTM2EB1AL46 878 aaPredicted RBP13.48□□□□□ -0.25
VCL-202ENST00000372755 NUTM2AQ8IVF1 878 aaPredicted RBP13.48□□□□□ -0.25
VCL-202ENST00000372755 SLC26A8Q96RN1 970 aa13.48□□□□□ -0.25
VCL-202ENST00000372755 PHAXQ9H814 394 aaKnown RBP13.48□□□□□ -0.25
VCL-202ENST00000372755 PRDM11Q9NQV5 511 aa13.48□□□□□ -0.25
VCL-202ENST00000372755 RPGRIP1LQ68CZ1 1315 aa13.48□□□□□ -0.25
VCL-202ENST00000372755 FKBP15Q5T1M5 1219 aa13.48□□□□□ -0.25
VCL-202ENST00000372755 U3KPZ7 1027 aaPredicted RBP13.48□□□□□ -0.25
VCL-202ENST00000372755 RAB11FIP3O75154 756 aa13.47□□□□□ -0.25
VCL-202ENST00000372755 STARD3NLO95772 234 aa13.47□□□□□ -0.25
VCL-202ENST00000372755 ZSCAN12O43309 604 aa13.47□□□□□ -0.25
VCL-202ENST00000372755 CASTP20810 708 aaKnown RBP13.47□□□□□ -0.25
VCL-202ENST00000372755 PPP4R3AQ6IN85 833 aa13.47□□□□□ -0.25
VCL-202ENST00000372755 UBXN4Q92575 508 aa13.47□□□□□ -0.25
VCL-202ENST00000372755 PDCL2Q8N4E4 241 aa13.47□□□□□ -0.25
VCL-202ENST00000372755 ERBINQ96RT1 1412 aa13.47□□□□□ -0.25
VCL-202ENST00000372755 RAD54L2Q9Y4B4 1467 aa13.47□□□□□ -0.25
VCL-202ENST00000372755 IL1RAPL2Q9NP60 686 aa13.47□□□□□ -0.25
VCL-202ENST00000372755 KIAA1107Q9UPP5 1409 aa13.46□□□□□ -0.25
VCL-202ENST00000372755 NBPF1Q3BBV0 1214 aa13.46□□□□□ -0.25
VCL-202ENST00000372755 VPS36Q86VN1 386 aa13.46□□□□□ -0.25
VCL-202ENST00000372755 CCDC196A0A1B0GTZ2 297 aa13.46□□□□□ -0.25
VCL-202ENST00000372755 METTL24Q5JXM2 366 aa13.46□□□□□ -0.25
VCL-202ENST00000372755 CRACR2AQ9BSW2 395 aa13.46□□□□□ -0.25
VCL-202ENST00000372755 ZNF652Q9Y2D9 606 aa13.46□□□□□ -0.25
VCL-202ENST00000372755 GNAT3A8MTJ3 354 aa13.46□□□□□ -0.26
VCL-202ENST00000372755 KIF1BPQ96EK5 621 aa13.46□□□□□ -0.26
VCL-202ENST00000372755 MCM3P25205 808 aa13.45□□□□□ -0.26
VCL-202ENST00000372755 FGFR1OPO95684 399 aaKnown RBP13.45□□□□□ -0.26
VCL-202ENST00000372755 NFE2L2Q16236 605 aa13.45□□□□□ -0.26
VCL-202ENST00000372755 MCM4P33991 863 aa13.45□□□□□ -0.26
VCL-202ENST00000372755 CAVIN4Q5BKX8 364 aa13.45□□□□□ -0.26
VCL-202ENST00000372755 PIBF1Q8WXW3 757 aa13.45□□□□□ -0.26
VCL-202ENST00000372755 CCDC97Q96F63 343 aaPredicted RBP13.45□□□□□ -0.26
VCL-202ENST00000372755 ANKLE2Q86XL3 938 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms