RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 JCADQ9P266 1359 aa24.21■■□□□ 1.47
CLN3-206ENST00000360019 ZNF853P0CG23 659 aa24.21■■□□□ 1.47
CLN3-206ENST00000360019 AMOTQ4VCS5 1084 aa24.21■■□□□ 1.47
CLN3-206ENST00000360019 LARP1Q6PKG0 1096 aaKnown RBP24.21■■□□□ 1.47
CLN3-206ENST00000360019 RAPGEF4Q8WZA2 1011 aa24.21■■□□□ 1.47
CLN3-206ENST00000360019 IFT57Q9NWB7 429 aa24.21■■□□□ 1.47
CLN3-206ENST00000360019 HTATSF1O43719 755 aaKnown RBP24.2■■□□□ 1.46
CLN3-206ENST00000360019 ADAMTS2O95450 1211 aa24.2■■□□□ 1.46
CLN3-206ENST00000360019 RTF1Q92541 710 aaKnown RBP24.2■■□□□ 1.46
CLN3-206ENST00000360019 NUTM2BA6NNL0 878 aaPredicted RBP24.19■■□□□ 1.46
CLN3-206ENST00000360019 NUTM2EB1AL46 878 aaPredicted RBP24.19■■□□□ 1.46
CLN3-206ENST00000360019 NUTM2AQ8IVF1 878 aaPredicted RBP24.19■■□□□ 1.46
CLN3-206ENST00000360019 CRB1P82279 1406 aa24.19■■□□□ 1.46
CLN3-206ENST00000360019 EVA1CP58658 441 aa24.19■■□□□ 1.46
CLN3-206ENST00000360019 LAS1LQ9Y4W2 734 aaKnown RBP24.19■■□□□ 1.46
CLN3-206ENST00000360019 GNAI1P63096 354 aa24.18■■□□□ 1.46
CLN3-206ENST00000360019 CFAP44Q96MT7 982 aa24.18■■□□□ 1.46
CLN3-206ENST00000360019 CARD10Q9BWT7 1032 aa24.18■■□□□ 1.46
CLN3-206ENST00000360019 LRRC37A3O60309 1634 aa24.17■■□□□ 1.46
CLN3-206ENST00000360019 TATP17735 454 aaPredicted RBP24.17■■□□□ 1.46
CLN3-206ENST00000360019 ZNF530Q6P9A1 599 aaPredicted RBP24.17■■□□□ 1.46
CLN3-206ENST00000360019 PLEKHG2Q9H7P9 1386 aa24.17■■□□□ 1.46
CLN3-206ENST00000360019 PLCH1Q4KWH8 1693 aa24.16■■□□□ 1.46
CLN3-206ENST00000360019 NEFLP07196 543 aa24.16■■□□□ 1.46
CLN3-206ENST00000360019 IL17REQ8NFR9 667 aa24.16■■□□□ 1.46
CLN3-206ENST00000360019 HSPA1LP34931 641 aa24.15■■□□□ 1.46
CLN3-206ENST00000360019 EXOSC9Q06265 439 aaKnown RBP24.15■■□□□ 1.46
CLN3-206ENST00000360019 AKAP4Q5JQC9 854 aa24.15■■□□□ 1.46
CLN3-206ENST00000360019 MBIPQ9NS73 344 aa24.15■■□□□ 1.46
CLN3-206ENST00000360019 FKBP8Q14318 412 aa24.14■■□□□ 1.46
CLN3-206ENST00000360019 RRP1P56182 461 aaKnown RBP24.14■■□□□ 1.45
CLN3-206ENST00000360019 IRX6P78412 446 aaPredicted RBP24.14■■□□□ 1.45
CLN3-206ENST00000360019 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.14■■□□□ 1.45
CLN3-206ENST00000360019 OVOS2A0A0G2JMS6 1433 aa24.13■■□□□ 1.45
CLN3-206ENST00000360019 PKD1L3Q7Z443 1732 aa24.13■■□□□ 1.45
CLN3-206ENST00000360019 CEMIPQ8WUJ3 1361 aa24.12■■□□□ 1.45
CLN3-206ENST00000360019 CHL1O00533 1208 aa24.12■■□□□ 1.45
CLN3-206ENST00000360019 C1orf141Q5JVX7 400 aa24.12■■□□□ 1.45
CLN3-206ENST00000360019 NRAPQ86VF7 1730 aa24.11■■□□□ 1.45
CLN3-206ENST00000360019 PARP4Q9UKK3 1724 aaKnown RBP24.11■■□□□ 1.45
CLN3-206ENST00000360019 SPG7Q9UQ90 795 aa24.11■■□□□ 1.45
CLN3-206ENST00000360019 LGR6Q9HBX8 967 aa24.1■■□□□ 1.45
CLN3-206ENST00000360019 CT47B1P0C2W7 299 aaPredicted RBP24.1■■□□□ 1.45
CLN3-206ENST00000360019 SLIT2O94813 1529 aa24.09■■□□□ 1.45
CLN3-206ENST00000360019 SPATA31A6Q5VVP1 1343 aa24.09■■□□□ 1.45
CLN3-206ENST00000360019 MPRIPQ6WCQ1 1025 aa24.09■■□□□ 1.45
CLN3-206ENST00000360019 USP35Q9P2H5 1018 aa24.09■■□□□ 1.45
CLN3-206ENST00000360019 BCAR3O75815 825 aa24.08■■□□□ 1.45
CLN3-206ENST00000360019 IL2RBP14784 551 aa24.08■■□□□ 1.45
CLN3-206ENST00000360019 RARSP54136 660 aaKnown RBP24.08■■□□□ 1.45
CLN3-206ENST00000360019 LRP6O75581 1613 aa24.08■■□□□ 1.45
CLN3-206ENST00000360019 PHKG2P15735 406 aa24.07■■□□□ 1.44
CLN3-206ENST00000360019 ADAMTS7Q9UKP4 1686 aa24.07■■□□□ 1.44
CLN3-206ENST00000360019 NWD2Q9ULI1 1742 aa24.07■■□□□ 1.44
CLN3-206ENST00000360019 MIS18AQ9NYP9 233 aa24.07■■□□□ 1.44
CLN3-206ENST00000360019 CYP27B1O15528 508 aa24.06■■□□□ 1.44
CLN3-206ENST00000360019 RNMTO43148 476 aaKnown RBP24.06■■□□□ 1.44
CLN3-206ENST00000360019 PLIN1O60240 522 aa24.06■■□□□ 1.44
CLN3-206ENST00000360019 VIRMAQ69YN4 1812 aaKnown RBP24.05■■□□□ 1.44
CLN3-206ENST00000360019 IFNL2Q8IZJ0 200 aa24.05■■□□□ 1.44
CLN3-206ENST00000360019 TSPYL6Q8N831 410 aa24.05■■□□□ 1.44
CLN3-206ENST00000360019 TSPYL4Q9UJ04 414 aa24.05■■□□□ 1.44
CLN3-206ENST00000360019 DISP2A7MBM2 1401 aa24.04■■□□□ 1.44
CLN3-206ENST00000360019 TAF7Q15545 349 aaPredicted RBP24.04■■□□□ 1.44
CLN3-206ENST00000360019 C8orf58Q8NAV2 365 aa24.04■■□□□ 1.44
CLN3-206ENST00000360019 ZCRB1Q8TBF4 217 aaKnown RBP24.04■■□□□ 1.44
CLN3-206ENST00000360019 KDM6AO15550 1401 aaPredicted RBP24.03■■□□□ 1.44
CLN3-206ENST00000360019 SHANK3Q9BYB0 1731 aa24.02■■□□□ 1.44
CLN3-206ENST00000360019 VAMP4O75379 141 aa24.02■■□□□ 1.44
CLN3-206ENST00000360019 C8orf37Q96NL8 207 aa24.02■■□□□ 1.44
CLN3-206ENST00000360019 BCL2L13Q9BXK5 485 aa24.02■■□□□ 1.44
CLN3-206ENST00000360019 KRT24Q2M2I5 525 aa24.01■■□□□ 1.43
CLN3-206ENST00000360019 BABAM1Q9NWV8 329 aa24.01■■□□□ 1.43
CLN3-206ENST00000360019 SPATA31A1Q5TZJ5 1347 aa24.01■■□□□ 1.43
CLN3-206ENST00000360019 PCDH11XQ9BZA7 1347 aa24.01■■□□□ 1.43
CLN3-206ENST00000360019 PCDH11YQ9BZA8 1340 aa24.01■■□□□ 1.43
CLN3-206ENST00000360019 ELL2O00472 640 aaPredicted RBP24■■□□□ 1.43
CLN3-206ENST00000360019 TEFQ10587 303 aa24■■□□□ 1.43
CLN3-206ENST00000360019 TWISTNBQ3B726 338 aaPredicted RBP24■■□□□ 1.43
CLN3-206ENST00000360019 NGLY1Q96IV0 654 aa24■■□□□ 1.43
CLN3-206ENST00000360019 SCN11AQ9UI33 1791 aa24■■□□□ 1.43
CLN3-206ENST00000360019 SSH1Q8WYL5 1049 aa23.99■■□□□ 1.43
CLN3-206ENST00000360019 BCL9LQ86UU0 1499 aa23.99■■□□□ 1.43
CLN3-206ENST00000360019 WNK3Q9BYP7 1800 aa23.98■■□□□ 1.43
CLN3-206ENST00000360019 UNC5CLQ8IV45 518 aa23.98■■□□□ 1.43
CLN3-206ENST00000360019 SPATA31A5Q5VU36 1347 aa23.98■■□□□ 1.43
CLN3-206ENST00000360019 SPATA31A7Q8IWB4 1347 aa23.98■■□□□ 1.43
CLN3-206ENST00000360019 SIPA1L3O60292 1781 aaPredicted RBP23.98■■□□□ 1.43
CLN3-206ENST00000360019 FNBP4Q8N3X1 1017 aaPredicted RBP23.98■■□□□ 1.43
CLN3-206ENST00000360019 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.98■■□□□ 1.43
CLN3-206ENST00000360019 ZNF428Q96B54 188 aa23.98■■□□□ 1.43
CLN3-206ENST00000360019 DCAF5Q96JK2 942 aa23.98■■□□□ 1.43
CLN3-206ENST00000360019 SMC4Q9NTJ3 1288 aa23.97■■□□□ 1.43
CLN3-206ENST00000360019 HSP90AB1P08238 724 aaKnown RBP23.96■■□□□ 1.43
CLN3-206ENST00000360019 C20orf194Q5TEA3 1177 aa23.96■■□□□ 1.43
CLN3-206ENST00000360019 KDM3BQ7LBC6 1761 aa23.96■■□□□ 1.43
CLN3-206ENST00000360019 ALDH1L2Q3SY69 923 aa23.96■■□□□ 1.43
CLN3-206ENST00000360019 MRC1P22897 1456 aa23.95■■□□□ 1.42
CLN3-206ENST00000360019 ERICH6BQ5W0A0 696 aa23.95■■□□□ 1.42
CLN3-206ENST00000360019 SLC52A2Q9HAB3 445 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms