RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 PUS7Q96PZ0 661 aaKnown RBP12.43□□□□□ -0.42
PTPRA-203ENST00000356147 CHMP4BQ9H444 224 aaKnown RBP12.43□□□□□ -0.42
PTPRA-203ENST00000356147 ABCA9Q8IUA7 1624 aa12.43□□□□□ -0.42
PTPRA-203ENST00000356147 CEP85Q6P2H3 762 aa12.42□□□□□ -0.42
PTPRA-203ENST00000356147 CFAP44Q96MT7 982 aa12.42□□□□□ -0.42
PTPRA-203ENST00000356147 ZNF830Q96NB3 372 aaPredicted RBP12.42□□□□□ -0.42
PTPRA-203ENST00000356147 NUTM2FA1L443 756 aa12.42□□□□□ -0.42
PTPRA-203ENST00000356147 ZNF853P0CG23 659 aa12.42□□□□□ -0.42
PTPRA-203ENST00000356147 IL13P35225 146 aa12.42□□□□□ -0.42
PTPRA-203ENST00000356147 BRPF1P55201 1214 aaPredicted RBP12.42□□□□□ -0.42
PTPRA-203ENST00000356147 EXOC6BQ9Y2D4 811 aa12.42□□□□□ -0.42
PTPRA-203ENST00000356147 PTMAP06454 111 aaKnown RBP12.42□□□□□ -0.42
PTPRA-203ENST00000356147 LARP6Q9BRS8 491 aaKnown RBP12.42□□□□□ -0.42
PTPRA-203ENST00000356147 UPF3BQ9BZI7 483 aaKnown RBP12.42□□□□□ -0.42
PTPRA-203ENST00000356147 YTHDC2Q9H6S0 1430 aaKnown RBP12.42□□□□□ -0.42
PTPRA-203ENST00000356147 NOL7Q9UMY1 257 aaKnown RBP12.42□□□□□ -0.42
PTPRA-203ENST00000356147 ANKRD44Q8N8A2 993 aa12.41□□□□□ -0.42
PTPRA-203ENST00000356147 PALD1Q9ULE6 856 aa12.41□□□□□ -0.42
PTPRA-203ENST00000356147 MSH6P52701 1360 aa12.41□□□□□ -0.42
PTPRA-203ENST00000356147 PIK3R4Q99570 1358 aa12.41□□□□□ -0.42
PTPRA-203ENST00000356147 NECTIN2Q92692 538 aa12.41□□□□□ -0.42
PTPRA-203ENST00000356147 ZNF428Q96B54 188 aa12.41□□□□□ -0.42
PTPRA-203ENST00000356147 TMX3Q96JJ7 454 aa12.41□□□□□ -0.42
PTPRA-203ENST00000356147 FAM177BA6PVY3 158 aa12.4□□□□□ -0.42
PTPRA-203ENST00000356147 CASC1Q6TDU7 716 aa12.4□□□□□ -0.42
PTPRA-203ENST00000356147 C17orf53Q8N3J3 647 aaPredicted RBP12.4□□□□□ -0.42
PTPRA-203ENST00000356147 PRDM10Q9NQV6 1147 aa12.4□□□□□ -0.42
PTPRA-203ENST00000356147 RILPL2Q969X0 211 aa12.4□□□□□ -0.42
PTPRA-203ENST00000356147 KNDC1Q76NI1 1749 aa12.4□□□□□ -0.42
PTPRA-203ENST00000356147 NEXMIFQ5QGS0 1516 aa12.4□□□□□ -0.43
PTPRA-203ENST00000356147 ARAP3Q8WWN8 1544 aa12.4□□□□□ -0.43
PTPRA-203ENST00000356147 GADD45BO75293 160 aaPredicted RBP12.4□□□□□ -0.43
PTPRA-203ENST00000356147 SULT6B1Q6IMI4 303 aa12.4□□□□□ -0.43
PTPRA-203ENST00000356147 G2E3Q7L622 706 aa12.4□□□□□ -0.43
PTPRA-203ENST00000356147 PDLIM2Q96JY6 352 aa12.4□□□□□ -0.43
PTPRA-203ENST00000356147 ZKSCAN5Q9Y2L8 839 aa12.4□□□□□ -0.43
PTPRA-203ENST00000356147 LRSAM1Q6UWE0 723 aa12.39□□□□□ -0.43
PTPRA-203ENST00000356147 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.39□□□□□ -0.43
PTPRA-203ENST00000356147 IBTKQ9P2D0 1353 aaPredicted RBP12.39□□□□□ -0.43
PTPRA-203ENST00000356147 ERC2O15083 957 aa12.39□□□□□ -0.43
PTPRA-203ENST00000356147 SLC4A2P04920 1241 aa12.39□□□□□ -0.43
PTPRA-203ENST00000356147 LMTK2Q8IWU2 1503 aa12.39□□□□□ -0.43
PTPRA-203ENST00000356147 SIGLEC1Q9BZZ2 1709 aa12.39□□□□□ -0.43
PTPRA-203ENST00000356147 TRIM6-TRIM34B2RNG4 842 aa12.38□□□□□ -0.43
PTPRA-203ENST00000356147 DNTTIP2Q5QJE6 756 aaKnown RBP12.38□□□□□ -0.43
PTPRA-203ENST00000356147 ANO2Q9NQ90 1003 aa12.38□□□□□ -0.43
PTPRA-203ENST00000356147 PTPRMP28827 1452 aa12.38□□□□□ -0.43
PTPRA-203ENST00000356147 ABCC3O15438 1527 aa12.38□□□□□ -0.43
PTPRA-203ENST00000356147 FRMPD1Q5SYB0 1578 aa12.38□□□□□ -0.43
PTPRA-203ENST00000356147 ATP10DQ9P241 1426 aa12.38□□□□□ -0.43
PTPRA-203ENST00000356147 REC8O95072 547 aa12.38□□□□□ -0.43
PTPRA-203ENST00000356147 RIMS2Q9UQ26 1411 aa12.38□□□□□ -0.43
PTPRA-203ENST00000356147 PLCB2Q00722 1185 aa12.37□□□□□ -0.43
PTPRA-203ENST00000356147 CWC22Q9HCG8 908 aaKnown RBP12.37□□□□□ -0.43
PTPRA-203ENST00000356147 POGZQ7Z3K3 1410 aa12.37□□□□□ -0.43
PTPRA-203ENST00000356147 MAP4K4O95819 1239 aaPredicted RBP12.37□□□□□ -0.43
PTPRA-203ENST00000356147 NPM1P06748 294 aaKnown RBP eCLIP12.37□□□□□ -0.43
PTPRA-203ENST00000356147 PDE1AP54750 535 aa12.37□□□□□ -0.43
PTPRA-203ENST00000356147 RTL1A6NKG5 1358 aa12.36□□□□□ -0.43
PTPRA-203ENST00000356147 FOXO3O43524 673 aa12.36□□□□□ -0.43
PTPRA-203ENST00000356147 ZNF500O60304 480 aaPredicted RBP12.36□□□□□ -0.43
PTPRA-203ENST00000356147 RPAP2Q8IXW5 612 aaPredicted RBP12.35□□□□□ -0.43
PTPRA-203ENST00000356147 TXNDC2Q86VQ3 553 aa12.35□□□□□ -0.43
PTPRA-203ENST00000356147 UNC5CLQ8IV45 518 aa12.35□□□□□ -0.43
PTPRA-203ENST00000356147 COG3Q96JB2 828 aa12.35□□□□□ -0.43
PTPRA-203ENST00000356147 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.35□□□□□ -0.433e-6■■□□□ 11.9
PTPRA-203ENST00000356147 ZFYVE9O95405 1425 aa12.35□□□□□ -0.43
PTPRA-203ENST00000356147 IL25Q9H293 177 aa12.35□□□□□ -0.43
PTPRA-203ENST00000356147 TTC12Q9H892 705 aaPredicted RBP12.35□□□□□ -0.43
PTPRA-203ENST00000356147 USP25Q9UHP3 1055 aa12.35□□□□□ -0.43
PTPRA-203ENST00000356147 MAP2P11137 1827 aaKnown RBP12.34□□□□□ -0.43
PTPRA-203ENST00000356147 LMOD3Q0VAK6 560 aa12.34□□□□□ -0.43
PTPRA-203ENST00000356147 IL1RAPL2Q9NP60 686 aa12.34□□□□□ -0.43
PTPRA-203ENST00000356147 TSPY26PQ9H489 355 aa12.33□□□□□ -0.44
PTPRA-203ENST00000356147 CCDC39Q9UFE4 941 aa12.33□□□□□ -0.44
PTPRA-203ENST00000356147 RGS12O14924 1447 aa12.33□□□□□ -0.44
PTPRA-203ENST00000356147 PNMA6EA0A0J9YXQ4 647 aa12.33□□□□□ -0.44
PTPRA-203ENST00000356147 USP48Q86UV5 1035 aa12.33□□□□□ -0.44
PTPRA-203ENST00000356147 SLC52A1Q9NWF4 448 aa12.33□□□□□ -0.44
PTPRA-203ENST00000356147 BRD1O95696 1058 aa12.32□□□□□ -0.44
PTPRA-203ENST00000356147 MLECQ14165 292 aa12.32□□□□□ -0.44
PTPRA-203ENST00000356147 EIF4A2Q14240 407 aaKnown RBP12.32□□□□□ -0.44
PTPRA-203ENST00000356147 HS1BP3Q53T59 392 aa12.32□□□□□ -0.44
PTPRA-203ENST00000356147 HSP90AB2PQ58FF8 381 aa12.32□□□□□ -0.44
PTPRA-203ENST00000356147 ESYT1Q9BSJ8 1104 aa12.32□□□□□ -0.44
PTPRA-203ENST00000356147 HECW2Q9P2P5 1572 aa12.32□□□□□ -0.44
PTPRA-203ENST00000356147 PIK3C2BO00750 1634 aa12.32□□□□□ -0.44
PTPRA-203ENST00000356147 ARHGEF40Q8TER5 1519 aa12.32□□□□□ -0.44
PTPRA-203ENST00000356147 MYO5BQ9ULV0 1848 aa12.32□□□□□ -0.44
PTPRA-203ENST00000356147 HCLS1P14317 486 aaPredicted RBP12.31□□□□□ -0.44
PTPRA-203ENST00000356147 CPA1P15085 419 aa12.31□□□□□ -0.44
PTPRA-203ENST00000356147 DDX54Q8TDD1 881 aaKnown RBP12.31□□□□□ -0.44
PTPRA-203ENST00000356147 MBD3O95983 291 aa12.31□□□□□ -0.44
PTPRA-203ENST00000356147 NUTM1Q86Y26 1132 aa12.31□□□□□ -0.44
PTPRA-203ENST00000356147 CNPY2Q9Y2B0 182 aa12.31□□□□□ -0.44
PTPRA-203ENST00000356147 NUDT16Q96DE0 195 aaKnown RBP12.3□□□□□ -0.44
PTPRA-203ENST00000356147 CHL1O00533 1208 aa12.3□□□□□ -0.44
PTPRA-203ENST00000356147 HMMRO75330 724 aa12.3□□□□□ -0.44
PTPRA-203ENST00000356147 SASS6Q6UVJ0 657 aa12.3□□□□□ -0.44
PTPRA-203ENST00000356147 ZHX1Q9UKY1 873 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms