RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 PLEKHO1Q53GL0 409 aaPredicted RBP15.88■□□□□ 0.13
SPTLC1-202ENST00000337841 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.88■□□□□ 0.13
SPTLC1-202ENST00000337841 WDR43Q15061 677 aaKnown RBP eCLIP15.87■□□□□ 0.13
SPTLC1-202ENST00000337841 AMOTQ4VCS5 1084 aa15.87■□□□□ 0.13
SPTLC1-202ENST00000337841 ILDR2Q71H61 639 aa15.87■□□□□ 0.13
SPTLC1-202ENST00000337841 AEBP1Q8IUX7 1158 aa15.87■□□□□ 0.13
SPTLC1-202ENST00000337841 DDX54Q8TDD1 881 aaKnown RBP15.87■□□□□ 0.13
SPTLC1-202ENST00000337841 RGS12O14924 1447 aa15.86■□□□□ 0.13
SPTLC1-202ENST00000337841 NEFMP07197 916 aa15.86■□□□□ 0.13
SPTLC1-202ENST00000337841 MRS2Q9HD23 443 aa15.86■□□□□ 0.13
SPTLC1-202ENST00000337841 DISP2A7MBM2 1401 aa15.85■□□□□ 0.13
SPTLC1-202ENST00000337841 COL3A1P02461 1466 aaPredicted RBP15.84■□□□□ 0.13
SPTLC1-202ENST00000337841 FAM196AQ6ZSG2 479 aa15.84■□□□□ 0.13
SPTLC1-202ENST00000337841 KDRP35968 1356 aa15.84■□□□□ 0.13
SPTLC1-202ENST00000337841 NCAPD2Q15021 1401 aa15.84■□□□□ 0.13
SPTLC1-202ENST00000337841 FAM208AQ9UK61 1670 aaKnown RBP15.83■□□□□ 0.13
SPTLC1-202ENST00000337841 MARCH10Q8NA82 808 aaPredicted RBP15.83■□□□□ 0.12
SPTLC1-202ENST00000337841 PRKAR2BP31323 418 aa15.82■□□□□ 0.12
SPTLC1-202ENST00000337841 CCDC184Q52MB2 194 aa15.82■□□□□ 0.12
SPTLC1-202ENST00000337841 IFNL2Q8IZJ0 200 aa15.82■□□□□ 0.12
SPTLC1-202ENST00000337841 RSPH6AQ9H0K4 717 aa15.82■□□□□ 0.12
SPTLC1-202ENST00000337841 PLEKHG2Q9H7P9 1386 aa15.82■□□□□ 0.12
SPTLC1-202ENST00000337841 OVOS2A0A0G2JMS6 1433 aa15.82■□□□□ 0.12
SPTLC1-202ENST00000337841 FAM182BQ5T319 152 aa15.81■□□□□ 0.12
SPTLC1-202ENST00000337841 PCDH11XQ9BZA7 1347 aa15.81■□□□□ 0.12
SPTLC1-202ENST00000337841 PCDH11YQ9BZA8 1340 aa15.81■□□□□ 0.12
SPTLC1-202ENST00000337841 ADAMTS8Q9UP79 889 aa15.81■□□□□ 0.12
SPTLC1-202ENST00000337841 MEGF6O75095 1541 aa15.8■□□□□ 0.12
SPTLC1-202ENST00000337841 CCER2I3L3R5 266 aa15.8■□□□□ 0.12
SPTLC1-202ENST00000337841 HSP90AB1P08238 724 aaKnown RBP15.8■□□□□ 0.12
SPTLC1-202ENST00000337841 C1orf141Q5JVX7 400 aa15.8■□□□□ 0.12
SPTLC1-202ENST00000337841 ZNF530Q6P9A1 599 aaPredicted RBP15.8■□□□□ 0.12
SPTLC1-202ENST00000337841 MIER1Q8N108 512 aa15.79■□□□□ 0.12
SPTLC1-202ENST00000337841 GAS2L2Q8NHY3 880 aa15.79■□□□□ 0.12
SPTLC1-202ENST00000337841 PNISRQ8TF01 805 aaKnown RBP15.79■□□□□ 0.12
SPTLC1-202ENST00000337841 TNS2Q63HR2 1409 aa15.78■□□□□ 0.12
SPTLC1-202ENST00000337841 MAPK8IP3Q9UPT6 1336 aa15.78■□□□□ 0.12
SPTLC1-202ENST00000337841 CYP27B1O15528 508 aa15.78■□□□□ 0.12
SPTLC1-202ENST00000337841 PHKG2P15735 406 aa15.78■□□□□ 0.12
SPTLC1-202ENST00000337841 MTHFSDQ2M296 383 aaKnown RBP15.78■□□□□ 0.12
SPTLC1-202ENST00000337841 PHACTR3Q96KR7 559 aa15.78■□□□□ 0.12
SPTLC1-202ENST00000337841 THSD7AQ9UPZ6 1657 aa15.78■□□□□ 0.12
SPTLC1-202ENST00000337841 NKX1-1Q15270 411 aaPredicted RBP15.77■□□□□ 0.12
SPTLC1-202ENST00000337841 AKAP4Q5JQC9 854 aa15.77■□□□□ 0.12
SPTLC1-202ENST00000337841 CCDC125Q86Z20 511 aa15.77■□□□□ 0.12
SPTLC1-202ENST00000337841 RGPD2P0DJD1 1756 aa15.77■□□□□ 0.11
SPTLC1-202ENST00000337841 RUNDC1Q96C34 613 aa15.76■□□□□ 0.11
SPTLC1-202ENST00000337841 PLEKHF1Q96S99 279 aa15.76■□□□□ 0.11
SPTLC1-202ENST00000337841 SF3B2Q13435 895 aaKnown RBP15.75■□□□□ 0.11
SPTLC1-202ENST00000337841 DCAF5Q96JK2 942 aa15.75■□□□□ 0.11
SPTLC1-202ENST00000337841 GNAT3A8MTJ3 354 aa15.74■□□□□ 0.11
SPTLC1-202ENST00000337841 TRIM37O94972 964 aa15.74■□□□□ 0.11
SPTLC1-202ENST00000337841 FAM9BQ8IZU0 186 aa15.74■□□□□ 0.11
SPTLC1-202ENST00000337841 ACSBG1Q96GR2 724 aa15.74■□□□□ 0.11
SPTLC1-202ENST00000337841 RGPD1P0DJD0 1748 aa15.74■□□□□ 0.11
SPTLC1-202ENST00000337841 PARP4Q9UKK3 1724 aaKnown RBP15.74■□□□□ 0.11
SPTLC1-202ENST00000337841 PRIM1P49642 420 aaKnown RBP15.73■□□□□ 0.11
SPTLC1-202ENST00000337841 MPRIPQ6WCQ1 1025 aa15.73■□□□□ 0.11
SPTLC1-202ENST00000337841 CCDC146Q8IYE0 955 aa15.73■□□□□ 0.11
SPTLC1-202ENST00000337841 RTF1Q92541 710 aaKnown RBP15.73■□□□□ 0.11
SPTLC1-202ENST00000337841 SYTL4Q96C24 671 aaPredicted RBP15.73■□□□□ 0.11
SPTLC1-202ENST00000337841 BCL11BQ9C0K0 894 aaPredicted RBP15.73■□□□□ 0.11
SPTLC1-202ENST00000337841 BCL9O00512 1426 aa15.73■□□□□ 0.11
SPTLC1-202ENST00000337841 ERVV-2B6SEH9 535 aa15.72■□□□□ 0.11
SPTLC1-202ENST00000337841 HTATSF1O43719 755 aaKnown RBP15.72■□□□□ 0.11
SPTLC1-202ENST00000337841 NFE2L2Q16236 605 aa15.72■□□□□ 0.11
SPTLC1-202ENST00000337841 CABP4P57796 275 aa15.71■□□□□ 0.11
SPTLC1-202ENST00000337841 UPF1Q92900 1129 aaKnown RBP eCLIP15.71■□□□□ 0.11
SPTLC1-202ENST00000337841 LRRC37A3O60309 1634 aa15.7■□□□□ 0.1
SPTLC1-202ENST00000337841 RNMTO43148 476 aaKnown RBP15.7■□□□□ 0.1
SPTLC1-202ENST00000337841 KCNQ2O43526 872 aa15.7■□□□□ 0.1
SPTLC1-202ENST00000337841 APBA3O96018 575 aa15.7■□□□□ 0.1
SPTLC1-202ENST00000337841 RIPK4P57078 832 aa15.7■□□□□ 0.1
SPTLC1-202ENST00000337841 TMPOP42166 694 aaKnown RBP15.69■□□□□ 0.1
SPTLC1-202ENST00000337841 LGR6Q9HBX8 967 aa15.69■□□□□ 0.1
SPTLC1-202ENST00000337841 RNF216Q9NWF9 866 aaPredicted RBP15.69■□□□□ 0.1
SPTLC1-202ENST00000337841 TMOD3Q9NYL9 352 aa15.69■□□□□ 0.1
SPTLC1-202ENST00000337841 MAP3K5Q99683 1374 aa15.68■□□□□ 0.1
SPTLC1-202ENST00000337841 SOCS7O14512 581 aa15.68■□□□□ 0.1
SPTLC1-202ENST00000337841 APAF1O14727 1248 aa15.68■□□□□ 0.1
SPTLC1-202ENST00000337841 LMOD3Q0VAK6 560 aa15.68■□□□□ 0.1
SPTLC1-202ENST00000337841 NEUROD2Q15784 382 aa15.68■□□□□ 0.1
SPTLC1-202ENST00000337841 BRWD3Q6RI45 1802 aa15.68■□□□□ 0.1
SPTLC1-202ENST00000337841 WNK3Q9BYP7 1800 aa15.67■□□□□ 0.1
SPTLC1-202ENST00000337841 BAG6P46379 1132 aa15.67■□□□□ 0.1
SPTLC1-202ENST00000337841 TEFQ10587 303 aa15.67■□□□□ 0.1
SPTLC1-202ENST00000337841 IL17REQ8NFR9 667 aa15.67■□□□□ 0.1
SPTLC1-202ENST00000337841 NFATC2IPQ8NCF5 419 aa15.66■□□□□ 0.1
SPTLC1-202ENST00000337841 PIGBQ92521 554 aa15.66■□□□□ 0.1
SPTLC1-202ENST00000337841 RRP7AQ9Y3A4 280 aaKnown RBP15.66■□□□□ 0.1
SPTLC1-202ENST00000337841 PTF1AQ7RTS3 328 aa15.65■□□□□ 0.1
SPTLC1-202ENST00000337841 SMARCC1Q92922 1105 aaPredicted RBP15.65■□□□□ 0.1
SPTLC1-202ENST00000337841 SLC52A2Q9HAB3 445 aa15.65■□□□□ 0.1
SPTLC1-202ENST00000337841 PLSCR1O15162 318 aa15.64■□□□□ 0.09
SPTLC1-202ENST00000337841 MCM10Q7L590 875 aa15.64■□□□□ 0.09
SPTLC1-202ENST00000337841 PKD1L3Q7Z443 1732 aa15.64■□□□□ 0.09
SPTLC1-202ENST00000337841 DCTN1Q14203 1278 aa15.63■□□□□ 0.09
SPTLC1-202ENST00000337841 HMGB2P26583 209 aaKnown RBP15.62■□□□□ 0.09
SPTLC1-202ENST00000337841 TAF7Q15545 349 aaPredicted RBP15.62■□□□□ 0.09
SPTLC1-202ENST00000337841 NGEFQ8N5V2 710 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms