RNA–Protein interactions for RNA: ENST00000329397.5

PTP4A3-201, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A3, Length 2,785 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-201ENST00000329397 PKP1Q13835 747 aa21.52■■□□□ 1.04
PTP4A3-201ENST00000329397 TTC22Q5TAA0 569 aa21.52■■□□□ 1.03
PTP4A3-201ENST00000329397 FOXO3O43524 673 aa21.51■■□□□ 1.03
PTP4A3-201ENST00000329397 CIZ1Q9ULV3 898 aaPredicted RBP21.51■■□□□ 1.03
PTP4A3-201ENST00000329397 DLC1Q96QB1 1528 aa21.51■■□□□ 1.03
PTP4A3-201ENST00000329397 ERBB4Q15303 1308 aa21.51■■□□□ 1.03
PTP4A3-201ENST00000329397 F6X3S4 739 aa21.5■■□□□ 1.03
PTP4A3-201ENST00000329397 ATP10DQ9P241 1426 aa21.5■■□□□ 1.03
PTP4A3-201ENST00000329397 CEP85Q6P2H3 762 aa21.5■■□□□ 1.03
PTP4A3-201ENST00000329397 SLC4A10Q6U841 1118 aa21.5■■□□□ 1.03
PTP4A3-201ENST00000329397 AATKQ6ZMQ8 1374 aa21.49■■□□□ 1.03
PTP4A3-201ENST00000329397 TSHZ3Q63HK5 1081 aa21.49■■□□□ 1.03
PTP4A3-201ENST00000329397 CHAMP1Q96JM3 812 aa21.49■■□□□ 1.03
PTP4A3-201ENST00000329397 RGS12O14924 1447 aa21.49■■□□□ 1.03
PTP4A3-201ENST00000329397 NRXN3Q9Y4C0 1643 aa21.49■■□□□ 1.03
PTP4A3-201ENST00000329397 SDSP20132 328 aa21.49■■□□□ 1.03
PTP4A3-201ENST00000329397 INTS3Q68E01 1043 aaKnown RBP21.48■■□□□ 1.03
PTP4A3-201ENST00000329397 ANKRD44Q8N8A2 993 aa21.48■■□□□ 1.03
PTP4A3-201ENST00000329397 NAP1L5Q96NT1 182 aaPredicted RBP21.48■■□□□ 1.03
PTP4A3-201ENST00000329397 G2E3Q7L622 706 aa21.48■■□□□ 1.03
PTP4A3-201ENST00000329397 SLC4A2P04920 1241 aa21.47■■□□□ 1.03
PTP4A3-201ENST00000329397 RBM10P98175 930 aaKnown RBP21.47■■□□□ 1.03
PTP4A3-201ENST00000329397 USP26Q9BXU7 913 aa21.47■■□□□ 1.03
PTP4A3-201ENST00000329397 BAG4O95429 457 aaKnown RBP21.46■■□□□ 1.03
PTP4A3-201ENST00000329397 GLIPR1L2Q4G1C9 344 aa21.45■■□□□ 1.02
PTP4A3-201ENST00000329397 MCTP1Q6DN14 999 aa21.45■■□□□ 1.02
PTP4A3-201ENST00000329397 ZGPATQ8N5A5 531 aaKnown RBP21.45■■□□□ 1.02
PTP4A3-201ENST00000329397 DDX49Q9Y6V7 483 aaKnown RBP21.45■■□□□ 1.02
PTP4A3-201ENST00000329397 RTL1A6NKG5 1358 aa21.45■■□□□ 1.02
PTP4A3-201ENST00000329397 CHL1O00533 1208 aa21.45■■□□□ 1.02
PTP4A3-201ENST00000329397 NECTIN2Q92692 538 aa21.44■■□□□ 1.02
PTP4A3-201ENST00000329397 MON2Q7Z3U7 1717 aa21.44■■□□□ 1.02
PTP4A3-201ENST00000329397 ACEP12821 1306 aa21.44■■□□□ 1.02
PTP4A3-201ENST00000329397 NCLP19338 710 aaKnown RBP21.44■■□□□ 1.02
PTP4A3-201ENST00000329397 FOXD4L5Q5VV16 416 aaPredicted RBP21.44■■□□□ 1.02
PTP4A3-201ENST00000329397 FOXD4L4Q8WXT5 416 aaPredicted RBP21.44■■□□□ 1.02
PTP4A3-201ENST00000329397 ROBO2Q9HCK4 1378 aa21.43■■□□□ 1.02
PTP4A3-201ENST00000329397 TTC21BQ7Z4L5 1316 aa21.43■■□□□ 1.02
PTP4A3-201ENST00000329397 SPATA31D1Q6ZQQ2 1576 aa21.42■■□□□ 1.02
PTP4A3-201ENST00000329397 RABEP1Q15276 862 aa21.42■■□□□ 1.02
PTP4A3-201ENST00000329397 C3P01024 1663 aa21.42■■□□□ 1.02
PTP4A3-201ENST00000329397 CLCN1P35523 988 aa21.42■■□□□ 1.02
PTP4A3-201ENST00000329397 RIMS1Q86UR5 1692 aaKnown RBP21.41■■□□□ 1.02
PTP4A3-201ENST00000329397 EXOC6BQ9Y2D4 811 aa21.41■■□□□ 1.02
PTP4A3-201ENST00000329397 ITSN1Q15811 1721 aa21.41■■□□□ 1.02
PTP4A3-201ENST00000329397 ESPNB1AK53 854 aa21.4■■□□□ 1.02
PTP4A3-201ENST00000329397 PLPPR3Q6T4P5 718 aa21.4■■□□□ 1.02
PTP4A3-201ENST00000329397 ESF1Q9H501 851 aaKnown RBP21.4■■□□□ 1.02
PTP4A3-201ENST00000329397 RPAP2Q8IXW5 612 aaPredicted RBP21.4■■□□□ 1.02
PTP4A3-201ENST00000329397 TRIM44Q96DX7 344 aaPredicted RBP21.4■■□□□ 1.02
PTP4A3-201ENST00000329397 SKOR2Q2VWA4 1001 aaPredicted RBP21.39■■□□□ 1.02
PTP4A3-201ENST00000329397 MAP3K19Q56UN5 1328 aa21.39■■□□□ 1.01
PTP4A3-201ENST00000329397 GOLGA6L22H0YM25 854 aa21.39■■□□□ 1.01
PTP4A3-201ENST00000329397 TSPYL4Q9UJ04 414 aa21.39■■□□□ 1.01
PTP4A3-201ENST00000329397 MTHFSDQ2M296 383 aaKnown RBP21.38■■□□□ 1.01
PTP4A3-201ENST00000329397 CAVIN1Q6NZI2 390 aaKnown RBP21.38■■□□□ 1.01
PTP4A3-201ENST00000329397 NOL8Q76FK4 1167 aaKnown RBP21.38■■□□□ 1.01
PTP4A3-201ENST00000329397 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.38■■□□□ 1.01
PTP4A3-201ENST00000329397 AKAP12Q02952 1782 aa21.38■■□□□ 1.01
PTP4A3-201ENST00000329397 PEAK1Q9H792 1746 aa21.37■■□□□ 1.01
PTP4A3-201ENST00000329397 SLC26A8Q96RN1 970 aa21.37■■□□□ 1.01
PTP4A3-201ENST00000329397 KIF24Q5T7B8 1368 aa21.36■■□□□ 1.01
PTP4A3-201ENST00000329397 NASPP49321 788 aaPredicted RBP21.35■■□□□ 1.01
PTP4A3-201ENST00000329397 RBM27Q9P2N5 1060 aaKnown RBP21.35■■□□□ 1.01
PTP4A3-201ENST00000329397 KLHL40Q2TBA0 621 aa21.35■■□□□ 1.01
PTP4A3-201ENST00000329397 CASC1Q6TDU7 716 aa21.34■■□□□ 1.01
PTP4A3-201ENST00000329397 PTPRCP08575 1304 aa21.34■■□□□ 1.01
PTP4A3-201ENST00000329397 CRB1P82279 1406 aa21.34■■□□□ 1.01
PTP4A3-201ENST00000329397 NRKQ7Z2Y5 1582 aa21.33■■□□□ 1.01
PTP4A3-201ENST00000329397 PRPF40AO75400 957 aaKnown RBP21.33■■□□□ 1.01
PTP4A3-201ENST00000329397 PDE1AP54750 535 aa21.33■■□□□ 1.01
PTP4A3-201ENST00000329397 RTF1Q92541 710 aaKnown RBP21.33■■□□□ 1.01
PTP4A3-201ENST00000329397 NUTM2GQ5VZR2 741 aa21.33■■□□□ 1
PTP4A3-201ENST00000329397 ISY1Q9ULR0 285 aaKnown RBP21.33■■□□□ 1
PTP4A3-201ENST00000329397 OVOS2A0A0J9YW53 1432 aa21.33■■□□□ 1
PTP4A3-201ENST00000329397 OVOS2Q6IE36 1432 aa21.33■■□□□ 1
PTP4A3-201ENST00000329397 LMBRD1Q9NUN5 540 aa21.32■■□□□ 1
PTP4A3-201ENST00000329397 ZDHHC9Q9Y397 364 aa21.32■■□□□ 1
PTP4A3-201ENST00000329397 REREQ9P2R6 1566 aa21.32■■□□□ 1
PTP4A3-201ENST00000329397 KIAA0232Q92628 1395 aa21.32■■□□□ 1
PTP4A3-201ENST00000329397 ST18O60284 1047 aa21.32■■□□□ 1
PTP4A3-201ENST00000329397 PNMA6EA0A0J9YXQ4 647 aa21.31■■□□□ 1
PTP4A3-201ENST00000329397 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.31■■□□□ 1
PTP4A3-201ENST00000329397 ERC2O15083 957 aa21.31■■□□□ 1
PTP4A3-201ENST00000329397 CYP2E1P05181 493 aaPredicted RBP21.31■■□□□ 1
PTP4A3-201ENST00000329397 LTKP29376 864 aa21.31■■□□□ 1
PTP4A3-201ENST00000329397 DIP2BQ9P265 1576 aa21.31■■□□□ 1
PTP4A3-201ENST00000329397 NEK4P51957 841 aa21.31■■□□□ 1
PTP4A3-201ENST00000329397 FOXD4L6Q3SYB3 417 aaPredicted RBP21.31■■□□□ 1
PTP4A3-201ENST00000329397 FOXD4L3Q6VB84 417 aaPredicted RBP21.31■■□□□ 1
PTP4A3-201ENST00000329397 PALD1Q9ULE6 856 aa21.3■■□□□ 1
PTP4A3-201ENST00000329397 USP6P35125 1406 aa21.3■■□□□ 1
PTP4A3-201ENST00000329397 AGLP35573 1532 aa21.3■■□□□ 1
PTP4A3-201ENST00000329397 REC8O95072 547 aa21.3■■□□□ 1
PTP4A3-201ENST00000329397 NUCB2P80303 420 aa21.3■■□□□ 1
PTP4A3-201ENST00000329397 FKBP5Q13451 457 aaPredicted RBP21.3■■□□□ 1
PTP4A3-201ENST00000329397 ZSCAN23Q3MJ62 389 aa21.3■■□□□ 1
PTP4A3-201ENST00000329397 RILPL2Q969X0 211 aa21.3■■□□□ 1
PTP4A3-201ENST00000329397 NSFL1CQ9UNZ2 370 aaKnown RBP21.3■■□□□ 1
PTP4A3-201ENST00000329397 HMMRO75330 724 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms