RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 LMTK3Q96Q04 1460 aa14.43□□□□□ -0.1
SHMT2-201ENST00000328923 HSP90B1P14625 803 aaKnown RBP14.42□□□□□ -0.1
SHMT2-201ENST00000328923 PLPPR3Q6T4P5 718 aa14.42□□□□□ -0.1
SHMT2-201ENST00000328923 CLEC17AQ6ZS10 378 aa14.42□□□□□ -0.1
SHMT2-201ENST00000328923 CARD10Q9BWT7 1032 aa14.42□□□□□ -0.1
SHMT2-201ENST00000328923 TTC12Q9H892 705 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-201ENST00000328923 MORC2Q9Y6X9 1032 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-201ENST00000328923 FER1L4A9Z1Z3 1794 aa14.42□□□□□ -0.1
SHMT2-201ENST00000328923 HNRNPH2P55795 449 aaKnown RBP14.42□□□□□ -0.1
SHMT2-201ENST00000328923 LMBRD1Q9NUN5 540 aa14.42□□□□□ -0.1
SHMT2-201ENST00000328923 PCDHB15Q9Y5E8 787 aa14.42□□□□□ -0.1
SHMT2-201ENST00000328923 IQSEC2Q5JU85 1478 aa14.41□□□□□ -0.1
SHMT2-201ENST00000328923 ADGRF5Q8IZF2 1346 aa14.41□□□□□ -0.1
SHMT2-201ENST00000328923 SYCE3A1L190 88 aa14.41□□□□□ -0.1
SHMT2-201ENST00000328923 CD2BP2O95400 341 aaKnown RBP14.41□□□□□ -0.1
SHMT2-201ENST00000328923 LRSAM1Q6UWE0 723 aa14.41□□□□□ -0.1
SHMT2-201ENST00000328923 SPTLC3Q9NUV7 552 aa14.41□□□□□ -0.1
SHMT2-201ENST00000328923 RARSP54136 660 aaKnown RBP14.41□□□□□ -0.1
SHMT2-201ENST00000328923 SHPRHQ149N8 1683 aa14.41□□□□□ -0.1
SHMT2-201ENST00000328923 NRXN1Q9ULB1 1477 aa14.4□□□□□ -0.1
SHMT2-201ENST00000328923 NOS1P29475 1434 aa14.4□□□□□ -0.1
SHMT2-201ENST00000328923 DHX16O60231 1041 aaKnown RBP14.4□□□□□ -0.1
SHMT2-201ENST00000328923 DMRT2Q9Y5R5 561 aa14.4□□□□□ -0.1
SHMT2-201ENST00000328923 DIAPH3Q9NSV4 1193 aa14.4□□□□□ -0.1
SHMT2-201ENST00000328923 PPLO60437 1756 aa14.39□□□□□ -0.11
SHMT2-201ENST00000328923 GPT2Q8TD30 523 aa14.39□□□□□ -0.11
SHMT2-201ENST00000328923 MYCBPQ99417 103 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-201ENST00000328923 ARHGAP31Q2M1Z3 1444 aa14.39□□□□□ -0.11
SHMT2-201ENST00000328923 KIF18AQ8NI77 898 aa14.39□□□□□ -0.11
SHMT2-201ENST00000328923 PIK3C2BO00750 1634 aa14.39□□□□□ -0.11
SHMT2-201ENST00000328923 CHGAP10645 457 aaKnown RBP14.38□□□□□ -0.11
SHMT2-201ENST00000328923 CFAP70Q5T0N1 1121 aa14.38□□□□□ -0.11
SHMT2-201ENST00000328923 KRT222Q8N1A0 295 aa14.38□□□□□ -0.11
SHMT2-201ENST00000328923 GAS2L2Q8NHY3 880 aa14.38□□□□□ -0.11
SHMT2-201ENST00000328923 PHF23Q9BUL5 403 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-201ENST00000328923 ST7Q9NRC1 585 aa14.38□□□□□ -0.11
SHMT2-201ENST00000328923 GYS2P54840 703 aa14.38□□□□□ -0.11
SHMT2-201ENST00000328923 CHAF1AQ13111 956 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-201ENST00000328923 TMEM63CQ9P1W3 806 aa14.38□□□□□ -0.11
SHMT2-201ENST00000328923 PPP6R1Q9UPN7 881 aa14.38□□□□□ -0.11
SHMT2-201ENST00000328923 BRPF1P55201 1214 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-201ENST00000328923 NCAPGQ9BPX3 1015 aa14.37□□□□□ -0.11
SHMT2-201ENST00000328923 GRIPAP1Q4V328 841 aa14.37□□□□□ -0.11
SHMT2-201ENST00000328923 WDR63Q8IWG1 891 aa14.37□□□□□ -0.11
SHMT2-201ENST00000328923 SMC4Q9NTJ3 1288 aa14.37□□□□□ -0.11
SHMT2-201ENST00000328923 NAA30Q147X3 362 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-201ENST00000328923 CLTCQ00610 1675 aaKnown RBP14.36□□□□□ -0.11
SHMT2-201ENST00000328923 PRPF40AO75400 957 aaKnown RBP14.36□□□□□ -0.11
SHMT2-201ENST00000328923 FBXO41Q8TF61 875 aa14.36□□□□□ -0.11
SHMT2-201ENST00000328923 RASSF4Q9H2L5 321 aa14.36□□□□□ -0.11
SHMT2-201ENST00000328923 RLBP1P12271 317 aa14.35□□□□□ -0.11
SHMT2-201ENST00000328923 HSPA2P54652 639 aa14.35□□□□□ -0.11
SHMT2-201ENST00000328923 CCDC27Q2M243 656 aa14.35□□□□□ -0.11
SHMT2-201ENST00000328923 ICE2Q659A1 982 aa14.35□□□□□ -0.11
SHMT2-201ENST00000328923 EGFL6Q8IUX8 553 aa14.35□□□□□ -0.11
SHMT2-201ENST00000328923 GPATCH11Q8N954 259 aa14.35□□□□□ -0.11
SHMT2-201ENST00000328923 TOMM22Q9NS69 142 aa14.35□□□□□ -0.11
SHMT2-201ENST00000328923 K7ELQ4 463 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-201ENST00000328923 MVPQ14764 893 aaKnown RBP14.34□□□□□ -0.11
SHMT2-201ENST00000328923 NSFL1CQ9UNZ2 370 aaKnown RBP14.34□□□□□ -0.11
SHMT2-201ENST00000328923 RPGRIP1LQ68CZ1 1315 aa14.34□□□□□ -0.11
SHMT2-201ENST00000328923 HDAC1Q13547 482 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-201ENST00000328923 CEP83Q9Y592 693 aa14.34□□□□□ -0.11
SHMT2-201ENST00000328923 SETBP1Q9Y6X0 1596 aa14.34□□□□□ -0.11
SHMT2-201ENST00000328923 PREX1Q8TCU6 1659 aa14.33□□□□□ -0.11
SHMT2-201ENST00000328923 CYP2C19P33261 490 aa14.33□□□□□ -0.12
SHMT2-201ENST00000328923 FAM43BQ6ZT52 329 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-201ENST00000328923 MYO3AQ8NEV4 1616 aa14.33□□□□□ -0.12
SHMT2-201ENST00000328923 CT47B1P0C2W7 299 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-201ENST00000328923 ERVK-7P63135 1459 aa14.33□□□□□ -0.12
SHMT2-201ENST00000328923 NFATC2IPQ8NCF5 419 aa14.32□□□□□ -0.12
SHMT2-201ENST00000328923 RUNDC1Q96C34 613 aa14.32□□□□□ -0.12
SHMT2-201ENST00000328923 KIF2CQ99661 725 aa14.32□□□□□ -0.12
SHMT2-201ENST00000328923 SRPK2P78362 688 aaKnown RBP14.32□□□□□ -0.12
SHMT2-201ENST00000328923 C14orf37Q86TY3 774 aa14.32□□□□□ -0.12
SHMT2-201ENST00000328923 RBM42Q9BTD8 480 aaKnown RBP14.32□□□□□ -0.12
SHMT2-201ENST00000328923 USP32Q8NFA0 1604 aa14.31□□□□□ -0.12
SHMT2-201ENST00000328923 TRIM66O15016 1216 aa14.31□□□□□ -0.12
SHMT2-201ENST00000328923 PKP1Q13835 747 aa14.31□□□□□ -0.12
SHMT2-201ENST00000328923 CHAMP1Q96JM3 812 aa14.31□□□□□ -0.12
SHMT2-201ENST00000328923 CCDC172P0C7W6 258 aa14.31□□□□□ -0.12
SHMT2-201ENST00000328923 ZNF446Q9NWS9 450 aa14.31□□□□□ -0.12
SHMT2-201ENST00000328923 NEXMIFQ5QGS0 1516 aa14.3□□□□□ -0.12
SHMT2-201ENST00000328923 IDI1Q13907 227 aa14.3□□□□□ -0.12
SHMT2-201ENST00000328923 C10orf67Q8IYJ2 551 aa14.3□□□□□ -0.12
SHMT2-201ENST00000328923 C14orf93Q9H972 538 aaKnown RBP14.3□□□□□ -0.12
SHMT2-201ENST00000328923 USP25Q9UHP3 1055 aa14.3□□□□□ -0.12
SHMT2-201ENST00000328923 PYCARDQ9ULZ3 195 aa14.3□□□□□ -0.12
SHMT2-201ENST00000328923 GUCY2CP25092 1073 aa14.3□□□□□ -0.12
SHMT2-201ENST00000328923 TSPY26PQ9H489 355 aa14.3□□□□□ -0.12
SHMT2-201ENST00000328923 SBNO2Q9Y2G9 1366 aa14.3□□□□□ -0.12
SHMT2-201ENST00000328923 ADGRB2O60241 1585 aa14.29□□□□□ -0.12
SHMT2-201ENST00000328923 ADGRB1O14514 1584 aa14.29□□□□□ -0.12
SHMT2-201ENST00000328923 SYCP1Q15431 976 aa14.29□□□□□ -0.12
SHMT2-201ENST00000328923 ZKSCAN2Q63HK3 967 aa14.29□□□□□ -0.12
SHMT2-201ENST00000328923 KIAA1524Q8TCG1 905 aa14.29□□□□□ -0.12
SHMT2-201ENST00000328923 POLKQ9UBT6 870 aa14.29□□□□□ -0.12
SHMT2-201ENST00000328923 MYO5BQ9ULV0 1848 aa14.28□□□□□ -0.12
SHMT2-201ENST00000328923 CTR9Q6PD62 1173 aa14.28□□□□□ -0.12
SHMT2-201ENST00000328923 SYT10Q6XYQ8 523 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms