RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 G2E3Q7L622 706 aa24.54■■□□□ 1.52
CRLF3-201ENST00000324238 PIK3R4Q99570 1358 aa24.54■■□□□ 1.52
CRLF3-201ENST00000324238 CLCN1P35523 988 aa24.53■■□□□ 1.52
CRLF3-201ENST00000324238 CEP85Q6P2H3 762 aa24.53■■□□□ 1.52
CRLF3-201ENST00000324238 USP26Q9BXU7 913 aa24.53■■□□□ 1.52
CRLF3-201ENST00000324238 CLTCQ00610 1675 aaKnown RBP24.53■■□□□ 1.52
CRLF3-201ENST00000324238 LTKP29376 864 aa24.53■■□□□ 1.52
CRLF3-201ENST00000324238 ANKRD26Q9UPS8 1709 aa24.51■■□□□ 1.51
CRLF3-201ENST00000324238 LMOD3Q0VAK6 560 aa24.51■■□□□ 1.51
CRLF3-201ENST00000324238 MSH6P52701 1360 aa24.51■■□□□ 1.51
CRLF3-201ENST00000324238 CAVIN1Q6NZI2 390 aaKnown RBP24.51■■□□□ 1.51
CRLF3-201ENST00000324238 RBM33Q96EV2 1170 aaKnown RBP24.51■■□□□ 1.51
CRLF3-201ENST00000324238 ROBO2Q9HCK4 1378 aa24.51■■□□□ 1.51
CRLF3-201ENST00000324238 ANKRD44Q8N8A2 993 aa24.51■■□□□ 1.51
CRLF3-201ENST00000324238 LTV1Q96GA3 475 aaPredicted RBP24.51■■□□□ 1.51
CRLF3-201ENST00000324238 KIF20BQ96Q89 1820 aa24.5■■□□□ 1.51
CRLF3-201ENST00000324238 EDC4Q6P2E9 1401 aaKnown RBP24.5■■□□□ 1.51
CRLF3-201ENST00000324238 FOXD4L6Q3SYB3 417 aaPredicted RBP24.49■■□□□ 1.51
CRLF3-201ENST00000324238 FOXD4L3Q6VB84 417 aaPredicted RBP24.49■■□□□ 1.51
CRLF3-201ENST00000324238 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.49■■□□□ 1.51
CRLF3-201ENST00000324238 EXOC6BQ9Y2D4 811 aa24.49■■□□□ 1.51
CRLF3-201ENST00000324238 RBM27Q9P2N5 1060 aaKnown RBP24.49■■□□□ 1.51
CRLF3-201ENST00000324238 INTS3Q68E01 1043 aaKnown RBP24.48■■□□□ 1.51
CRLF3-201ENST00000324238 TTC21BQ7Z4L5 1316 aa24.48■■□□□ 1.51
CRLF3-201ENST00000324238 CPSF1Q10570 1443 aaKnown RBP24.48■■□□□ 1.51
CRLF3-201ENST00000324238 GOLGA6L22H0YM25 854 aa24.47■■□□□ 1.51
CRLF3-201ENST00000324238 TPRNQ4KMQ1 711 aa24.47■■□□□ 1.51
CRLF3-201ENST00000324238 C14orf37Q86TY3 774 aa24.47■■□□□ 1.51
CRLF3-201ENST00000324238 KNDC1Q76NI1 1749 aa24.47■■□□□ 1.51
CRLF3-201ENST00000324238 RABEP1Q15276 862 aa24.46■■□□□ 1.51
CRLF3-201ENST00000324238 PRPF40AO75400 957 aaKnown RBP24.46■■□□□ 1.51
CRLF3-201ENST00000324238 NASPP49321 788 aaPredicted RBP24.46■■□□□ 1.51
CRLF3-201ENST00000324238 ZBTB7CA1YPR0 619 aa24.45■■□□□ 1.51
CRLF3-201ENST00000324238 SKOR2Q2VWA4 1001 aaPredicted RBP24.45■■□□□ 1.51
CRLF3-201ENST00000324238 ATP7BP35670 1465 aa24.45■■□□□ 1.5
CRLF3-201ENST00000324238 NGDNQ8NEJ9 315 aaKnown RBP24.45■■□□□ 1.5
CRLF3-201ENST00000324238 CHL1O00533 1208 aa24.45■■□□□ 1.5
CRLF3-201ENST00000324238 RTL1A6NKG5 1358 aa24.44■■□□□ 1.5
CRLF3-201ENST00000324238 ATP10DQ9P241 1426 aa24.43■■□□□ 1.5
CRLF3-201ENST00000324238 DLG5Q8TDM6 1919 aa24.43■■□□□ 1.5
CRLF3-201ENST00000324238 CDC42BPGQ6DT37 1551 aa24.43■■□□□ 1.5
CRLF3-201ENST00000324238 HDGFP51858 240 aaKnown RBP24.42■■□□□ 1.5
CRLF3-201ENST00000324238 RGS12O14924 1447 aa24.41■■□□□ 1.5
CRLF3-201ENST00000324238 AMPHP49418 695 aa24.41■■□□□ 1.5
CRLF3-201ENST00000324238 RPAP2Q8IXW5 612 aaPredicted RBP24.41■■□□□ 1.5
CRLF3-201ENST00000324238 TSPYL4Q9UJ04 414 aa24.41■■□□□ 1.5
CRLF3-201ENST00000324238 CDK12Q9NYV4 1490 aaPredicted RBP24.41■■□□□ 1.5
CRLF3-201ENST00000324238 MTHFSDQ2M296 383 aaKnown RBP24.4■■□□□ 1.5
CRLF3-201ENST00000324238 NSFL1CQ9UNZ2 370 aaKnown RBP24.4■■□□□ 1.5
CRLF3-201ENST00000324238 KLHL40Q2TBA0 621 aa24.4■■□□□ 1.5
CRLF3-201ENST00000324238 ZDHHC9Q9Y397 364 aa24.4■■□□□ 1.5
CRLF3-201ENST00000324238 DTNBO60941 627 aa24.39■■□□□ 1.5
CRLF3-201ENST00000324238 NEK4P51957 841 aa24.39■■□□□ 1.5
CRLF3-201ENST00000324238 LMBRD1Q9NUN5 540 aa24.39■■□□□ 1.5
CRLF3-201ENST00000324238 AMOTL2Q9Y2J4 779 aa24.39■■□□□ 1.49
CRLF3-201ENST00000324238 TNRQ92752 1358 aa24.39■■□□□ 1.49
CRLF3-201ENST00000324238 RTF1Q92541 710 aaKnown RBP24.39■■□□□ 1.49
CRLF3-201ENST00000324238 RILPL2Q969X0 211 aa24.38■■□□□ 1.49
CRLF3-201ENST00000324238 MAP3K19Q56UN5 1328 aa24.38■■□□□ 1.49
CRLF3-201ENST00000324238 ZSCAN23Q3MJ62 389 aa24.37■■□□□ 1.49
CRLF3-201ENST00000324238 PPP6R1Q9UPN7 881 aa24.37■■□□□ 1.49
CRLF3-201ENST00000324238 AATKQ6ZMQ8 1374 aa24.37■■□□□ 1.49
CRLF3-201ENST00000324238 CASC1Q6TDU7 716 aa24.37■■□□□ 1.49
CRLF3-201ENST00000324238 USHBP1Q8N6Y0 703 aa24.37■■□□□ 1.49
CRLF3-201ENST00000324238 RBSNQ9H1K0 784 aa24.36■■□□□ 1.49
CRLF3-201ENST00000324238 PALD1Q9ULE6 856 aa24.36■■□□□ 1.49
CRLF3-201ENST00000324238 TRIM6-TRIM34B2RNG4 842 aa24.36■■□□□ 1.49
CRLF3-201ENST00000324238 ST18O60284 1047 aa24.36■■□□□ 1.49
CRLF3-201ENST00000324238 PRIM1P49642 420 aaKnown RBP24.36■■□□□ 1.49
CRLF3-201ENST00000324238 PDE1AP54750 535 aa24.36■■□□□ 1.49
CRLF3-201ENST00000324238 GPT2Q8TD30 523 aa24.36■■□□□ 1.49
CRLF3-201ENST00000324238 NLRP6P59044 892 aa24.35■■□□□ 1.49
CRLF3-201ENST00000324238 MAP4K4O95819 1239 aaPredicted RBP24.35■■□□□ 1.49
CRLF3-201ENST00000324238 PNMA6EA0A0J9YXQ4 647 aa24.34■■□□□ 1.49
CRLF3-201ENST00000324238 ERC2O15083 957 aa24.34■■□□□ 1.49
CRLF3-201ENST00000324238 NUCB2P80303 420 aa24.34■■□□□ 1.49
CRLF3-201ENST00000324238 TMEM2Q9UHN6 1383 aa24.34■■□□□ 1.49
CRLF3-201ENST00000324238 UPF3BQ9BZI7 483 aaKnown RBP24.34■■□□□ 1.49
CRLF3-201ENST00000324238 DIP2BQ9P265 1576 aa24.34■■□□□ 1.49
CRLF3-201ENST00000324238 RNF214Q8ND24 703 aa24.33■■□□□ 1.49
CRLF3-201ENST00000324238 ISY1Q9ULR0 285 aaKnown RBP24.33■■□□□ 1.49
CRLF3-201ENST00000324238 FKBP5Q13451 457 aaPredicted RBP24.33■■□□□ 1.48
CRLF3-201ENST00000324238 UBE2Q2Q8WVN8 375 aa24.33■■□□□ 1.48
CRLF3-201ENST00000324238 LARP6Q9BRS8 491 aaKnown RBP24.33■■□□□ 1.48
CRLF3-201ENST00000324238 IL1RAPL2Q9NP60 686 aa24.33■■□□□ 1.48
CRLF3-201ENST00000324238 CYP2E1P05181 493 aaPredicted RBP24.32■■□□□ 1.48
CRLF3-201ENST00000324238 EYA1Q99502 592 aa24.32■■□□□ 1.48
CRLF3-201ENST00000324238 ANO2Q9NQ90 1003 aa24.32■■□□□ 1.48
CRLF3-201ENST00000324238 REC8O95072 547 aa24.31■■□□□ 1.48
CRLF3-201ENST00000324238 UNC5CLQ8IV45 518 aa24.31■■□□□ 1.48
CRLF3-201ENST00000324238 GDPD2Q9HCC8 539 aa24.31■■□□□ 1.48
CRLF3-201ENST00000324238 SYCE3A1L190 88 aa24.31■■□□□ 1.48
CRLF3-201ENST00000324238 MPNDQ8N594 471 aa24.31■■□□□ 1.48
CRLF3-201ENST00000324238 ANP32BQ92688 251 aaKnown RBP24.31■■□□□ 1.48
CRLF3-201ENST00000324238 RIMBP3CA6NJZ7 1639 aa24.31■■□□□ 1.48
CRLF3-201ENST00000324238 RIMBP3BA6NNM3 1639 aa24.31■■□□□ 1.48
CRLF3-201ENST00000324238 RIMBP3Q9UFD9 1639 aa24.31■■□□□ 1.48
CRLF3-201ENST00000324238 TMX3Q96JJ7 454 aa24.3■■□□□ 1.48
CRLF3-201ENST00000324238 SPATA31D1Q6ZQQ2 1576 aa24.3■■□□□ 1.48
CRLF3-201ENST00000324238 EID1Q9Y6B2 187 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms