RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 C16orf71Q8IYS4 520 aaPredicted RBP23.57■■□□□ 1.36
RTN4-201ENST00000317610 DDX49Q9Y6V7 483 aaKnown RBP23.57■■□□□ 1.36
RTN4-201ENST00000317610 KIAA0232Q92628 1395 aa23.57■■□□□ 1.36
RTN4-201ENST00000317610 ZNF445P59923 1031 aa23.56■■□□□ 1.36
RTN4-201ENST00000317610 DCTN1Q14203 1278 aa23.56■■□□□ 1.36
RTN4-201ENST00000317610 RTL1A6NKG5 1358 aa23.55■■□□□ 1.36
RTN4-201ENST00000317610 NASPP49321 788 aaPredicted RBP23.55■■□□□ 1.36
RTN4-201ENST00000317610 RRS1Q15050 365 aaKnown RBP23.55■■□□□ 1.36
RTN4-201ENST00000317610 CWC22Q9HCG8 908 aaKnown RBP23.55■■□□□ 1.36
RTN4-201ENST00000317610 PPP6R1Q9UPN7 881 aa23.55■■□□□ 1.36
RTN4-201ENST00000317610 AGLP35573 1532 aa23.55■■□□□ 1.36
RTN4-201ENST00000317610 CHL1O00533 1208 aa23.54■■□□□ 1.36
RTN4-201ENST00000317610 PTPRCP08575 1304 aa23.54■■□□□ 1.36
RTN4-201ENST00000317610 SDSP20132 328 aa23.54■■□□□ 1.36
RTN4-201ENST00000317610 OTUD7AQ8TE49 926 aaPredicted RBP23.54■■□□□ 1.36
RTN4-201ENST00000317610 NUDT16Q96DE0 195 aaKnown RBP23.54■■□□□ 1.36
RTN4-201ENST00000317610 MSH6P52701 1360 aa23.53■■□□□ 1.36
RTN4-201ENST00000317610 LMBRD1Q9NUN5 540 aa23.53■■□□□ 1.36
RTN4-201ENST00000317610 CASC1Q6TDU7 716 aa23.52■■□□□ 1.36
RTN4-201ENST00000317610 CCDC61Q9Y6R9 512 aa23.52■■□□□ 1.36
RTN4-201ENST00000317610 TECPR2O15040 1411 aa23.52■■□□□ 1.36
RTN4-201ENST00000317610 SIRT1Q96EB6 747 aa23.51■■□□□ 1.35
RTN4-201ENST00000317610 MCTP1Q6DN14 999 aa23.5■■□□□ 1.35
RTN4-201ENST00000317610 ST18O60284 1047 aa23.5■■□□□ 1.35
RTN4-201ENST00000317610 METP08581 1390 aa23.5■■□□□ 1.35
RTN4-201ENST00000317610 RGPD1P0DJD0 1748 aa23.5■■□□□ 1.35
RTN4-201ENST00000317610 REC8O95072 547 aa23.48■■□□□ 1.35
RTN4-201ENST00000317610 EIF4A2Q14240 407 aaKnown RBP23.48■■□□□ 1.35
RTN4-201ENST00000317610 KRT24Q2M2I5 525 aa23.48■■□□□ 1.35
RTN4-201ENST00000317610 RRP9O43818 475 aaKnown RBP23.48■■□□□ 1.35
RTN4-201ENST00000317610 ZSCAN30Q86W11 494 aa23.48■■□□□ 1.35
RTN4-201ENST00000317610 AEBP1Q8IUX7 1158 aa23.48■■□□□ 1.35
RTN4-201ENST00000317610 ANP32BQ92688 251 aaKnown RBP23.48■■□□□ 1.35
RTN4-201ENST00000317610 OSBPL3Q9H4L5 887 aa23.48■■□□□ 1.35
RTN4-201ENST00000317610 PKP1Q13835 747 aa23.47■■□□□ 1.35
RTN4-201ENST00000317610 MEIS3Q99687 375 aa23.47■■□□□ 1.35
RTN4-201ENST00000317610 SMARCA5O60264 1052 aaPredicted RBP23.47■■□□□ 1.35
RTN4-201ENST00000317610 ZSCAN23Q3MJ62 389 aa23.47■■□□□ 1.35
RTN4-201ENST00000317610 SULT6B1Q6IMI4 303 aa23.46■■□□□ 1.35
RTN4-201ENST00000317610 CRB1P82279 1406 aa23.46■■□□□ 1.35
RTN4-201ENST00000317610 NCKAP5LQ9HCH0 1330 aa23.46■■□□□ 1.35
RTN4-201ENST00000317610 TUBGCP6Q96RT7 1819 aa23.45■■□□□ 1.34
RTN4-201ENST00000317610 ERC2O15083 957 aa23.45■■□□□ 1.34
RTN4-201ENST00000317610 NALCNQ8IZF0 1738 aa23.45■■□□□ 1.34
RTN4-201ENST00000317610 TPM2P07951 284 aa23.44■■□□□ 1.34
RTN4-201ENST00000317610 HS1BP3Q53T59 392 aa23.44■■□□□ 1.34
RTN4-201ENST00000317610 CAVIN1Q6NZI2 390 aaKnown RBP23.44■■□□□ 1.34
RTN4-201ENST00000317610 ZDHHC9Q9Y397 364 aa23.44■■□□□ 1.34
RTN4-201ENST00000317610 TXNDC2Q86VQ3 553 aa23.44■■□□□ 1.34
RTN4-201ENST00000317610 ZGPATQ8N5A5 531 aaKnown RBP23.44■■□□□ 1.34
RTN4-201ENST00000317610 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.44■■□□□ 1.34
RTN4-201ENST00000317610 OVOS2A0A0J9YW53 1432 aa23.43■■□□□ 1.34
RTN4-201ENST00000317610 OVOS2Q6IE36 1432 aa23.43■■□□□ 1.34
RTN4-201ENST00000317610 HMMRO75330 724 aa23.43■■□□□ 1.34
RTN4-201ENST00000317610 PEAK1Q9H792 1746 aa23.43■■□□□ 1.34
RTN4-201ENST00000317610 PRR36Q9H6K5 1346 aa23.43■■□□□ 1.34
RTN4-201ENST00000317610 MCM10Q7L590 875 aa23.42■■□□□ 1.34
RTN4-201ENST00000317610 TOPAZ1Q8N9V7 1692 aa23.41■■□□□ 1.34
RTN4-201ENST00000317610 PDLIM2Q96JY6 352 aa23.41■■□□□ 1.34
RTN4-201ENST00000317610 HSP90AA2PQ14568 343 aaPredicted RBP23.41■■□□□ 1.34
RTN4-201ENST00000317610 PDE1AP54750 535 aa23.4■■□□□ 1.34
RTN4-201ENST00000317610 GPT2Q8TD30 523 aa23.4■■□□□ 1.34
RTN4-201ENST00000317610 RBSNQ9H1K0 784 aa23.39■■□□□ 1.34
RTN4-201ENST00000317610 SLC4A2P04920 1241 aa23.39■■□□□ 1.33
RTN4-201ENST00000317610 TTC21BQ7Z4L5 1316 aa23.39■■□□□ 1.33
RTN4-201ENST00000317610 APBB1O00213 710 aa23.38■■□□□ 1.33
RTN4-201ENST00000317610 PRPF40AO75400 957 aaKnown RBP23.38■■□□□ 1.33
RTN4-201ENST00000317610 OFD1O75665 1012 aa23.38■■□□□ 1.33
RTN4-201ENST00000317610 NCLP19338 710 aaKnown RBP23.38■■□□□ 1.33
RTN4-201ENST00000317610 CCT4P50991 539 aaKnown RBP23.38■■□□□ 1.33
RTN4-201ENST00000317610 SALL3Q9BXA9 1300 aa23.38■■□□□ 1.33
RTN4-201ENST00000317610 PRIM1P49642 420 aaKnown RBP23.37■■□□□ 1.33
RTN4-201ENST00000317610 USP31Q70CQ4 1352 aa23.37■■□□□ 1.33
RTN4-201ENST00000317610 MCM2P49736 904 aa23.36■■□□□ 1.33
RTN4-201ENST00000317610 GLIPR1L2Q4G1C9 344 aa23.36■■□□□ 1.33
RTN4-201ENST00000317610 ARHGEF10O15013 1369 aa23.36■■□□□ 1.33
RTN4-201ENST00000317610 MSNP26038 577 aaKnown RBP23.35■■□□□ 1.33
RTN4-201ENST00000317610 TERF1P54274 439 aa23.34■■□□□ 1.33
RTN4-201ENST00000317610 IL17RAQ96F46 866 aa23.34■■□□□ 1.33
RTN4-201ENST00000317610 NOL7Q9UMY1 257 aaKnown RBP23.34■■□□□ 1.33
RTN4-201ENST00000317610 FMN2Q9NZ56 1722 aa23.33■■□□□ 1.33
RTN4-201ENST00000317610 CUL4AQ13619 759 aa23.33■■□□□ 1.33
RTN4-201ENST00000317610 LRSAM1Q6UWE0 723 aa23.33■■□□□ 1.33
RTN4-201ENST00000317610 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.33■■□□□ 1.33
RTN4-201ENST00000317610 KIAA1211Q6ZU35 1233 aa23.33■■□□□ 1.33
RTN4-201ENST00000317610 G2E3Q7L622 706 aa23.33■■□□□ 1.33
RTN4-201ENST00000317610 TMX3Q96JJ7 454 aa23.33■■□□□ 1.33
RTN4-201ENST00000317610 ESYT1Q9BSJ8 1104 aa23.33■■□□□ 1.33
RTN4-201ENST00000317610 RBM27Q9P2N5 1060 aaKnown RBP23.33■■□□□ 1.33
RTN4-201ENST00000317610 PLEKHG3A1L390 1219 aa23.32■■□□□ 1.32
RTN4-201ENST00000317610 HSP90AB2PQ58FF8 381 aa23.32■■□□□ 1.32
RTN4-201ENST00000317610 TMEM63CQ9P1W3 806 aa23.32■■□□□ 1.32
RTN4-201ENST00000317610 USP6P35125 1406 aa23.32■■□□□ 1.32
RTN4-201ENST00000317610 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.32■■□□□ 1.32
RTN4-201ENST00000317610 GNAI2P04899 355 aa23.32■■□□□ 1.32
RTN4-201ENST00000317610 ZNF500O60304 480 aaPredicted RBP23.31■■□□□ 1.32
RTN4-201ENST00000317610 BRD1O95696 1058 aa23.31■■□□□ 1.32
RTN4-201ENST00000317610 MBD3O95983 291 aa23.31■■□□□ 1.32
RTN4-201ENST00000317610 NEK4P51957 841 aa23.31■■□□□ 1.32
RTN4-201ENST00000317610 ANAPC15P60006 121 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms