RNA–Protein interactions for RNA: ENST00000307106.3

SMIM4-201, Transcript of small integral membrane protein 4, humanhuman

TSL 2 BASIC

Gene SMIM4, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM4-201ENST00000307106 COL23A1Q86Y22 540 aaPredicted RBP17.05■□□□□ 0.32
SMIM4-201ENST00000307106 NSD2O96028 1365 aa17.04■□□□□ 0.32
SMIM4-201ENST00000307106 PRIM1P49642 420 aaKnown RBP17.04■□□□□ 0.32
SMIM4-201ENST00000307106 MSL1Q68DK7 614 aa17.04■□□□□ 0.32
SMIM4-201ENST00000307106 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.04■□□□□ 0.32
SMIM4-201ENST00000307106 CCNL1Q9UK58 526 aaPredicted RBP17.04■□□□□ 0.32
SMIM4-201ENST00000307106 CD2APQ9Y5K6 639 aa17.03■□□□□ 0.32
SMIM4-201ENST00000307106 UBR3Q6ZT12 1888 aa17.02■□□□□ 0.32
SMIM4-201ENST00000307106 NME9Q86XW9 330 aa17.02■□□□□ 0.32
SMIM4-201ENST00000307106 ITGB4P16144 1822 aa17■□□□□ 0.31
SMIM4-201ENST00000307106 WDR90Q96KV7 1748 aa17■□□□□ 0.31
SMIM4-201ENST00000307106 CD163L1Q9NR16 1453 aa16.99■□□□□ 0.31
SMIM4-201ENST00000307106 TOGARAM1Q9Y4F4 1720 aa16.99■□□□□ 0.31
SMIM4-201ENST00000307106 USP47Q96K76 1375 aa16.99■□□□□ 0.31
SMIM4-201ENST00000307106 SBNO2Q9Y2G9 1366 aa16.99■□□□□ 0.31
SMIM4-201ENST00000307106 KIF3CO14782 793 aa16.98■□□□□ 0.31
SMIM4-201ENST00000307106 LTV1Q96GA3 475 aaPredicted RBP16.98■□□□□ 0.31
SMIM4-201ENST00000307106 C4BP0C0L5 1744 aa16.98■□□□□ 0.31
SMIM4-201ENST00000307106 CICQ96RK0 1608 aaPredicted RBP16.96■□□□□ 0.31
SMIM4-201ENST00000307106 APLP1P51693 650 aa16.96■□□□□ 0.31
SMIM4-201ENST00000307106 MEGF6O75095 1541 aa16.96■□□□□ 0.3
SMIM4-201ENST00000307106 IGSF1Q8N6C5 1336 aa16.96■□□□□ 0.3
SMIM4-201ENST00000307106 N4BP2Q86UW6 1770 aaPredicted RBP16.95■□□□□ 0.3
SMIM4-201ENST00000307106 IP6K1Q92551 441 aa16.95■□□□□ 0.3
SMIM4-201ENST00000307106 WWC3Q9ULE0 1092 aa16.95■□□□□ 0.3
SMIM4-201ENST00000307106 KIF13BQ9NQT8 1826 aa16.95■□□□□ 0.3
SMIM4-201ENST00000307106 ROCK2O75116 1388 aaKnown RBP16.94■□□□□ 0.3
SMIM4-201ENST00000307106 FLAD1Q8NFF5 587 aa16.94■□□□□ 0.3
SMIM4-201ENST00000307106 ZCRB1Q8TBF4 217 aaKnown RBP16.94■□□□□ 0.3
SMIM4-201ENST00000307106 EDC4Q6P2E9 1401 aaKnown RBP16.94■□□□□ 0.3
SMIM4-201ENST00000307106 KIAA1551Q9HCM1 1747 aa16.93■□□□□ 0.3
SMIM4-201ENST00000307106 HDGFL2Q7Z4V5 671 aaPredicted RBP16.92■□□□□ 0.3
SMIM4-201ENST00000307106 DNAJC5GQ8N7S2 189 aa16.92■□□□□ 0.3
SMIM4-201ENST00000307106 TMC1Q8TDI8 760 aa16.91■□□□□ 0.3
SMIM4-201ENST00000307106 L3MBTL2Q969R5 705 aa16.91■□□□□ 0.3
SMIM4-201ENST00000307106 BRCA1P38398 1863 aaKnown RBP16.9■□□□□ 0.3
SMIM4-201ENST00000307106 HMGB2P26583 209 aaKnown RBP16.9■□□□□ 0.3
SMIM4-201ENST00000307106 MAP2P11137 1827 aaKnown RBP16.9■□□□□ 0.3
SMIM4-201ENST00000307106 TOMM70O94826 608 aa16.89■□□□□ 0.29
SMIM4-201ENST00000307106 PALLDQ8WX93 1383 aa16.89■□□□□ 0.29
SMIM4-201ENST00000307106 HOXC9P31274 260 aa16.88■□□□□ 0.29
SMIM4-201ENST00000307106 SLC12A5Q9H2X9 1139 aa16.88■□□□□ 0.29
SMIM4-201ENST00000307106 A0A1W2PP64 1363 aa16.88■□□□□ 0.29
SMIM4-201ENST00000307106 AK7Q96M32 723 aa16.87■□□□□ 0.29
SMIM4-201ENST00000307106 MAP3K19Q56UN5 1328 aa16.87■□□□□ 0.29
SMIM4-201ENST00000307106 PKD1L3Q7Z443 1732 aa16.87■□□□□ 0.29
SMIM4-201ENST00000307106 ARFGEF1Q9Y6D6 1849 aa16.86■□□□□ 0.29
SMIM4-201ENST00000307106 AMPHP49418 695 aa16.86■□□□□ 0.29
SMIM4-201ENST00000307106 AMIGO3Q86WK7 504 aa16.86■□□□□ 0.29
SMIM4-201ENST00000307106 NSD3Q9BZ95 1437 aa16.86■□□□□ 0.29
SMIM4-201ENST00000307106 PHF14O94880 888 aa16.85■□□□□ 0.29
SMIM4-201ENST00000307106 COL13A1Q5TAT6 717 aaPredicted RBP16.85■□□□□ 0.29
SMIM4-201ENST00000307106 TERF2IPQ9NYB0 399 aa16.85■□□□□ 0.29
SMIM4-201ENST00000307106 CGNL1Q0VF96 1302 aa16.85■□□□□ 0.29
SMIM4-201ENST00000307106 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.84■□□□□ 0.29
SMIM4-201ENST00000307106 CAPN15O75808 1086 aa16.84■□□□□ 0.29
SMIM4-201ENST00000307106 MPRIPQ6WCQ1 1025 aa16.84■□□□□ 0.29
SMIM4-201ENST00000307106 SMIM5Q71RC9 77 aa16.83■□□□□ 0.28
SMIM4-201ENST00000307106 RAPGEF4Q8WZA2 1011 aa16.83■□□□□ 0.28
SMIM4-201ENST00000307106 SBF1O95248 1867 aa16.82■□□□□ 0.28
SMIM4-201ENST00000307106 PXDNLA1KZ92 1463 aa16.82■□□□□ 0.28
SMIM4-201ENST00000307106 PCDH11XQ9BZA7 1347 aa16.82■□□□□ 0.28
SMIM4-201ENST00000307106 PCDH11YQ9BZA8 1340 aa16.82■□□□□ 0.28
SMIM4-201ENST00000307106 FBLN1P23142 703 aa16.82■□□□□ 0.28
SMIM4-201ENST00000307106 NBPF6Q5VWK0 638 aa16.82■□□□□ 0.28
SMIM4-201ENST00000307106 USHBP1Q8N6Y0 703 aa16.82■□□□□ 0.28
SMIM4-201ENST00000307106 COG3Q96JB2 828 aa16.82■□□□□ 0.28
SMIM4-201ENST00000307106 NBPF4Q96M43 638 aa16.82■□□□□ 0.28
SMIM4-201ENST00000307106 NMRK2Q9NPI5 230 aa16.82■□□□□ 0.28
SMIM4-201ENST00000307106 RTL1A6NKG5 1358 aa16.81■□□□□ 0.28
SMIM4-201ENST00000307106 KLRG1Q96E93 195 aa16.81■□□□□ 0.28
SMIM4-201ENST00000307106 TNRC6CQ9HCJ0 1690 aaKnown RBP16.81■□□□□ 0.28
SMIM4-201ENST00000307106 SMG6Q86US8 1419 aaKnown RBP16.8■□□□□ 0.28
SMIM4-201ENST00000307106 TATP17735 454 aaPredicted RBP16.8■□□□□ 0.28
SMIM4-201ENST00000307106 SSFA2P28290 1259 aa16.8■□□□□ 0.28
SMIM4-201ENST00000307106 HTRA3P83110 453 aa16.8■□□□□ 0.28
SMIM4-201ENST00000307106 JMYQ8N9B5 988 aa16.8■□□□□ 0.28
SMIM4-201ENST00000307106 SMARCC1Q92922 1105 aaPredicted RBP16.8■□□□□ 0.28
SMIM4-201ENST00000307106 PCNTO95613 3336 aa16.8■□□□□ 0.28
SMIM4-201ENST00000307106 KIF20BQ96Q89 1820 aa16.8■□□□□ 0.28
SMIM4-201ENST00000307106 RBM46Q8TBY0 533 aaKnown RBP16.79■□□□□ 0.28
SMIM4-201ENST00000307106 BCS1LQ9Y276 419 aa16.79■□□□□ 0.28
SMIM4-201ENST00000307106 TNS4Q8IZW8 715 aa16.78■□□□□ 0.28
SMIM4-201ENST00000307106 C4AP0C0L4 1744 aa16.78■□□□□ 0.28
SMIM4-201ENST00000307106 ARHGAP27Q6ZUM4 889 aa16.77■□□□□ 0.28
SMIM4-201ENST00000307106 C16orf71Q8IYS4 520 aaPredicted RBP16.77■□□□□ 0.28
SMIM4-201ENST00000307106 MMP10P09238 476 aa16.76■□□□□ 0.27
SMIM4-201ENST00000307106 PRELPP51888 382 aa16.76■□□□□ 0.27
SMIM4-201ENST00000307106 RRS1Q15050 365 aaKnown RBP16.76■□□□□ 0.27
SMIM4-201ENST00000307106 LINC00116Q8NCU8 138 aa16.76■□□□□ 0.27
SMIM4-201ENST00000307106 SIN3AQ96ST3 1273 aa16.76■□□□□ 0.27
SMIM4-201ENST00000307106 CYP27B1O15528 508 aa16.75■□□□□ 0.27
SMIM4-201ENST00000307106 TGFB2P61812 414 aa16.75■□□□□ 0.27
SMIM4-201ENST00000307106 CARD11Q9BXL7 1154 aa16.75■□□□□ 0.27
SMIM4-201ENST00000307106 COL5A3P25940 1745 aaPredicted RBP16.75■□□□□ 0.27
SMIM4-201ENST00000307106 CCDC88AQ3V6T2 1871 aa16.75■□□□□ 0.27
SMIM4-201ENST00000307106 PLEKHG2Q9H7P9 1386 aa16.75■□□□□ 0.27
SMIM4-201ENST00000307106 C10orf71Q711Q0 1435 aa16.74■□□□□ 0.27
SMIM4-201ENST00000307106 LOC102724428A0A0B4J2F2 783 aa16.74■□□□□ 0.27
SMIM4-201ENST00000307106 A0A0G2JLW4 131 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms