RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 TNIP1Q15025 636 aa14.12□□□□□ -0.15
PCF11-201ENST00000298281 CCDC192P0DO97 292 aa14.12□□□□□ -0.15
PCF11-201ENST00000298281 PANK1Q8TE04 598 aa14.12□□□□□ -0.15
PCF11-201ENST00000298281 SLU7O95391 586 aaKnown RBP14.11□□□□□ -0.15
PCF11-201ENST00000298281 TRAK2O60296 914 aa14.11□□□□□ -0.15
PCF11-201ENST00000298281 CTNNA2P26232 953 aa14.11□□□□□ -0.15
PCF11-201ENST00000298281 ANKRD50Q9ULJ7 1429 aa14.11□□□□□ -0.15
PCF11-201ENST00000298281 FAM69CQ0P6D2 419 aa14.11□□□□□ -0.15
PCF11-201ENST00000298281 NOL7Q9UMY1 257 aaKnown RBP14.11□□□□□ -0.15
PCF11-201ENST00000298281 APBB1IPQ7Z5R6 666 aaPredicted RBP14.11□□□□□ -0.15
PCF11-201ENST00000298281 ZNF692Q9BU19 519 aaPredicted RBP14.11□□□□□ -0.15
PCF11-201ENST00000298281 GAPVD1Q14C86 1478 aa14.11□□□□□ -0.15
PCF11-201ENST00000298281 MACROD2A1Z1Q3 448 aa14.1□□□□□ -0.15
PCF11-201ENST00000298281 CCDC69A6NI79 296 aa14.1□□□□□ -0.15
PCF11-201ENST00000298281 PIBF1Q8WXW3 757 aa14.1□□□□□ -0.15
PCF11-201ENST00000298281 FGD6Q6ZV73 1430 aa14.1□□□□□ -0.15
PCF11-201ENST00000298281 USP8P40818 1118 aa14.1□□□□□ -0.15
PCF11-201ENST00000298281 WDR33Q9C0J8 1336 aaKnown RBP14.1□□□□□ -0.15
PCF11-201ENST00000298281 CBFA2T2O43439 604 aa14.1□□□□□ -0.15
PCF11-201ENST00000298281 LMAN1P49257 510 aa14.1□□□□□ -0.15
PCF11-201ENST00000298281 TSNARE1Q96NA8 513 aa14.1□□□□□ -0.15
PCF11-201ENST00000298281 TCP11L2Q8N4U5 519 aa14.1□□□□□ -0.15
PCF11-201ENST00000298281 UQCRHP07919 91 aa14.1□□□□□ -0.15
PCF11-201ENST00000298281 RBM42Q9BTD8 480 aaKnown RBP14.1□□□□□ -0.15
PCF11-201ENST00000298281 GRM1Q13255 1194 aa14.09□□□□□ -0.15
PCF11-201ENST00000298281 KRT85P78386 507 aa14.09□□□□□ -0.15
PCF11-201ENST00000298281 TWISTNBQ3B726 338 aaPredicted RBP14.09□□□□□ -0.15
PCF11-201ENST00000298281 LARP1Q6PKG0 1096 aaKnown RBP14.09□□□□□ -0.15
PCF11-201ENST00000298281 NUP133Q8WUM0 1156 aa14.09□□□□□ -0.15
PCF11-201ENST00000298281 CTNNA3Q9UI47 895 aa14.09□□□□□ -0.15
PCF11-201ENST00000298281 NUTM2BA6NNL0 878 aaPredicted RBP14.09□□□□□ -0.15
PCF11-201ENST00000298281 NUTM2EB1AL46 878 aaPredicted RBP14.09□□□□□ -0.15
PCF11-201ENST00000298281 NUTM2AQ8IVF1 878 aaPredicted RBP14.09□□□□□ -0.15
PCF11-201ENST00000298281 TAF4BQ92750 862 aa14.08□□□□□ -0.16
PCF11-201ENST00000298281 RFX1P22670 979 aa14.08□□□□□ -0.16
PCF11-201ENST00000298281 CCDC57Q2TAC2 916 aa14.08□□□□□ -0.16
PCF11-201ENST00000298281 DZIP1Q86YF9 867 aaKnown RBP14.08□□□□□ -0.16
PCF11-201ENST00000298281 VTI1AQ96AJ9 217 aa14.08□□□□□ -0.16
PCF11-201ENST00000298281 GTPBP4Q9BZE4 634 aaKnown RBP14.08□□□□□ -0.16
PCF11-201ENST00000298281 CABP2Q9NPB3 220 aa14.08□□□□□ -0.16
PCF11-201ENST00000298281 PPP1R12BO60237 982 aaPredicted RBP14.08□□□□□ -0.16
PCF11-201ENST00000298281 MAPK8IP2Q13387 824 aaPredicted RBP14.08□□□□□ -0.16
PCF11-201ENST00000298281 HDGFL1Q5TGJ6 251 aa14.08□□□□□ -0.16
PCF11-201ENST00000298281 RNF214Q8ND24 703 aa14.08□□□□□ -0.16
PCF11-201ENST00000298281 ZNF397Q8NF99 534 aaPredicted RBP14.07□□□□□ -0.16
PCF11-201ENST00000298281 KRT32Q14532 448 aa14.07□□□□□ -0.16
PCF11-201ENST00000298281 ATAD2BQ9ULI0 1458 aa14.07□□□□□ -0.16
PCF11-201ENST00000298281 RBM25P49756 843 aaKnown RBP14.07□□□□□ -0.16
PCF11-201ENST00000298281 ZNF428Q96B54 188 aa14.07□□□□□ -0.16
PCF11-201ENST00000298281 DAAM2Q86T65 1068 aa14.07□□□□□ -0.16
PCF11-201ENST00000298281 PPP1R9BQ96SB3 815 aa14.07□□□□□ -0.16
PCF11-201ENST00000298281 HFM1A2PYH4 1435 aa14.07□□□□□ -0.16
PCF11-201ENST00000298281 MPHOSPH8Q99549 860 aa14.06□□□□□ -0.16
PCF11-201ENST00000298281 STRN4Q9NRL3 753 aa14.06□□□□□ -0.16
PCF11-201ENST00000298281 SPG7Q9UQ90 795 aa14.06□□□□□ -0.16
PCF11-201ENST00000298281 PRKAR2BP31323 418 aa14.06□□□□□ -0.16
PCF11-201ENST00000298281 CCDC102AQ96A19 550 aa14.06□□□□□ -0.16
PCF11-201ENST00000298281 TTC36A6NLP5 189 aa14.06□□□□□ -0.16
PCF11-201ENST00000298281 FIBPO43427 364 aa14.06□□□□□ -0.16
PCF11-201ENST00000298281 LIG1P18858 919 aa14.06□□□□□ -0.16
PCF11-201ENST00000298281 WASF1Q92558 559 aa14.06□□□□□ -0.16
PCF11-201ENST00000298281 ME1P48163 572 aa14.05□□□□□ -0.16
PCF11-201ENST00000298281 TNMDQ9H2S6 317 aa14.05□□□□□ -0.16
PCF11-201ENST00000298281 ODF2LQ9ULJ1 636 aa14.05□□□□□ -0.16
PCF11-201ENST00000298281 TNNT1P13805 278 aa14.05□□□□□ -0.16
PCF11-201ENST00000298281 PSMC4P43686 418 aa14.05□□□□□ -0.16
PCF11-201ENST00000298281 ADAMTS8Q9UP79 889 aa14.05□□□□□ -0.16
PCF11-201ENST00000298281 PRPF40AO75400 957 aaKnown RBP14.05□□□□□ -0.16
PCF11-201ENST00000298281 IFFO1Q0D2I5 559 aa14.05□□□□□ -0.16
PCF11-201ENST00000298281 CCDC178Q5BJE1 867 aa14.05□□□□□ -0.16
PCF11-201ENST00000298281 OTUD6BQ8N6M0 293 aa14.05□□□□□ -0.16
PCF11-201ENST00000298281 SMARCA4P51532 1647 aa14.05□□□□□ -0.16
PCF11-201ENST00000298281 ESCO1Q5FWF5 840 aa14.05□□□□□ -0.16
PCF11-201ENST00000298281 ZSCAN31Q96LW9 406 aaPredicted RBP14.05□□□□□ -0.16
PCF11-201ENST00000298281 CABP4P57796 275 aa14.04□□□□□ -0.16
PCF11-201ENST00000298281 ZNF710Q8N1W2 664 aa14.04□□□□□ -0.16
PCF11-201ENST00000298281 THEMISQ8N1K5 641 aaPredicted RBP14.04□□□□□ -0.16
PCF11-201ENST00000298281 FERMT1Q9BQL6 677 aa14.04□□□□□ -0.16
PCF11-201ENST00000298281 TMOD2Q9NZR1 351 aa14.04□□□□□ -0.16
PCF11-201ENST00000298281 ARHGAP5Q13017 1502 aa14.04□□□□□ -0.16
PCF11-201ENST00000298281 ZNF287Q9HBT7 754 aa14.04□□□□□ -0.16
PCF11-201ENST00000298281 GCOM1H8Y6P7 765 aaPredicted RBP14.04□□□□□ -0.16
PCF11-201ENST00000298281 MYZAPP0CAP1 466 aa14.04□□□□□ -0.16
PCF11-201ENST00000298281 EIF5P55010 431 aaKnown RBP14.04□□□□□ -0.16
PCF11-201ENST00000298281 WDR63Q8IWG1 891 aa14.04□□□□□ -0.16
PCF11-201ENST00000298281 SATB1Q01826 763 aa14.03□□□□□ -0.16
PCF11-201ENST00000298281 CFAP58Q5T655 872 aa14.03□□□□□ -0.16
PCF11-201ENST00000298281 TXNDC2Q86VQ3 553 aa14.03□□□□□ -0.16
PCF11-201ENST00000298281 PROSER2Q86WR7 435 aaPredicted RBP14.03□□□□□ -0.16
PCF11-201ENST00000298281 UBA5Q9GZZ9 404 aa14.03□□□□□ -0.16
PCF11-201ENST00000298281 NUTM2GQ5VZR2 741 aa14.03□□□□□ -0.16
PCF11-201ENST00000298281 PRPF31Q8WWY3 499 aaKnown RBP14.03□□□□□ -0.16
PCF11-201ENST00000298281 BLOC1S2Q6QNY1 142 aa14.03□□□□□ -0.16
PCF11-201ENST00000298281 PPP1R14CQ8TAE6 165 aa14.03□□□□□ -0.16
PCF11-201ENST00000298281 CCDC160A6NGH7 325 aa14.02□□□□□ -0.16
PCF11-201ENST00000298281 SLC4A2P04920 1241 aa14.02□□□□□ -0.16
PCF11-201ENST00000298281 EXOSC9Q06265 439 aaKnown RBP14.02□□□□□ -0.16
PCF11-201ENST00000298281 UBAC1Q9BSL1 405 aa14.02□□□□□ -0.16
PCF11-201ENST00000298281 PLEKHH2Q8IVE3 1493 aa14.02□□□□□ -0.17
PCF11-201ENST00000298281 LRRC45Q96CN5 670 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms