RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 SHTN1A0MZ66 631 aa9.36□□□□□ -0.91
LIMD1-201ENST00000273317 ESPNB1AK53 854 aa9.36□□□□□ -0.91
LIMD1-201ENST00000273317 CHD1LQ86WJ1 897 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 SH2B1Q9NRF2 756 aaPredicted RBP9.35□□□□□ -0.91
LIMD1-201ENST00000273317 ABCC11Q96J66 1382 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 ANKRD30BQ9BXX2 1392 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 ATAD2Q6PL18 1390 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 MTHFSP49914 203 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 ARHGAP29Q52LW3 1261 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 CFTRP13569 1480 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 AEBP2Q6ZN18 517 aaPredicted RBP9.35□□□□□ -0.91
LIMD1-201ENST00000273317 CABP2Q9NPB3 220 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 SOGA3Q5TF21 947 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 PRKAR2BP31323 418 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 CENPHQ9H3R5 247 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 CGNQ9P2M7 1197 aaKnown RBP9.35□□□□□ -0.91
LIMD1-201ENST00000273317 NKTRP30414 1462 aaKnown RBP9.35□□□□□ -0.91
LIMD1-201ENST00000273317 MCM5P33992 734 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 CETN2P41208 172 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 CCDC183Q5T5S1 534 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 DHX29Q7Z478 1369 aaKnown RBP9.35□□□□□ -0.91
LIMD1-201ENST00000273317 ARAP1Q96P48 1450 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 BLOC1S2Q6QNY1 142 aa9.35□□□□□ -0.91
LIMD1-201ENST00000273317 SFPQP23246 707 aaKnown RBP eCLIP9.34□□□□□ -0.91
LIMD1-201ENST00000273317 VPS36Q86VN1 386 aa9.34□□□□□ -0.91
LIMD1-201ENST00000273317 FGFR1OPO95684 399 aaKnown RBP9.34□□□□□ -0.91
LIMD1-201ENST00000273317 MICALCLQ6ZW33 695 aa9.34□□□□□ -0.91
LIMD1-201ENST00000273317 PDCL3Q9H2J4 239 aa9.34□□□□□ -0.91
LIMD1-201ENST00000273317 CCDC83Q8IWF9 413 aa9.34□□□□□ -0.91
LIMD1-201ENST00000273317 ATF7IPQ6VMQ6 1270 aa9.34□□□□□ -0.91
LIMD1-201ENST00000273317 UBXN4Q92575 508 aa9.34□□□□□ -0.91
LIMD1-201ENST00000273317 CNNM1Q9NRU3 951 aa9.34□□□□□ -0.91
LIMD1-201ENST00000273317 CTAGE5O15320 804 aa9.34□□□□□ -0.91
LIMD1-201ENST00000273317 CRACR2AQ9BSW2 395 aa9.34□□□□□ -0.91
LIMD1-201ENST00000273317 CAVIN2O95810 425 aa9.34□□□□□ -0.92
LIMD1-201ENST00000273317 MCM4P33991 863 aa9.34□□□□□ -0.92
LIMD1-201ENST00000273317 GOLGA6L10A0A0M3HER8 536 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 CCDC102AQ96A19 550 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 UBAC1Q9BSL1 405 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 TANGO6Q9C0B7 1094 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 IGF1RP08069 1367 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 DYDC1Q8WWB3 177 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 CEBPZQ03701 1054 aaKnown RBP9.33□□□□□ -0.92
LIMD1-201ENST00000273317 SPA17Q15506 151 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 SCAND2PQ9GZW5 306 aaPredicted RBP9.33□□□□□ -0.92
LIMD1-201ENST00000273317 TMCO3Q6UWJ1 677 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 KIF18AQ8NI77 898 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 RPGRIP1LQ68CZ1 1315 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 KIF5CO60282 957 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 ATP2B1P20020 1258 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 HDGFL1Q5TGJ6 251 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 GIMAP7Q8NHV1 300 aa9.33□□□□□ -0.92
LIMD1-201ENST00000273317 EPRSP07814 1512 aaKnown RBP9.32□□□□□ -0.92
LIMD1-201ENST00000273317 PAF1Q8N7H5 531 aa9.32□□□□□ -0.92
LIMD1-201ENST00000273317 RAB11FIP3O75154 756 aa9.32□□□□□ -0.92
LIMD1-201ENST00000273317 FILIP1Q7Z7B0 1213 aa9.32□□□□□ -0.92
LIMD1-201ENST00000273317 EXOSC9Q06265 439 aaKnown RBP9.32□□□□□ -0.92
LIMD1-201ENST00000273317 AACSQ86V21 672 aa9.32□□□□□ -0.92
LIMD1-201ENST00000273317 RAD54L2Q9Y4B4 1467 aa9.32□□□□□ -0.92
LIMD1-201ENST00000273317 CALCOCO1Q9P1Z2 691 aa9.32□□□□□ -0.92
LIMD1-201ENST00000273317 GGNBP2Q9H3C7 697 aa9.32□□□□□ -0.92
LIMD1-201ENST00000273317 U3KPZ7 1027 aaPredicted RBP9.32□□□□□ -0.92
LIMD1-201ENST00000273317 CC2D2AQ9P2K1 1620 aa9.32□□□□□ -0.92
LIMD1-201ENST00000273317 TAX1BP1Q86VP1 789 aa9.32□□□□□ -0.92
LIMD1-201ENST00000273317 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.32□□□□□ -0.922e-6■■■■□ 19.8
LIMD1-201ENST00000273317 ANKRD62A6NC57 917 aa9.32□□□□□ -0.92
LIMD1-201ENST00000273317 EIF5P55010 431 aaKnown RBP9.32□□□□□ -0.92
LIMD1-201ENST00000273317 FAM193AP78312 1265 aa9.32□□□□□ -0.92
LIMD1-201ENST00000273317 LRRFIP2Q9Y608 721 aaKnown RBP9.32□□□□□ -0.92
LIMD1-201ENST00000273317 ZNF287Q9HBT7 754 aa9.32□□□□□ -0.92
LIMD1-201ENST00000273317 NLRP6P59044 892 aa9.31□□□□□ -0.92
LIMD1-201ENST00000273317 FEZ1Q99689 392 aa9.31□□□□□ -0.92
LIMD1-201ENST00000273317 EIF2AK4Q9P2K8 1649 aaKnown RBP9.31□□□□□ -0.92
LIMD1-201ENST00000273317 POLR3GO15318 223 aaPredicted RBP9.31□□□□□ -0.92
LIMD1-201ENST00000273317 CASQ1P31415 396 aa9.31□□□□□ -0.92
LIMD1-201ENST00000273317 IQGAP2Q13576 1575 aa9.31□□□□□ -0.92
LIMD1-201ENST00000273317 GOLGA6L9A6NEM1 432 aa9.31□□□□□ -0.92
LIMD1-201ENST00000273317 TSG101Q99816 390 aa9.31□□□□□ -0.92
LIMD1-201ENST00000273317 SPG7Q9UQ90 795 aa9.31□□□□□ -0.92
LIMD1-201ENST00000273317 TATP17735 454 aaPredicted RBP9.31□□□□□ -0.92
LIMD1-201ENST00000273317 GSDMDP57764 484 aa9.31□□□□□ -0.92
LIMD1-201ENST00000273317 ANO10Q9NW15 660 aa9.31□□□□□ -0.92
LIMD1-201ENST00000273317 DNMBPQ6XZF7 1577 aa9.31□□□□□ -0.92
LIMD1-201ENST00000273317 ABTB2Q8N961 1025 aa9.31□□□□□ -0.92
LIMD1-201ENST00000273317 SLC4A2P04920 1241 aa9.3□□□□□ -0.92
LIMD1-201ENST00000273317 FKBP15Q5T1M5 1219 aa9.3□□□□□ -0.92
LIMD1-201ENST00000273317 JAKMIP1Q96N16 626 aaKnown RBP9.3□□□□□ -0.92
LIMD1-201ENST00000273317 SEPT11Q9NVA2 429 aaKnown RBP9.3□□□□□ -0.92
LIMD1-201ENST00000273317 PCF11O94913 1555 aaKnown RBP9.3□□□□□ -0.92
LIMD1-201ENST00000273317 GCOM1H8Y6P7 765 aaPredicted RBP9.3□□□□□ -0.92
LIMD1-201ENST00000273317 MYZAPP0CAP1 466 aa9.3□□□□□ -0.92
LIMD1-201ENST00000273317 STAMBPO95630 424 aa9.3□□□□□ -0.92
LIMD1-201ENST00000273317 PTPN14Q15678 1187 aa9.3□□□□□ -0.92
LIMD1-201ENST00000273317 CASTP20810 708 aaKnown RBP9.3□□□□□ -0.92
LIMD1-201ENST00000273317 ALS2CR12Q96Q35 445 aa9.3□□□□□ -0.92
LIMD1-201ENST00000273317 ZNF692Q9BU19 519 aaPredicted RBP9.3□□□□□ -0.92
LIMD1-201ENST00000273317 SAMD1Q6SPF0 538 aaPredicted RBP9.3□□□□□ -0.92
LIMD1-201ENST00000273317 C1orf115Q9H7X2 142 aa9.3□□□□□ -0.92
LIMD1-201ENST00000273317 SEC63Q9UGP8 760 aaKnown RBP9.3□□□□□ -0.92
LIMD1-201ENST00000273317 TNIP1Q15025 636 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms