RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 IBTKQ9P2D0 1353 aaPredicted RBP17.51■□□□□ 0.39
SDC1-201ENST00000254351 TWISTNBQ3B726 338 aaPredicted RBP17.51■□□□□ 0.39
SDC1-201ENST00000254351 CLEC17AQ6ZS10 378 aa17.51■□□□□ 0.39
SDC1-201ENST00000254351 TMX3Q96JJ7 454 aa17.51■□□□□ 0.39
SDC1-201ENST00000254351 CHMP3Q9Y3E7 222 aa17.51■□□□□ 0.39
SDC1-201ENST00000254351 ABCC11Q96J66 1382 aa17.51■□□□□ 0.39
SDC1-201ENST00000254351 HCLS1P14317 486 aaPredicted RBP17.5■□□□□ 0.39
SDC1-201ENST00000254351 CASC1Q6TDU7 716 aa17.5■□□□□ 0.39
SDC1-201ENST00000254351 ZSCAN20P17040 1043 aaPredicted RBP17.5■□□□□ 0.39
SDC1-201ENST00000254351 MBIPQ9NS73 344 aa17.5■□□□□ 0.39
SDC1-201ENST00000254351 EVC2Q86UK5 1308 aa17.5■□□□□ 0.39
SDC1-201ENST00000254351 FYB1O15117 783 aa17.5■□□□□ 0.39
SDC1-201ENST00000254351 MAPK8IP2Q13387 824 aaPredicted RBP17.5■□□□□ 0.39
SDC1-201ENST00000254351 NOLC1Q14978 699 aaKnown RBP eCLIP17.5■□□□□ 0.397e-6■■■□□ 16.5
SDC1-201ENST00000254351 SLC4A10Q6U841 1118 aa17.49■□□□□ 0.39
SDC1-201ENST00000254351 RILPL2Q969X0 211 aa17.49■□□□□ 0.39
SDC1-201ENST00000254351 ADCY5O95622 1261 aa17.48■□□□□ 0.39
SDC1-201ENST00000254351 ALDH1L2Q3SY69 923 aa17.48■□□□□ 0.39
SDC1-201ENST00000254351 CWC22Q9HCG8 908 aaKnown RBP17.48■□□□□ 0.39
SDC1-201ENST00000254351 ANO2Q9NQ90 1003 aa17.47■□□□□ 0.39
SDC1-201ENST00000254351 PALD1Q9ULE6 856 aa17.47■□□□□ 0.39
SDC1-201ENST00000254351 CFAP65Q6ZU64 1925 aaKnown RBP17.47■□□□□ 0.39
SDC1-201ENST00000254351 U2AF2P26368 475 aaKnown RBP eCLIP17.47■□□□□ 0.39
SDC1-201ENST00000254351 TRIM6-TRIM34B2RNG4 842 aa17.47■□□□□ 0.39
SDC1-201ENST00000254351 MYRIPQ8NFW9 859 aa17.47■□□□□ 0.39
SDC1-201ENST00000254351 STAC3Q96MF2 364 aa17.47■□□□□ 0.39
SDC1-201ENST00000254351 MLECQ14165 292 aa17.46■□□□□ 0.39
SDC1-201ENST00000254351 USP48Q86UV5 1035 aa17.46■□□□□ 0.39
SDC1-201ENST00000254351 DMTNQ08495 405 aa17.45■□□□□ 0.38
SDC1-201ENST00000254351 MTERF4Q7Z6M4 381 aaKnown RBP17.45■□□□□ 0.38
SDC1-201ENST00000254351 A0A1W2PP64 1363 aa17.45■□□□□ 0.38
SDC1-201ENST00000254351 KIF3AQ9Y496 699 aa17.45■□□□□ 0.38
SDC1-201ENST00000254351 EXOC6BQ9Y2D4 811 aa17.45■□□□□ 0.38
SDC1-201ENST00000254351 NEURL4Q96JN8 1562 aa17.45■□□□□ 0.38
SDC1-201ENST00000254351 MEIS3Q99687 375 aa17.44■□□□□ 0.38
SDC1-201ENST00000254351 CLTCQ00610 1675 aaKnown RBP17.44■□□□□ 0.38
SDC1-201ENST00000254351 FIBPO43427 364 aa17.44■□□□□ 0.38
SDC1-201ENST00000254351 MAP4K4O95819 1239 aaPredicted RBP17.44■□□□□ 0.38
SDC1-201ENST00000254351 BCL2L12Q9HB09 334 aa17.44■□□□□ 0.38
SDC1-201ENST00000254351 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.43■□□□□ 0.38
SDC1-201ENST00000254351 REC8O95072 547 aa17.43■□□□□ 0.38
SDC1-201ENST00000254351 C14orf93Q9H972 538 aaKnown RBP17.43■□□□□ 0.38
SDC1-201ENST00000254351 ERC2O15083 957 aa17.43■□□□□ 0.38
SDC1-201ENST00000254351 MBD3O95983 291 aa17.43■□□□□ 0.38
SDC1-201ENST00000254351 MCM5P33992 734 aa17.43■□□□□ 0.38
SDC1-201ENST00000254351 DCTPP1Q9H773 170 aa17.43■□□□□ 0.38
SDC1-201ENST00000254351 MIS18AQ9NYP9 233 aa17.43■□□□□ 0.38
SDC1-201ENST00000254351 EMILIN1Q9Y6C2 1016 aa17.43■□□□□ 0.38
SDC1-201ENST00000254351 GIMAP6Q6P9H5 292 aa17.43■□□□□ 0.38
SDC1-201ENST00000254351 CNPY2Q9Y2B0 182 aa17.43■□□□□ 0.38
SDC1-201ENST00000254351 CABP1Q9NZU7 370 aa17.42■□□□□ 0.38
SDC1-201ENST00000254351 F6X3S4 739 aa17.41■□□□□ 0.38
SDC1-201ENST00000254351 ZBTB22O15209 634 aa17.41■□□□□ 0.38
SDC1-201ENST00000254351 PDCL2Q8N4E4 241 aa17.41■□□□□ 0.38
SDC1-201ENST00000254351 SOX12O15370 315 aa17.41■□□□□ 0.38
SDC1-201ENST00000254351 PREX1Q8TCU6 1659 aa17.41■□□□□ 0.38
SDC1-201ENST00000254351 ANKRD36BQ8N2N9 1353 aa17.4■□□□□ 0.38
SDC1-201ENST00000254351 NECTIN2Q92692 538 aa17.4■□□□□ 0.38
SDC1-201ENST00000254351 ZRANB1Q9UGI0 708 aa17.4■□□□□ 0.38
SDC1-201ENST00000254351 KIF1BO60333 1816 aa17.4■□□□□ 0.38
SDC1-201ENST00000254351 DDX54Q8TDD1 881 aaKnown RBP17.4■□□□□ 0.38
SDC1-201ENST00000254351 PIBF1Q8WXW3 757 aa17.4■□□□□ 0.38
SDC1-201ENST00000254351 SYAP1Q96A49 352 aaPredicted RBP17.4■□□□□ 0.38
SDC1-201ENST00000254351 CHMP4BQ9H444 224 aaKnown RBP17.4■□□□□ 0.38
SDC1-201ENST00000254351 ESF1Q9H501 851 aaKnown RBP17.4■□□□□ 0.38
SDC1-201ENST00000254351 PYCARDQ9ULZ3 195 aa17.4■□□□□ 0.38
SDC1-201ENST00000254351 IL16Q14005 1332 aa17.4■□□□□ 0.38
SDC1-201ENST00000254351 PIK3C2BO00750 1634 aa17.4■□□□□ 0.38
SDC1-201ENST00000254351 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.39■□□□□ 0.37
SDC1-201ENST00000254351 RIOK3O14730 519 aaKnown RBP17.39■□□□□ 0.37
SDC1-201ENST00000254351 NAA30Q147X3 362 aaPredicted RBP17.39■□□□□ 0.37
SDC1-201ENST00000254351 BRD1O95696 1058 aa17.38■□□□□ 0.37
SDC1-201ENST00000254351 GNAI1P63096 354 aa17.38■□□□□ 0.37
SDC1-201ENST00000254351 RRS1Q15050 365 aaKnown RBP17.38■□□□□ 0.37
SDC1-201ENST00000254351 CEP85Q6P2H3 762 aa17.38■□□□□ 0.37
SDC1-201ENST00000254351 BBXQ8WY36 941 aaPredicted RBP17.38■□□□□ 0.37
SDC1-201ENST00000254351 PRAM1Q96QH2 718 aa17.38■□□□□ 0.37
SDC1-201ENST00000254351 API5Q9BZZ5 524 aaKnown RBP17.38■□□□□ 0.37
SDC1-201ENST00000254351 ADGRB3O60242 1522 aa17.38■□□□□ 0.37
SDC1-201ENST00000254351 FCHSD2O94868 740 aa17.38■□□□□ 0.37
SDC1-201ENST00000254351 NFE2L2Q16236 605 aa17.38■□□□□ 0.37
SDC1-201ENST00000254351 ZNF771Q7L3S4 317 aaPredicted RBP17.38■□□□□ 0.37
SDC1-201ENST00000254351 CGNQ9P2M7 1197 aaKnown RBP17.38■□□□□ 0.37
SDC1-201ENST00000254351 ABCC4O15439 1325 aa17.38■□□□□ 0.37
SDC1-201ENST00000254351 TERF2IPQ9NYB0 399 aa17.37■□□□□ 0.37
SDC1-201ENST00000254351 VGLL3A8MV65 326 aa17.36■□□□□ 0.37
SDC1-201ENST00000254351 CPA1P15085 419 aa17.36■□□□□ 0.37
SDC1-201ENST00000254351 SLC52A1Q9NWF4 448 aa17.36■□□□□ 0.37
SDC1-201ENST00000254351 MCM10Q7L590 875 aa17.36■□□□□ 0.37
SDC1-201ENST00000254351 SPATA31D1Q6ZQQ2 1576 aa17.36■□□□□ 0.37
SDC1-201ENST00000254351 CAMK4Q16566 473 aa17.36■□□□□ 0.37
SDC1-201ENST00000254351 FBXO31Q5XUX0 539 aaPredicted RBP17.36■□□□□ 0.37
SDC1-201ENST00000254351 MROH2AA6NES4 1674 aa17.35■□□□□ 0.37
SDC1-201ENST00000254351 ZNF592Q92610 1267 aa17.35■□□□□ 0.37
SDC1-201ENST00000254351 SRCIN1Q9C0H9 1055 aa17.35■□□□□ 0.37
SDC1-201ENST00000254351 POLKQ9UBT6 870 aa17.35■□□□□ 0.37
SDC1-201ENST00000254351 HMGN5P82970 282 aaKnown RBP17.35■□□□□ 0.37
SDC1-201ENST00000254351 CHAF1AQ13111 956 aaPredicted RBP17.35■□□□□ 0.37
SDC1-201ENST00000254351 C16orf45Q96MC5 204 aaPredicted RBP17.35■□□□□ 0.37
SDC1-201ENST00000254351 AP5Z1O43299 807 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms