RNA–Protein interactions for RNA: ENSMUST00000109477.1

Ccdc88a-202, Transcript of Girdin, mousemouse

TSL 2 BASIC

Gene Ccdc88a, Length 1,716 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-202ENSMUST00000109477 Simc1E9Q6E9 1354 aa27.31■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 Sos1Q62245 1319 aa27.3■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 Apbb1Q9QXJ1 710 aa27.3■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 NeflP08551 543 aa27.3■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 Pak3Q61036 559 aa27.3■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 Amotl1Q9D4H4 968 aa27.3■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 Ccdc171E9Q1U1 1324 aa27.29■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 Dmrt2Q8BG36 561 aa27.29■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 Ppp1r37Q8BKR5 712 aa27.29■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 SafbD3YXK2 937 aaKnown RBP27.28■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 Zranb3Q6NZP1 1069 aa27.28■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 Mbd3Q9Z2D8 285 aaKnown RBP27.28■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 Gm10471E9Q1C7 252 aa27.27■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 Sf3b2Q3UJB0 878 aaKnown RBP27.27■■□□□ 1.96
Ccdc88a-202ENSMUST00000109477 Fbln2P37889 1221 aa27.26■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 Zpr1Q62384 459 aa27.26■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 Myo5bP21271 1818 aa27.25■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 Nup153E9Q3G8 1462 aaKnown RBP27.25■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 Aplp2Q06335 707 aa27.24■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 Usp16Q99LG0 825 aa27.24■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 Tnrc6cQ3UHC0 1690 aaKnown RBP27.23■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 U2surpQ6NV83 1029 aaKnown RBP27.23■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 Pm20d1Q8C165 503 aa27.23■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 Ccdc60Q8C4J0 545 aa27.23■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 Fer1l6E0CZ42 1862 aa27.22■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 Snap23O09044 210 aa27.21■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 Akap11E9Q777 1895 aa27.2■■□□□ 1.95
Ccdc88a-202ENSMUST00000109477 Trim58Q5NCC9 485 aa27.2■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Klhdc4Q921I2 584 aa27.19■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Cacna1sQ02789 1880 aa27.19■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Vamp4O70480 141 aa27.19■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Sgsm1Q8BPQ7 1093 aa27.19■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Cc2d1aQ8K1A6 943 aa27.19■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Ggnbp2Q5SV77 696 aa27.18■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Tnks1bp1P58871 1720 aa27.17■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Gm6268A2A3U9 297 aa27.17■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 G3bp1P97855 465 aaKnown RBP27.17■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Abcc12Q80WJ6 1366 aa27.16■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 ThemisQ8BGW0 636 aa27.16■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Prkrip1Q9CWV6 186 aaKnown RBP27.16■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Kat6bQ8BRB7 1872 aa27.15■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Senp3Q9EP97 568 aaKnown RBP27.15■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Prim1P20664 417 aa27.14■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Adgrb1Q3UHD1 1582 aa27.14■■□□□ 1.94
Ccdc88a-202ENSMUST00000109477 Aox2Q5SGK3 1345 aa27.13■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 Kcnh8P59111 1102 aa27.13■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 Pank1Q8K4K6 548 aa27.13■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 Ltbp1Q8CG19 1712 aa27.13■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 Fam50bQ9WTJ8 334 aa27.13■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 KarsQ99MN1 595 aaKnown RBP27.11■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 Mast2Q60592 1734 aa27.11■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 Plekhm2Q80TQ5 1018 aa27.1■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 Igsf1Q7TQA1 1317 aa27.1■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 4930572O03RikQ8C5Y0 211 aa27.1■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 Nsd3Q6P2L6 1439 aa27.09■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 Cavin2Q63918 418 aaKnown RBP27.08■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 Ankrd23Q812A3 306 aa27.08■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 Ginm1Q91WR6 327 aa27.08■■□□□ 1.93
Ccdc88a-202ENSMUST00000109477 1700019A02RikA0A087WPV9 146 aa27.07■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Vps33bP59016 617 aa27.07■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Foxp4Q9DBY0 795 aaKnown RBP27.07■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Tns2Q8CGB6 1400 aa27.07■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Kcnh4A2A5F7 1018 aa27.07■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Mst1rQ62190 1378 aa27.07■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Pibf1E9Q6K3 756 aa27.05■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Znf521Q6KAS7 1311 aa27.05■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Sik1Q60670 779 aa27.04■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Wdr43Q6ZQL4 677 aaKnown RBP27.04■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Tmco5bQ80X59 307 aa27.04■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Speer4bQ9D9F7 267 aa27.02■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Pdzd9Q9D9M4 266 aa27.02■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 AampJ3QN89 436 aa27.02■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Rangap1P46061 589 aaKnown RBP27.02■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Phkg2Q9DB30 406 aa27.02■■□□□ 1.92
Ccdc88a-202ENSMUST00000109477 Nwd2Q6P5U7 1742 aa27.01■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Dlg5E9Q9R9 1921 aa27.01■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Gm21680A0A0G2JGR8 267 aa27.01■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Exoc5Q3TPX4 708 aa27.01■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Tspyl2Q7TQI8 677 aa27.01■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Nectin2P32507 530 aa27■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Msh6P54276 1358 aaKnown RBP27■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Chmp7Q8R1T1 451 aa26.99■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Chl1P70232 1209 aa26.99■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Q3TQI7 289 aaKnown RBP26.99■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Ddb1Q3U1J4 1140 aaKnown RBP26.99■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Q3UPC7 1272 aa26.99■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Aldh1l1Q8R0Y6 902 aa26.99■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Gm38655A0A286YDK6 273 aa26.98■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Elp1Q7TT37 1333 aaKnown RBP26.98■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 GapdhsQ64467 440 aa26.96■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 MarsQ68FL6 902 aaKnown RBP26.96■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Btbd11Q6GQW0 1109 aa26.96■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Larp1Q6ZQ58 1072 aaKnown RBP26.96■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Ubr2Q6WKZ8 1755 aa26.96■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Eif3bQ8JZQ9 803 aaKnown RBP26.96■■□□□ 1.91
Ccdc88a-202ENSMUST00000109477 Atf5O70191 283 aa26.95■■□□□ 1.9
Ccdc88a-202ENSMUST00000109477 Nkx2-3P97334 362 aa26.95■■□□□ 1.9
Ccdc88a-202ENSMUST00000109477 Ppp4r2Q0VGB7 417 aa26.95■■□□□ 1.9
Ccdc88a-202ENSMUST00000109477 Znf330Q922H9 316 aa26.95■■□□□ 1.9
Ccdc88a-202ENSMUST00000109477 Ppp1r3fQ9JIG4 799 aa26.95■■□□□ 1.9
Retrieved 100 of 22,080 RNA–protein pairs in 11.4 ms