RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 CDK3Q00526 305 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 FKBP3Q00688 224 aaKnown RBP13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 NFATC2Q13469 925 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 ACOX1Q15067 660 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 C8orf34Q49A92 452 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 DPPA4Q7L190 304 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 BNIPLQ7Z465 357 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 FAM131BQ86XD5 332 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 PLXDC1Q8IUK5 500 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 C1orf131Q8NDD1 294 aaKnown RBP13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 ST6GALNAC3Q8NDV1 305 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 SCARF2Q96GP6 870 aaPredicted RBP13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 C9orf72Q96LT7 481 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 COQ10AQ96MF6 247 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 OR2M4Q96R27 311 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 SMAD5Q99717 465 aaKnown RBP13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 NOL6Q9H6R4 1146 aaKnown RBP13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 SARS2Q9NP81 518 aaKnown RBP13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 PCDHGC3Q9UN70 934 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 NTNG1Q9Y2I2 539 aa13.78□□□□□ -0.2
NKX3-1-202ENST00000523261 A0A1B0GVL5 298 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 SSU72P8A0A1W2PR75 194 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 P4HA2O15460 535 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 C9P02748 559 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 LPOP22079 712 aaPredicted RBP13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 HNRNPH3P31942 346 aaKnown RBP13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 NRG1Q02297 640 aaPredicted RBP13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 CYTH1Q15438 398 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 RWDD4Q6NW29 188 aaKnown RBP13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 ZNF354CQ86Y25 554 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 EHBP1Q8NDI1 1231 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 ADAMTS17Q8TE56 1095 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 UBE2Q2Q8WVN8 375 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 NUS1Q96E22 293 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 EPB41L1Q9H4G0 881 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 GPR83Q9NYM4 423 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 OR12D3Q9UGF7 316 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 G3BP2Q9UN86 482 aaKnown RBP13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 B3GNT3Q9Y2A9 372 aa13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 COPG1Q9Y678 874 aaKnown RBP13.77□□□□□ -0.21
NKX3-1-202ENST00000523261 A6NL46 340 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 A8MX80 341 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 RASA4BC9J798 803 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 FAM72CH0Y354 149 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 ZNF185O15231 689 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 RASA4O43374 803 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 TIAF1O95411 115 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 PLEKP08567 350 aaPredicted RBP13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 SEPHS1P49903 392 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 PMS1P54277 932 aaKnown RBP13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 PTK2Q05397 1052 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 CETN1Q12798 172 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 ART3Q13508 389 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 FOXD4L6Q3SYB3 417 aaPredicted RBP13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 FAM72AQ5TYM5 149 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 FAM72DQ6L9T8 149 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 FAM199XQ6PEV8 388 aaPredicted RBP13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 FOXD4L3Q6VB84 417 aaPredicted RBP13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 FAM72BQ86X60 149 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 ZDHHC17Q8IUH5 632 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 GLIS1Q8NBF1 620 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 SH3KBP1Q96B97 665 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 ECHDC3Q96DC8 303 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 TUBGCP5Q96RT8 1024 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 TBC1D10AQ9BXI6 508 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 SYNCQ9H7C4 482 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 COPG2Q9UBF2 871 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 OSGIN2Q9Y236 505 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 HPSEQ9Y251 543 aa13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 MDC1Q14676 2089 aaKnown RBP13.76□□□□□ -0.21
NKX3-1-202ENST00000523261 ZGRF1Q86YA3 2104 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 BECN2A8MW95 431 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 CLCN1P35523 988 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 FLT3P36888 993 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 PRCPP42785 496 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 SNX16P57768 344 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 RPS15P62841 145 aaKnown RBP13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 PYCR3Q53H96 274 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 TRNP1Q6NT89 227 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 DOK6Q6PKX4 331 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 PPP1R3BQ86XI6 285 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 INPP5DQ92835 1189 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 TSG101Q99816 390 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 MAGEB5Q9BZ81 275 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 TRIM8Q9BZR9 551 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 STN1Q9H668 368 aaKnown RBP13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 UBE2TQ9NPD8 197 aaPredicted RBP13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 LATS2Q9NRM7 1088 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 OGFRQ9NZT2 677 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 C5AR2Q9P296 337 aa13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 KLF2Q9Y5W3 355 aaPredicted RBP13.75□□□□□ -0.21
NKX3-1-202ENST00000523261 TOX3O15405 576 aaPredicted RBP13.74□□□□□ -0.21
NKX3-1-202ENST00000523261 TMEM63AO94886 807 aa13.74□□□□□ -0.21
NKX3-1-202ENST00000523261 LRIG2O94898 1065 aa13.74□□□□□ -0.21
NKX3-1-202ENST00000523261 TEAD1P28347 426 aa13.74□□□□□ -0.21
NKX3-1-202ENST00000523261 SERPINA4P29622 427 aa13.74□□□□□ -0.21
NKX3-1-202ENST00000523261 SCNN1AP37088 669 aa13.74□□□□□ -0.21
NKX3-1-202ENST00000523261 HDAC4P56524 1084 aa13.74□□□□□ -0.21
NKX3-1-202ENST00000523261 MIIPQ5JXC2 388 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 817.6 ms