RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 SAR1AQ9NR31 198 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 ARHGEF3Q9NR81 526 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 LIMD1Q9UGP4 676 aa22.61■■□□□ 1.21
CDX1-201ENST00000231656 TARM1B6A8C7 271 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 PRRT4C9JH25 899 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 TK2O00142 265 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 S1PR4O95977 384 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 ATP5BP06576 529 aaKnown RBP22.6■■□□□ 1.21
CDX1-201ENST00000231656 NQO1P15559 274 aaKnown RBP22.6■■□□□ 1.21
CDX1-201ENST00000231656 TARSP26639 723 aaKnown RBP22.6■■□□□ 1.21
CDX1-201ENST00000231656 CSNK1DP48730 415 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 AQP5P55064 265 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 KCNJ2P63252 427 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 ACCSLQ4AC99 568 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 RALGPS1Q5JS13 557 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 LRRC8EQ6NSJ5 796 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 C22orf39Q6P5X5 142 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 NAPRTQ6XQN6 538 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 PACS2Q86VP3 889 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 PNPLA1Q8N8W4 532 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 GPR150Q8NGU9 434 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 PIWIL2Q8TC59 973 aaKnown RBP22.6■■□□□ 1.21
CDX1-201ENST00000231656 NXPE3Q969Y0 559 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 NDNQ99608 321 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 OLFM1Q99784 485 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 SIKE1Q9BRV8 207 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 CEP44Q9C0F1 390 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 SUDS3Q9H7L9 328 aaPredicted RBP22.6■■□□□ 1.21
CDX1-201ENST00000231656 OXSMQ9NWU1 459 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 ELOVL2Q9NXB9 296 aa22.6■■□□□ 1.21
CDX1-201ENST00000231656 CPSF2Q9P2I0 782 aaKnown RBP22.6■■□□□ 1.21
CDX1-201ENST00000231656 CCDC162PA2VCL2 907 aa22.59■■□□□ 1.21
CDX1-201ENST00000231656 BUD23O43709 281 aaKnown RBP22.59■■□□□ 1.21
CDX1-201ENST00000231656 KLHL2O95198 593 aa22.59■■□□□ 1.21
CDX1-201ENST00000231656 GOT2P00505 430 aaKnown RBP22.59■■□□□ 1.21
CDX1-201ENST00000231656 ASLP04424 464 aa22.59■■□□□ 1.21
CDX1-201ENST00000231656 EIF2DP41214 584 aaKnown RBP22.59■■□□□ 1.21
CDX1-201ENST00000231656 ZNF140P52738 457 aaPredicted RBP22.59■■□□□ 1.21
CDX1-201ENST00000231656 SMAD2Q15796 467 aaKnown RBP22.59■■□□□ 1.21
CDX1-201ENST00000231656 PTPRNQ16849 979 aa22.59■■□□□ 1.21
CDX1-201ENST00000231656 TBC1D1Q86TI0 1168 aaPredicted RBP22.59■■□□□ 1.21
CDX1-201ENST00000231656 TERB1Q8NA31 727 aa22.59■■□□□ 1.21
CDX1-201ENST00000231656 OR2AP1Q8NGE2 309 aa22.59■■□□□ 1.21
CDX1-201ENST00000231656 OR13C4Q8NGS5 318 aa22.59■■□□□ 1.21
CDX1-201ENST00000231656 MYO19Q96H55 970 aa22.59■■□□□ 1.21
CDX1-201ENST00000231656 WWP1Q9H0M0 922 aa22.59■■□□□ 1.21
CDX1-201ENST00000231656 KCNK12Q9HB15 430 aa22.59■■□□□ 1.21
CDX1-201ENST00000231656 PCDHGC4Q9Y5F7 938 aa22.59■■□□□ 1.21
CDX1-201ENST00000231656 RAI2Q9Y5P3 530 aa22.59■■□□□ 1.21
CDX1-201ENST00000231656 TMEM114B3SHH9 223 aa22.58■■□□□ 1.21
CDX1-201ENST00000231656 TRIM13O60858 407 aa22.58■■□□□ 1.21
CDX1-201ENST00000231656 H2AFYO75367 372 aaKnown RBP22.58■■□□□ 1.21
CDX1-201ENST00000231656 PSMA3P25788 255 aa22.58■■□□□ 1.21
CDX1-201ENST00000231656 GLRBP48167 497 aa22.58■■□□□ 1.21
CDX1-201ENST00000231656 AP1S1P61966 158 aa22.58■■□□□ 1.21
CDX1-201ENST00000231656 SNRPD1P62314 119 aaKnown RBP22.58■■□□□ 1.21
CDX1-201ENST00000231656 ZBTB16Q05516 673 aa22.58■■□□□ 1.21
CDX1-201ENST00000231656 LEXMQ3ZCV2 418 aa22.58■■□□□ 1.21
CDX1-201ENST00000231656 TTC31Q49AM3 519 aaPredicted RBP22.58■■□□□ 1.21
CDX1-201ENST00000231656 FAM91A1Q658Y4 838 aa22.58■■□□□ 1.21
CDX1-201ENST00000231656 LDB1Q86U70 411 aaPredicted RBP22.58■■□□□ 1.21
CDX1-201ENST00000231656 PLCD3Q8N3E9 789 aa22.58■■□□□ 1.21
CDX1-201ENST00000231656 FSTL5Q8N475 847 aaPredicted RBP22.58■■□□□ 1.21
CDX1-201ENST00000231656 PCDH20Q8N6Y1 951 aaKnown RBP22.58■■□□□ 1.21
CDX1-201ENST00000231656 OR6K2Q8NGY2 324 aa22.58■■□□□ 1.21
CDX1-201ENST00000231656 NXNL1Q96CM4 212 aa22.58■■□□□ 1.21
CDX1-201ENST00000231656 PRR11Q96HE9 360 aaPredicted RBP22.58■■□□□ 1.21
CDX1-201ENST00000231656 EVLQ9UI08 416 aaPredicted RBP22.58■■□□□ 1.21
CDX1-201ENST00000231656 HAO1Q9UJM8 370 aa22.58■■□□□ 1.21
CDX1-201ENST00000231656 FCHO1O14526 889 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 CRTAMO95727 393 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 IGSF6O95976 241 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 SRPRAP08240 638 aaKnown RBP22.58■■□□□ 1.2
CDX1-201ENST00000231656 PDHA1P08559 390 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 NNMTP40261 264 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 VASPP50552 380 aaPredicted RBP22.58■■□□□ 1.2
CDX1-201ENST00000231656 SLC12A2P55011 1212 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 TRAF2Q12933 501 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 EIF4HQ15056 248 aaKnown RBP22.58■■□□□ 1.2
CDX1-201ENST00000231656 TSNAXIP1Q2TAA8 658 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 HECTD2Q5U5R9 776 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 ALYREFQ86V81 257 aaKnown RBP22.58■■□□□ 1.2
CDX1-201ENST00000231656 SFTPA1Q8IWL2 248 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 KIF2BQ8N4N8 673 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 CSGALNACT1Q8TDX6 532 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 PPP4R1Q8TF05 950 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 RMDN1Q96DB5 314 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 SCYL1Q96KG9 808 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 LRMDAQ9H2I8 198 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 IGSF5Q9NSI5 407 aa22.58■■□□□ 1.2
CDX1-201ENST00000231656 NLE1Q9NVX2 485 aaPredicted RBP22.58■■□□□ 1.2
CDX1-201ENST00000231656 CD3EAPO15446 510 aaKnown RBP22.57■■□□□ 1.2
CDX1-201ENST00000231656 CBX6O95503 412 aa22.57■■□□□ 1.2
CDX1-201ENST00000231656 SOX9P48436 509 aa22.57■■□□□ 1.2
CDX1-201ENST00000231656 ELF3P78545 371 aaPredicted RBP22.57■■□□□ 1.2
CDX1-201ENST00000231656 TAF1AQ15573 450 aaPredicted RBP22.57■■□□□ 1.2
CDX1-201ENST00000231656 WDR75Q8IWA0 830 aaKnown RBP22.57■■□□□ 1.2
CDX1-201ENST00000231656 SREK1Q8WXA9 508 aaKnown RBP22.57■■□□□ 1.2
CDX1-201ENST00000231656 TSPAN17Q96FV3 270 aa22.57■■□□□ 1.2
CDX1-201ENST00000231656 GATA5Q9BWX5 397 aaPredicted RBP22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms