RNA–Protein interactions for RNA: YPR088C

SRP54, Transcript of Signal recognition particle (SRP) subunit (homolog of mammalian SRP54), yeastyeast

Gene SRP54, Length 1,626 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SRP54YPR088C CSM2P40465 213 aa9.55□□□□□ -0.88
SRP54YPR088C HCA4P20448 770 aaKnown RBP9.54□□□□□ -0.88
SRP54YPR088C RNR3P21672 869 aaKnown RBP9.54□□□□□ -0.88
SRP54YPR088C SWI4P25302 1093 aaKnown RBP9.54□□□□□ -0.88
SRP54YPR088C MAL33P38157 468 aa9.54□□□□□ -0.88
SRP54YPR088C RPN10P38886 268 aaKnown RBP9.54□□□□□ -0.88
SRP54YPR088C CIR1P42940 261 aa9.54□□□□□ -0.88
SRP54YPR088C SNU71P53207 620 aaKnown RBP9.54□□□□□ -0.88
SRP54YPR088C PEX19Q07418 342 aa9.54□□□□□ -0.88
SRP54YPR088C CLF1Q12309 687 aaPredicted RBP9.54□□□□□ -0.88
SRP54YPR088C YOR111WQ99210 232 aa9.54□□□□□ -0.88
SRP54YPR088C KEX1P09620 729 aa9.53□□□□□ -0.88
SRP54YPR088C RPL8BP29453 256 aaKnown RBP9.53□□□□□ -0.88
SRP54YPR088C ARL1P38116 183 aaKnown RBP9.53□□□□□ -0.88
SRP54YPR088C CST26P38226 397 aa9.53□□□□□ -0.88
SRP54YPR088C NIT1P40447 199 aa9.53□□□□□ -0.88
SRP54YPR088C RDS1P25611 832 aa9.53□□□□□ -0.88
SRP54YPR088C ELM1P32801 640 aa9.53□□□□□ -0.88
SRP54YPR088C KEL1P38853 1164 aaKnown RBP9.53□□□□□ -0.88
SRP54YPR088C FOL1P53848 824 aa9.53□□□□□ -0.88
SRP54YPR088C AIM44Q99299 758 aa9.53□□□□□ -0.88
SRP54YPR088C HSP82P02829 709 aaKnown RBP9.52□□□□□ -0.89
SRP54YPR088C PGI1P12709 554 aaKnown RBP9.52□□□□□ -0.89
SRP54YPR088C MBR1P23493 339 aa9.52□□□□□ -0.89
SRP54YPR088C CHS3P29465 1165 aa9.52□□□□□ -0.89
SRP54YPR088C GDE1Q02979 1223 aa9.52□□□□□ -0.89
SRP54YPR088C CLC1P17891 233 aa9.51□□□□□ -0.89
SRP54YPR088C ACE2P21192 770 aa9.51□□□□□ -0.89
SRP54YPR088C RXT2P38255 430 aa9.51□□□□□ -0.89
SRP54YPR088C VPS30Q02948 557 aa9.51□□□□□ -0.89
SRP54YPR088C TUS1Q06412 1307 aa9.51□□□□□ -0.89
SRP54YPR088C NUC1P08466 329 aa9.5□□□□□ -0.89
SRP54YPR088C GAL2P13181 574 aa9.5□□□□□ -0.89
SRP54YPR088C ASF1P32447 279 aa9.5□□□□□ -0.89
SRP54YPR088C TOM71P38825 639 aaKnown RBP9.5□□□□□ -0.89
SRP54YPR088C RSM25P40496 264 aa9.5□□□□□ -0.89
SRP54YPR088C PCI8P40512 444 aa9.5□□□□□ -0.89
SRP54YPR088C PIL1P53252 339 aaKnown RBP9.5□□□□□ -0.89
SRP54YPR088C YDR341CQ05506 607 aaKnown RBP9.5□□□□□ -0.89
SRP54YPR088C TUB2P02557 457 aaKnown RBP9.49□□□□□ -0.89
SRP54YPR088C CDC6P09119 513 aa9.49□□□□□ -0.89
SRP54YPR088C TPS3P38426 1054 aaKnown RBP9.49□□□□□ -0.89
SRP54YPR088C CCT5P40413 562 aaKnown RBP9.49□□□□□ -0.89
SRP54YPR088C FAR11P53917 953 aa9.49□□□□□ -0.89
SRP54YPR088C LAP2Q10740 671 aa9.49□□□□□ -0.89
SRP54YPR088C APC11Q12157 165 aa9.49□□□□□ -0.89
SRP54YPR088C CSR2Q12734 1121 aa9.49□□□□□ -0.89
SRP54YPR088C MET6P05694 767 aaKnown RBP9.49□□□□□ -0.89
SRP54YPR088C SRP54P20424 541 aaKnown RBP9.49□□□□□ -0.89
SRP54YPR088C MDM1Q01846 1127 aa9.49□□□□□ -0.89
SRP54YPR088C PUS5Q06244 254 aa9.49□□□□□ -0.89
SRP54YPR088C DSE3Q08729 430 aa9.49□□□□□ -0.89
SRP54YPR088C DCS2Q12123 353 aa9.49□□□□□ -0.89
SRP54YPR088C CEX1Q12453 761 aa9.49□□□□□ -0.89
SRP54YPR088C FRS2P15625 503 aaKnown RBP9.48□□□□□ -0.89
SRP54YPR088C RVS167P39743 482 aaKnown RBP9.48□□□□□ -0.89
SRP54YPR088C PEA2P40091 420 aa9.48□□□□□ -0.89
SRP54YPR088C ETT1Q08421 412 aaKnown RBP9.48□□□□□ -0.89
SRP54YPR088C GET3Q12154 354 aaKnown RBP9.48□□□□□ -0.89
SRP54YPR088C CIT1P00890 479 aa9.47□□□□□ -0.89
SRP54YPR088C VPS1P21576 704 aaKnown RBP9.47□□□□□ -0.89
SRP54YPR088C SPB4P25808 606 aaPredicted RBP9.47□□□□□ -0.89
SRP54YPR088C VPS45P38932 577 aa9.47□□□□□ -0.89
SRP54YPR088C UBP9P39967 754 aa9.47□□□□□ -0.89
SRP54YPR088C YGL138CP53122 345 aa9.47□□□□□ -0.89
SRP54YPR088C NAF1P53919 492 aaKnown RBP9.47□□□□□ -0.89
SRP54YPR088C DDP1Q99321 188 aaKnown RBP9.47□□□□□ -0.89
SRP54YPR088C SAM2P19358 384 aaKnown RBP9.46□□□□□ -0.89
SRP54YPR088C RPN12P32496 274 aa9.46□□□□□ -0.89
SRP54YPR088C RFT1P38206 574 aaPredicted RBP9.46□□□□□ -0.89
SRP54YPR088C TIF4631P39935 952 aaKnown RBP9.46□□□□□ -0.89
SRP54YPR088C KRE33P53914 1056 aaKnown RBP9.46□□□□□ -0.89
SRP54YPR088C CWC15Q03772 175 aaKnown RBP9.46□□□□□ -0.89
SRP54YPR088C ERG12P07277 443 aa9.45□□□□□ -0.9
SRP54YPR088C STI1P15705 589 aaKnown RBP RIP-Chip data9.45□□□□□ -0.9not detected
SRP54YPR088C SEC20P28791 383 aa9.45□□□□□ -0.9
SRP54YPR088C CCT3P39077 534 aaKnown RBP9.45□□□□□ -0.9
SRP54YPR088C ARP8Q12386 881 aaKnown RBP RIP-Chip data9.45□□□□□ -0.9not detected
SRP54YPR088C MYO1P08964 1928 aa9.45□□□□□ -0.9
SRP54YPR088C HXK1P04806 485 aaKnown RBP9.45□□□□□ -0.9
SRP54YPR088C SPT21P35209 758 aa9.45□□□□□ -0.9
SRP54YPR088C AVT3P36062 692 aa9.45□□□□□ -0.9
SRP54YPR088C ACA1P39970 489 aa9.45□□□□□ -0.9
SRP54YPR088C NBL1Q3E7Y6 73 aa9.45□□□□□ -0.9
SRP54YPR088C RGP1P16664 663 aa9.44□□□□□ -0.9
SRP54YPR088C MAK11P20484 414 aaKnown RBP9.44□□□□□ -0.9
SRP54YPR088C DID4P36108 232 aa9.44□□□□□ -0.9
SRP54YPR088C VHR2P40041 505 aa9.44□□□□□ -0.9
SRP54YPR088C SOL4P53315 255 aa9.44□□□□□ -0.9
SRP54YPR088C GIS4Q04233 774 aa9.44□□□□□ -0.9
SRP54YPR088C CSC1Q06538 782 aa9.44□□□□□ -0.9
SRP54YPR088C KNS1P32350 737 aaPredicted RBP9.43□□□□□ -0.9
SRP54YPR088C TPM2P40414 161 aa9.43□□□□□ -0.9
SRP54YPR088C LSB1P53281 241 aa9.43□□□□□ -0.9
SRP54YPR088C SUB2Q07478 446 aaKnown RBP9.43□□□□□ -0.9
SRP54YPR088C TIP41Q12199 356 aa9.43□□□□□ -0.9
SRP54YPR088C KRS1P15180 591 aaKnown RBP9.42□□□□□ -0.9
SRP54YPR088C RPL8AP17076 256 aaKnown RBP9.42□□□□□ -0.9
SRP54YPR088C PEX21P50091 288 aa9.42□□□□□ -0.9
SRP54YPR088C ASE1P50275 885 aa9.42□□□□□ -0.9
Retrieved 100 of 5,963 RNA–protein pairs in 107.5 ms