RNA–Protein interactions for RNA: YMR118C

SHH3, Transcript of Putative mitochondrial inner membrane protein of unknown function, yeast

Gene SHH3, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHH3	YMR118C	MTR4	P47047	1073 aa	Known RBP	4.08	□□□□□ -1.76
SHH3	YMR118C	YGL081W	P53156	320 aa		4.08	□□□□□ -1.76
SHH3	YMR118C	VPS20	Q04272	221 aa		4.08	□□□□□ -1.76
SHH3	YMR118C	LYS2	P07702	1392 aa		4.07	□□□□□ -1.76
SHH3	YMR118C	IRE1	P32361	1115 aa		4.07	□□□□□ -1.76
SHH3	YMR118C	AKL1	P38080	1108 aa	Known RBP	4.07	□□□□□ -1.76
SHH3	YMR118C	TCD1	P38756	429 aa		4.07	□□□□□ -1.76
SHH3	YMR118C	HXT13	P39924	564 aa		4.07	□□□□□ -1.76
SHH3	YMR118C	CIR1	P42940	261 aa		4.07	□□□□□ -1.76
SHH3	YMR118C	JJJ2	P46997	583 aa		4.07	□□□□□ -1.76
SHH3	YMR118C	ZDS1	P50111	915 aa	Known RBP	4.07	□□□□□ -1.76
SHH3	YMR118C	DSD1	P53095	428 aa		4.07	□□□□□ -1.76
SHH3	YMR118C	HOS3	Q02959	697 aa	Known RBP	4.07	□□□□□ -1.76
SHH3	YMR118C	SRT1	Q03175	343 aa		4.07	□□□□□ -1.76
SHH3	YMR118C	CSI1	Q04368	295 aa		4.07	□□□□□ -1.76
SHH3	YMR118C	HDA3	Q06623	655 aa		4.07	□□□□□ -1.76
SHH3	YMR118C	RPS19A	P07280	144 aa	Known RBP	4.06	□□□□□ -1.76
SHH3	YMR118C	RPS19B	P07281	144 aa	Predicted RBP	4.06	□□□□□ -1.76
SHH3	YMR118C	MCX1	P38323	520 aa	Predicted RBP	4.06	□□□□□ -1.76
SHH3	YMR118C	BRL1	P38770	471 aa		4.06	□□□□□ -1.76
SHH3	YMR118C	MAM1	P40065	302 aa		4.06	□□□□□ -1.76
SHH3	YMR118C	SLX8	P40072	274 aa		4.06	□□□□□ -1.76
SHH3	YMR118C	ATG3	P40344	310 aa		4.06	□□□□□ -1.76
SHH3	YMR118C	HYR1	P40581	163 aa	Known RBP	4.06	□□□□□ -1.76
SHH3	YMR118C	KRI1	P42846	591 aa	Known RBP	4.06	□□□□□ -1.76
SHH3	YMR118C	YNL050C	P53952	270 aa		4.06	□□□□□ -1.76
SHH3	YMR118C	HRQ1	Q05549	1077 aa		4.06	□□□□□ -1.76
SHH3	YMR118C	MLP1	Q02455	1875 aa	Known RBP	4.05	□□□□□ -1.76
SHH3	YMR118C	GPM1	P00950	247 aa	Known RBP	4.05	□□□□□ -1.76
SHH3	YMR118C	VAS1	P07806	1104 aa	Known RBP	4.05	□□□□□ -1.76
SHH3	YMR118C	CPS1	P27614	576 aa		4.05	□□□□□ -1.76
SHH3	YMR118C	MRPL16	P38064	232 aa		4.05	□□□□□ -1.76
SHH3	YMR118C	BOI2	P39969	1040 aa		4.05	□□□□□ -1.76
SHH3	YMR118C	STU2	P46675	888 aa		4.05	□□□□□ -1.76
SHH3	YMR118C	SMC3	P47037	1230 aa		4.05	□□□□□ -1.76
SHH3	YMR118C	HXT17	P53631	564 aa		4.05	□□□□□ -1.76
SHH3	YMR118C	RIA1	P53893	1110 aa		4.05	□□□□□ -1.76
SHH3	YMR118C	UTP13	Q05946	817 aa	Known RBP	4.05	□□□□□ -1.76
SHH3	YMR118C	GAS4	Q08271	471 aa		4.05	□□□□□ -1.76
SHH3	YMR118C	CDC16	P09798	840 aa		4.04	□□□□□ -1.76
SHH3	YMR118C	CYC8	P14922	966 aa		4.04	□□□□□ -1.76
SHH3	YMR118C	MRPL10	P36520	322 aa		4.04	□□□□□ -1.76
SHH3	YMR118C	SHM1	P37292	490 aa	Predicted RBP	4.04	□□□□□ -1.76
SHH3	YMR118C	PBY1	P38254	753 aa		4.04	□□□□□ -1.76
SHH3	YMR118C	YBR287W	P38355	427 aa		4.04	□□□□□ -1.76
SHH3	YMR118C	RAD26	P40352	1085 aa		4.04	□□□□□ -1.76
SHH3	YMR118C	CWH41	P53008	833 aa		4.04	□□□□□ -1.76
SHH3	YMR118C	HPC2	Q01448	625 aa		4.04	□□□□□ -1.76
SHH3	YMR118C	APC11	Q12157	165 aa		4.04	□□□□□ -1.76
SHH3	YMR118C	TRL1	P09880	827 aa	Known RBP	4.03	□□□□□ -1.76
SHH3	YMR118C	RPS24A	P0CX31	135 aa	Known RBP	4.03	□□□□□ -1.76
SHH3	YMR118C	RPS24B	P0CX32	135 aa	Known RBP	4.03	□□□□□ -1.76
SHH3	YMR118C	TAF13	P11747	167 aa		4.03	□□□□□ -1.76
SHH3	YMR118C	PKC1	P24583	1151 aa		4.03	□□□□□ -1.76
SHH3	YMR118C	LTV1	P34078	463 aa		4.03	□□□□□ -1.76
SHH3	YMR118C	NTH2	P35172	780 aa		4.03	□□□□□ -1.76
SHH3	YMR118C	MPE1	P35728	441 aa	Known RBP	4.03	□□□□□ -1.76
SHH3	YMR118C	DID4	P36108	232 aa		4.03	□□□□□ -1.76
SHH3	YMR118C	TFB3	Q03290	321 aa		4.03	□□□□□ -1.76
SHH3	YMR118C	PEX19	Q07418	342 aa		4.03	□□□□□ -1.76
SHH3	YMR118C	NOP8	Q08287	484 aa	Predicted RBP	4.03	□□□□□ -1.76
SHH3	YMR118C	ETT1	Q08421	412 aa	Known RBP	4.03	□□□□□ -1.76
SHH3	YMR118C	BMS1	Q08965	1183 aa	Known RBP	4.03	□□□□□ -1.76
SHH3	YMR118C	PSH1	Q12161	406 aa		4.03	□□□□□ -1.76
SHH3	YMR118C	SFI1	Q12369	946 aa		4.03	□□□□□ -1.76
SHH3	YMR118C	STB3	Q12427	513 aa		4.03	□□□□□ -1.76
SHH3	YMR118C	YCK2	P23292	546 aa	Known RBP	4.02	□□□□□ -1.77
SHH3	YMR118C	PDC6	P26263	563 aa	Known RBP	4.02	□□□□□ -1.77
SHH3	YMR118C	GCD7	P32502	381 aa	Predicted RBP	4.02	□□□□□ -1.77
SHH3	YMR118C	MET1	P36150	593 aa		4.02	□□□□□ -1.77
SHH3	YMR118C	AMN1	P38285	549 aa	Predicted RBP	4.02	□□□□□ -1.77
SHH3	YMR118C	PEX14	P53112	341 aa		4.02	□□□□□ -1.77
SHH3	YMR118C	PRP43	P53131	767 aa	Known RBP	4.02	□□□□□ -1.77
SHH3	YMR118C	TIM50	Q02776	476 aa		4.02	□□□□□ -1.77
SHH3	YMR118C	VPS60	Q03390	229 aa		4.02	□□□□□ -1.77
SHH3	YMR118C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.02	□□□□□ -1.77	not detected
SHH3	YMR118C	COQ4	O13525	335 aa		4.01	□□□□□ -1.77
SHH3	YMR118C	RPL19A	P0CX82	189 aa	Known RBP	4.01	□□□□□ -1.77
SHH3	YMR118C	RPL19B	P0CX83	189 aa	Predicted RBP	4.01	□□□□□ -1.77
SHH3	YMR118C	RAD24	P32641	659 aa		4.01	□□□□□ -1.77
SHH3	YMR118C	MFT1	P33441	392 aa	Known RBP	4.01	□□□□□ -1.77
SHH3	YMR118C	MAC1	P35192	417 aa		4.01	□□□□□ -1.77
SHH3	YMR118C	NPR3	P38742	1146 aa		4.01	□□□□□ -1.77
SHH3	YMR118C	CIN4	P39110	191 aa		4.01	□□□□□ -1.77
SHH3	YMR118C	CCT5	P40413	562 aa	Known RBP	4.01	□□□□□ -1.77
SHH3	YMR118C	IRC24	P40580	263 aa		4.01	□□□□□ -1.77
SHH3	YMR118C	CEP3	P40969	608 aa		4.01	□□□□□ -1.77
SHH3	YMR118C	LSB6	P42951	607 aa		4.01	□□□□□ -1.77
SHH3	YMR118C	HGH1	P48362	394 aa	Known RBP	4.01	□□□□□ -1.77
SHH3	YMR118C	YNL108C	P53929	270 aa		4.01	□□□□□ -1.77
SHH3	YMR118C	ADE6	P38972	1358 aa	Known RBP	4.01	□□□□□ -1.77
SHH3	YMR118C	ENO2	P00925	437 aa	Known RBP	4	□□□□□ -1.77
SHH3	YMR118C	SES1	P07284	462 aa	Known RBP	4	□□□□□ -1.77
SHH3	YMR118C	SWI5	P08153	709 aa		4	□□□□□ -1.77
SHH3	YMR118C	SUP45	P12385	437 aa	Known RBP	4	□□□□□ -1.77
SHH3	YMR118C	BIO2	P32451	375 aa		4	□□□□□ -1.77
SHH3	YMR118C	ELM1	P32801	640 aa		4	□□□□□ -1.77
SHH3	YMR118C	PRX1	P34227	261 aa	Known RBP	4	□□□□□ -1.77
SHH3	YMR118C	SPR3	P41901	512 aa		4	□□□□□ -1.77
SHH3	YMR118C	SSL2	Q00578	843 aa		4	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 16.3 ms