RNA–Protein interactions for RNA: YGL006W

PMC1, Transcript of Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions, yeast

Gene PMC1, Length 3,522 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PMC1	YGL006W	SNU66	Q12420	587 aa	Predicted RBP	4.66	□□□□□ -1.66
PMC1	YGL006W	SRB4	P32569	687 aa		4.66	□□□□□ -1.66
PMC1	YGL006W	HOS4	P40480	1083 aa		4.66	□□□□□ -1.66
PMC1	YGL006W	PRY3	P47033	881 aa		4.66	□□□□□ -1.66
PMC1	YGL006W	ENP2	P48234	707 aa	Known RBP	4.66	□□□□□ -1.66
PMC1	YGL006W	ITT1	Q04638	464 aa		4.66	□□□□□ -1.66
PMC1	YGL006W	MATALPHA2	P0CY08	210 aa		4.66	□□□□□ -1.66
PMC1	YGL006W	HMLALPHA2	P0CY09	210 aa		4.66	□□□□□ -1.66
PMC1	YGL006W	PRP16	P15938	1071 aa	Predicted RBP	4.66	□□□□□ -1.66
PMC1	YGL006W	DPH5	P32469	300 aa	Predicted RBP	4.66	□□□□□ -1.66
PMC1	YGL006W	SET1	P38827	1080 aa	Known RBP	4.66	□□□□□ -1.66
PMC1	YGL006W	AKR1	P39010	764 aa		4.66	□□□□□ -1.66
PMC1	YGL006W	DAS1	P47005	663 aa		4.66	□□□□□ -1.66
PMC1	YGL006W	YJR079W	P47126	109 aa		4.66	□□□□□ -1.66
PMC1	YGL006W	SPO12	P17123	173 aa		4.65	□□□□□ -1.66
PMC1	YGL006W	PRP4	P20053	465 aa	Known RBP	4.65	□□□□□ -1.66
PMC1	YGL006W	SSE1	P32589	693 aa	Known RBP	4.65	□□□□□ -1.66
PMC1	YGL006W	SWI3	P32591	825 aa		4.65	□□□□□ -1.66
PMC1	YGL006W	LSC2	P53312	427 aa		4.65	□□□□□ -1.66
PMC1	YGL006W	GIR2	Q03768	265 aa	Predicted RBP	4.65	□□□□□ -1.66
PMC1	YGL006W	UTP5	Q04177	643 aa	Known RBP	4.65	□□□□□ -1.66
PMC1	YGL006W	UBX2	Q04228	584 aa		4.65	□□□□□ -1.66
PMC1	YGL006W	SOV1	Q04748	898 aa		4.65	□□□□□ -1.66
PMC1	YGL006W	SUP35	P05453	685 aa	Known RBP	4.65	□□□□□ -1.67
PMC1	YGL006W	ZRT2	Q12436	422 aa		4.65	□□□□□ -1.67
PMC1	YGL006W	TOM70	P07213	617 aa	Known RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	PGI1	P12709	554 aa	Known RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	PDC6	P26263	563 aa	Known RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	SHM1	P37292	490 aa	Predicted RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	RCR1	P38212	213 aa		4.64	□□□□□ -1.67
PMC1	YGL006W	CCT2	P39076	527 aa	Known RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	XKS1	P42826	600 aa		4.64	□□□□□ -1.67
PMC1	YGL006W	HGH1	P48362	394 aa	Known RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	YDR306C	Q06640	478 aa		4.64	□□□□□ -1.67
PMC1	YGL006W	SPO75	Q07798	868 aa		4.64	□□□□□ -1.67
PMC1	YGL006W	CMS1	Q07897	291 aa	Known RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	APL5	Q08951	932 aa	Known RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	RIO2	P40160	425 aa	Known RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	SNU71	P53207	620 aa	Known RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	VPS30	Q02948	557 aa		4.64	□□□□□ -1.67
PMC1	YGL006W	EST2	Q06163	884 aa		4.64	□□□□□ -1.67
PMC1	YGL006W	SPP382	Q06411	708 aa	Predicted RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	CWC2	Q12046	339 aa	Predicted RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	KRS1	P15180	591 aa	Known RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	NFU1	P32860	256 aa		4.64	□□□□□ -1.67
PMC1	YGL006W	CTM1	P38818	585 aa		4.64	□□□□□ -1.67
PMC1	YGL006W	SHQ1	P40486	507 aa	Predicted RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	SEC27	P41811	889 aa	Known RBP	4.64	□□□□□ -1.67
PMC1	YGL006W	ALD3	P54114	506 aa		4.64	□□□□□ -1.67
PMC1	YGL006W	ARD1	P07347	238 aa	Predicted RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	GCD2	P12754	651 aa	Predicted RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	GFA1	P14742	717 aa	Known RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	PHO13	P19881	312 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	SRP54	P20424	541 aa	Known RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	VPS1	P21576	704 aa	Known RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	VAN1	P23642	535 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	YEL043W	P32618	956 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	SEC8	P32855	1065 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	XRS2	P33301	854 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	YKR023W	P36119	530 aa	Known RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	ILM1	P47155	203 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	MCD4	P36051	919 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	MUD2	P36084	527 aa	Known RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	TPS3	P38426	1054 aa	Known RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	YAP5	P40574	245 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	INA22	P40576	216 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	YGR237C	P50089	785 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	TAN1	P53072	289 aa	Predicted RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	YBP2	P53169	641 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	ARG4	P04076	463 aa	Predicted RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	PRP5	P21372	849 aa	Predicted RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	OXP1	P28273	1286 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	RRP14	P36080	434 aa	Known RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	MSB3	P48566	633 aa	Predicted RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	ERP6	P53198	216 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	GTR1	Q00582	310 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	EBS1	Q03466	884 aa	Known RBP	4.63	□□□□□ -1.67
PMC1	YGL006W	MTC5	Q03897	1148 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	URH1	Q04179	340 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	GIS4	Q04233	774 aa		4.63	□□□□□ -1.67
PMC1	YGL006W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	not detected
PMC1	YGL006W	TUF1	P02992	437 aa	Known RBP	4.62	□□□□□ -1.67
PMC1	YGL006W	CDC6	P09119	513 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	STE11	P23561	717 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	CLB4	P24871	460 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	JNM1	P36224	373 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	FZO1	P38297	855 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	MCX1	P38323	520 aa	Predicted RBP	4.62	□□□□□ -1.67
PMC1	YGL006W	UBP6	P43593	499 aa	Known RBP	4.62	□□□□□ -1.67
PMC1	YGL006W	BOP3	P53958	396 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	RAD3	P06839	778 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	SEC18	P18759	758 aa	Known RBP	4.62	□□□□□ -1.67
PMC1	YGL006W	RAD51	P25454	400 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	BUD14	P27637	709 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	URA1	P28272	314 aa	Predicted RBP	4.62	□□□□□ -1.67
PMC1	YGL006W	SQT1	P35184	431 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	KIC1	P38692	1080 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	ERG5	P54781	538 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	YPL109C	Q02981	657 aa		4.62	□□□□□ -1.67
PMC1	YGL006W	STE23	Q06010	1027 aa		4.62	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 40.8 ms