RNA–Protein interactions for RNA: YFL003C

MSH4, Transcript of Protein involved in meiotic recombination, yeast

Gene MSH4, Length 2,637 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSH4	YFL003C	WRS1	Q12109	432 aa	Known RBP	4.16	□□□□□ -1.74
MSH4	YFL003C	DNA2	P38859	1522 aa		4.15	□□□□□ -1.74
MSH4	YFL003C	PEX28	P38848	579 aa		4.15	□□□□□ -1.74
MSH4	YFL003C	YJR124C	P47159	448 aa		4.15	□□□□□ -1.74
MSH4	YFL003C	PPT1	P53043	513 aa		4.15	□□□□□ -1.74
MSH4	YFL003C	YPL066W	Q12194	479 aa		4.15	□□□□□ -1.74
MSH4	YFL003C	KOG1	P38873	1557 aa		4.15	□□□□□ -1.75
MSH4	YFL003C	FUS1	P11710	512 aa		4.15	□□□□□ -1.75
MSH4	YFL003C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.75	not detected
MSH4	YFL003C	YKL091C	P33324	310 aa	Known RBP	4.15	□□□□□ -1.75
MSH4	YFL003C	YJL049W	P47048	450 aa		4.15	□□□□□ -1.75
MSH4	YFL003C	RAD4	P14736	754 aa		4.14	□□□□□ -1.75
MSH4	YFL003C	TYW3	P53177	273 aa		4.14	□□□□□ -1.75
MSH4	YFL003C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
MSH4	YFL003C	KRE33	P53914	1056 aa	Known RBP	4.14	□□□□□ -1.75
MSH4	YFL003C	CDC53	Q12018	815 aa	Known RBP	4.14	□□□□□ -1.75
MSH4	YFL003C	TRP2	P00899	507 aa	Known RBP	4.13	□□□□□ -1.75
MSH4	YFL003C	PMT7	Q06644	662 aa		4.13	□□□□□ -1.75
MSH4	YFL003C	TIM23	P32897	222 aa		4.13	□□□□□ -1.75
MSH4	YFL003C	PRK1	P40494	810 aa		4.13	□□□□□ -1.75
MSH4	YFL003C	ATG36	P46983	293 aa		4.13	□□□□□ -1.75
MSH4	YFL003C	MRL1	Q06815	381 aa		4.13	□□□□□ -1.75
MSH4	YFL003C	HTS1	P07263	546 aa	Known RBP	4.12	□□□□□ -1.75
MSH4	YFL003C	KAR2	P16474	682 aa	Known RBP	4.12	□□□□□ -1.75
MSH4	YFL003C	YBR184W	P38299	523 aa		4.12	□□□□□ -1.75
MSH4	YFL003C	LSB6	P42951	607 aa		4.12	□□□□□ -1.75
MSH4	YFL003C	CWC24	P53769	259 aa		4.12	□□□□□ -1.75
MSH4	YFL003C	CUZ1	P53899	274 aa		4.12	□□□□□ -1.75
MSH4	YFL003C	PEX13	P80667	386 aa		4.12	□□□□□ -1.75
MSH4	YFL003C	ROD1	Q02805	837 aa		4.12	□□□□□ -1.75
MSH4	YFL003C	SRF1	Q12516	437 aa		4.12	□□□□□ -1.75
MSH4	YFL003C	ERR1	P0CX10	437 aa		4.12	□□□□□ -1.75
MSH4	YFL003C	ERR2	P0CX11	437 aa		4.12	□□□□□ -1.75
MSH4	YFL003C	ABD1	P32783	436 aa	Predicted RBP	4.12	□□□□□ -1.75
MSH4	YFL003C	SIW14	P53965	281 aa		4.12	□□□□□ -1.75
MSH4	YFL003C	DIT1	P21623	536 aa		4.11	□□□□□ -1.75
MSH4	YFL003C	AFG2	P32794	780 aa		4.11	□□□□□ -1.75
MSH4	YFL003C	NCL1	P38205	684 aa	Known RBP	4.11	□□□□□ -1.75
MSH4	YFL003C	YJL181W	P46987	611 aa		4.11	□□□□□ -1.75
MSH4	YFL003C	UBP2	Q01476	1272 aa		4.11	□□□□□ -1.75
MSH4	YFL003C	TY1A-MR1	Q04215	440 aa		4.11	□□□□□ -1.75
MSH4	YFL003C	YLR225C	Q05948	407 aa	Known RBP	4.11	□□□□□ -1.75
MSH4	YFL003C	TDA5	Q06417	326 aa	Known RBP	4.11	□□□□□ -1.75
MSH4	YFL003C	FLC1	Q08967	793 aa		4.11	□□□□□ -1.75
MSH4	YFL003C	MKK2	P32491	506 aa		4.11	□□□□□ -1.75
MSH4	YFL003C	MAL11	P53048	616 aa		4.11	□□□□□ -1.75
MSH4	YFL003C	RAT1	Q02792	1006 aa	Known RBP	4.11	□□□□□ -1.75
MSH4	YFL003C	TY1A-DR2	Q03964	440 aa	Known RBP	4.11	□□□□□ -1.75
MSH4	YFL003C	SOG2	Q08817	791 aa		4.11	□□□□□ -1.75
MSH4	YFL003C	BAS1	P22035	811 aa		4.1	□□□□□ -1.75
MSH4	YFL003C	RPL8B	P29453	256 aa	Known RBP	4.1	□□□□□ -1.75
MSH4	YFL003C	VBA5	P36172	582 aa		4.1	□□□□□ -1.75
MSH4	YFL003C	NEM1	P38757	446 aa		4.1	□□□□□ -1.75
MSH4	YFL003C	RSP5	P39940	809 aa	Known RBP	4.1	□□□□□ -1.75
MSH4	YFL003C	SLS1	P42900	643 aa		4.1	□□□□□ -1.75
MSH4	YFL003C	NCE103	P53615	221 aa		4.1	□□□□□ -1.75
MSH4	YFL003C	RRP14	P36080	434 aa	Known RBP	4.1	□□□□□ -1.75
MSH4	YFL003C	GLY1	P37303	387 aa	Known RBP	4.1	□□□□□ -1.75
MSH4	YFL003C	NUP82	P40368	713 aa		4.1	□□□□□ -1.75
MSH4	YFL003C	HAS1	Q03532	505 aa	Known RBP	4.1	□□□□□ -1.75
MSH4	YFL003C	TIF35	Q04067	274 aa	Known RBP	4.1	□□□□□ -1.75
MSH4	YFL003C	AGP1	P25376	633 aa		4.09	□□□□□ -1.75
MSH4	YFL003C	ROG3	P43602	733 aa		4.09	□□□□□ -1.75
MSH4	YFL003C	RSM26	P47141	266 aa		4.09	□□□□□ -1.75
MSH4	YFL003C	UTP5	Q04177	643 aa	Known RBP	4.09	□□□□□ -1.75
MSH4	YFL003C	CAN1	P04817	590 aa		4.09	□□□□□ -1.75
MSH4	YFL003C	PPG1	P32838	368 aa		4.09	□□□□□ -1.75
MSH4	YFL003C	BET3	P36149	193 aa		4.09	□□□□□ -1.75
MSH4	YFL003C	SYT1	Q06836	1226 aa		4.09	□□□□□ -1.75
MSH4	YFL003C	FAL1	Q12099	399 aa	Known RBP	4.09	□□□□□ -1.75
MSH4	YFL003C	YBR287W	P38355	427 aa		4.08	□□□□□ -1.76
MSH4	YFL003C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
MSH4	YFL003C	SHE9	Q04172	456 aa		4.08	□□□□□ -1.76
MSH4	YFL003C	TRK1	P12685	1235 aa		4.08	□□□□□ -1.76
MSH4	YFL003C	VMA4	P22203	233 aa	Known RBP	4.08	□□□□□ -1.76
MSH4	YFL003C	MOT2	P34909	587 aa	Known RBP	4.08	□□□□□ -1.76
MSH4	YFL003C	SIP5	P40210	489 aa	Known RBP	4.08	□□□□□ -1.76
MSH4	YFL003C	LYS5	P50113	272 aa		4.08	□□□□□ -1.76
MSH4	YFL003C	RTA1	P53047	317 aa		4.08	□□□□□ -1.76
MSH4	YFL003C	HEH2	Q03281	663 aa		4.08	□□□□□ -1.76
MSH4	YFL003C	FMP25	Q08023	583 aa		4.08	□□□□□ -1.76
MSH4	YFL003C	TIM54	P47045	478 aa		4.08	□□□□□ -1.76
MSH4	YFL003C	YJR142W	P47173	342 aa		4.08	□□□□□ -1.76
MSH4	YFL003C	NAN1	Q02931	896 aa	Known RBP	4.08	□□□□□ -1.76
MSH4	YFL003C	TAF8	Q03750	510 aa		4.08	□□□□□ -1.76
MSH4	YFL003C	YIG1	Q08956	461 aa		4.08	□□□□□ -1.76
MSH4	YFL003C	TMA46	Q12000	345 aa	Known RBP	4.08	□□□□□ -1.76
MSH4	YFL003C	MET22	P32179	357 aa		4.07	□□□□□ -1.76
MSH4	YFL003C	ECM2	P38241	364 aa	Known RBP	4.07	□□□□□ -1.76
MSH4	YFL003C	YDR461C-A	Q2V2P7	80 aa		4.07	□□□□□ -1.76
MSH4	YFL003C	TAF13	P11747	167 aa		4.07	□□□□□ -1.76
MSH4	YFL003C	GRX4	P32642	244 aa		4.07	□□□□□ -1.76
MSH4	YFL003C	MPH1	P40562	993 aa		4.07	□□□□□ -1.76
MSH4	YFL003C	SWR1	Q05471	1514 aa		4.06	□□□□□ -1.76
MSH4	YFL003C	LYP1	P32487	611 aa		4.06	□□□□□ -1.76
MSH4	YFL003C	SQT1	P35184	431 aa		4.06	□□□□□ -1.76
MSH4	YFL003C	MBP1	P39678	833 aa		4.06	□□□□□ -1.76
MSH4	YFL003C	POL5	P39985	1022 aa	Known RBP	4.06	□□□□□ -1.76
MSH4	YFL003C	YIR007W	P40566	764 aa		4.06	□□□□□ -1.76
MSH4	YFL003C	LCB5	Q06147	687 aa	Known RBP	4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 113.2 ms