RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 TOM1L2Q6ZVM7 507 aa24.88■■□□□ 1.57
CLN3-247ENST00000636351 OVOS2A0A0G2JMS6 1433 aa24.87■■□□□ 1.57
CLN3-247ENST00000636351 OVOS2A0A0J9YW53 1432 aa24.87■■□□□ 1.57
CLN3-247ENST00000636351 OVOS2Q6IE36 1432 aa24.87■■□□□ 1.57
CLN3-247ENST00000636351 HSPA5P11021 654 aaKnown RBP24.87■■□□□ 1.57
CLN3-247ENST00000636351 TTC21BQ7Z4L5 1316 aa24.86■■□□□ 1.57
CLN3-247ENST00000636351 LRRC37A3O60309 1634 aa24.86■■□□□ 1.57
CLN3-247ENST00000636351 NBPF14Q5TI25 921 aa24.86■■□□□ 1.57
CLN3-247ENST00000636351 AXIN2Q9Y2T1 843 aa24.86■■□□□ 1.57
CLN3-247ENST00000636351 CPSF1Q10570 1443 aaKnown RBP24.86■■□□□ 1.57
CLN3-247ENST00000636351 DDB1Q16531 1140 aa24.85■■□□□ 1.57
CLN3-247ENST00000636351 COL18A1P39060 1754 aa24.85■■□□□ 1.57
CLN3-247ENST00000636351 PEAK1Q9H792 1746 aa24.84■■□□□ 1.57
CLN3-247ENST00000636351 C11orf95C9JLR9 678 aaPredicted RBP24.84■■□□□ 1.57
CLN3-247ENST00000636351 ZNF692Q9BU19 519 aaPredicted RBP24.84■■□□□ 1.57
CLN3-247ENST00000636351 WDR17Q8IZU2 1322 aa24.84■■□□□ 1.57
CLN3-247ENST00000636351 SOX12O15370 315 aa24.83■■□□□ 1.57
CLN3-247ENST00000636351 ARHGEF25Q86VW2 580 aa24.82■■□□□ 1.56
CLN3-247ENST00000636351 TMC1Q8TDI8 760 aa24.82■■□□□ 1.56
CLN3-247ENST00000636351 AKAP12Q02952 1782 aa24.82■■□□□ 1.56
CLN3-247ENST00000636351 KCNH5Q8NCM2 988 aa24.81■■□□□ 1.56
CLN3-247ENST00000636351 TTC21AQ8NDW8 1320 aa24.81■■□□□ 1.56
CLN3-247ENST00000636351 CDCA8Q53HL2 280 aa24.8■■□□□ 1.56
CLN3-247ENST00000636351 WNK3Q9BYP7 1800 aa24.79■■□□□ 1.56
CLN3-247ENST00000636351 KTN1Q86UP2 1357 aaKnown RBP24.79■■□□□ 1.56
CLN3-247ENST00000636351 CSB-PGBD3P0DP91 1061 aa24.78■■□□□ 1.56
CLN3-247ENST00000636351 PUS7Q96PZ0 661 aaKnown RBP24.78■■□□□ 1.56
CLN3-247ENST00000636351 NFAT5O94916 1531 aa24.76■■□□□ 1.55
CLN3-247ENST00000636351 PTF1AQ7RTS3 328 aa24.76■■□□□ 1.55
CLN3-247ENST00000636351 MARCH10Q8NA82 808 aaPredicted RBP24.76■■□□□ 1.55
CLN3-247ENST00000636351 POLR3GLQ9BT43 218 aa24.76■■□□□ 1.55
CLN3-247ENST00000636351 CDCA7Q9BWT1 371 aaPredicted RBP24.76■■□□□ 1.55
CLN3-247ENST00000636351 PLSCR1O15162 318 aa24.75■■□□□ 1.55
CLN3-247ENST00000636351 CARD10Q9BWT7 1032 aa24.75■■□□□ 1.55
CLN3-247ENST00000636351 BCL11BQ9C0K0 894 aaPredicted RBP24.75■■□□□ 1.55
CLN3-247ENST00000636351 NINLQ9Y2I6 1382 aa24.74■■□□□ 1.55
CLN3-247ENST00000636351 RGPD3A6NKT7 1758 aaPredicted RBP24.74■■□□□ 1.55
CLN3-247ENST00000636351 RGPD4Q7Z3J3 1758 aa24.74■■□□□ 1.55
CLN3-247ENST00000636351 SBF2Q86WG5 1849 aa24.74■■□□□ 1.55
CLN3-247ENST00000636351 RGPD5Q99666 1765 aa24.73■■□□□ 1.55
CLN3-247ENST00000636351 SLC12A5Q9H2X9 1139 aa24.73■■□□□ 1.55
CLN3-247ENST00000636351 HDGFL2Q7Z4V5 671 aaPredicted RBP24.72■■□□□ 1.55
CLN3-247ENST00000636351 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.72■■□□□ 1.55
CLN3-247ENST00000636351 SPON1Q9HCB6 807 aa24.72■■□□□ 1.55
CLN3-247ENST00000636351 MON2Q7Z3U7 1717 aa24.72■■□□□ 1.55
CLN3-247ENST00000636351 BCL9O00512 1426 aa24.71■■□□□ 1.55
CLN3-247ENST00000636351 ANO8Q9HCE9 1232 aaPredicted RBP24.71■■□□□ 1.55
CLN3-247ENST00000636351 TERF2IPQ9NYB0 399 aa24.71■■□□□ 1.55
CLN3-247ENST00000636351 KCNQ2O43526 872 aa24.7■■□□□ 1.54
CLN3-247ENST00000636351 ABCC6O95255 1503 aa24.7■■□□□ 1.54
CLN3-247ENST00000636351 CCDC7Q96M83 1385 aa24.69■■□□□ 1.54
CLN3-247ENST00000636351 ZEB1P37275 1124 aaPredicted RBP24.69■■□□□ 1.54
CLN3-247ENST00000636351 PPP1R1BQ9UD71 204 aaPredicted RBP24.69■■□□□ 1.54
CLN3-247ENST00000636351 CD163L1Q9NR16 1453 aa24.69■■□□□ 1.54
CLN3-247ENST00000636351 USP31Q70CQ4 1352 aa24.68■■□□□ 1.54
CLN3-247ENST00000636351 EXOC5O00471 708 aa24.68■■□□□ 1.54
CLN3-247ENST00000636351 NME9Q86XW9 330 aa24.68■■□□□ 1.54
CLN3-247ENST00000636351 A0A1W2PP64 1363 aa24.67■■□□□ 1.54
CLN3-247ENST00000636351 PROM2Q8N271 834 aa24.67■■□□□ 1.54
CLN3-247ENST00000636351 TNS2Q63HR2 1409 aa24.66■■□□□ 1.54
CLN3-247ENST00000636351 USP54Q70EL1 1684 aa24.65■■□□□ 1.54
CLN3-247ENST00000636351 ERBB3P21860 1342 aa24.63■■□□□ 1.53
CLN3-247ENST00000636351 ANKRD36BQ8N2N9 1353 aa24.63■■□□□ 1.53
CLN3-247ENST00000636351 MYOM1P52179 1685 aa24.62■■□□□ 1.53
CLN3-247ENST00000636351 CASZ1Q86V15 1759 aa24.62■■□□□ 1.53
CLN3-247ENST00000636351 EDC4Q6P2E9 1401 aaKnown RBP24.62■■□□□ 1.53
CLN3-247ENST00000636351 PDGFDQ9GZP0 370 aaPredicted RBP24.62■■□□□ 1.53
CLN3-247ENST00000636351 NLRP2Q9NX02 1062 aa24.62■■□□□ 1.53
CLN3-247ENST00000636351 TXNRD1Q16881 649 aa24.61■■□□□ 1.53
CLN3-247ENST00000636351 LTN1O94822 1766 aa24.59■■□□□ 1.53
CLN3-247ENST00000636351 ZBTB7AO95365 584 aa24.58■■□□□ 1.53
CLN3-247ENST00000636351 ANKRD24Q8TF21 1146 aa24.58■■□□□ 1.53
CLN3-247ENST00000636351 ACSBG1Q96GR2 724 aa24.58■■□□□ 1.53
CLN3-247ENST00000636351 STK32BQ9NY57 414 aa24.58■■□□□ 1.53
CLN3-247ENST00000636351 NHSQ6T4R5 1651 aa24.57■■□□□ 1.52
CLN3-247ENST00000636351 IL2RBP14784 551 aa24.57■■□□□ 1.52
CLN3-247ENST00000636351 KIF7Q2M1P5 1343 aa24.57■■□□□ 1.52
CLN3-247ENST00000636351 YY1P25490 414 aa24.56■■□□□ 1.52
CLN3-247ENST00000636351 SLC15A2Q16348 729 aa24.55■■□□□ 1.52
CLN3-247ENST00000636351 DCAF8L1A6NGE4 600 aa24.53■■□□□ 1.52
CLN3-247ENST00000636351 NSD3Q9BZ95 1437 aa24.52■■□□□ 1.52
CLN3-247ENST00000636351 PTGER2P43116 358 aa24.52■■□□□ 1.52
CLN3-247ENST00000636351 ATF5Q9Y2D1 282 aaPredicted RBP24.52■■□□□ 1.52
CLN3-247ENST00000636351 IP6K1Q92551 441 aa24.48■■□□□ 1.51
CLN3-247ENST00000636351 LTV1Q96GA3 475 aaPredicted RBP24.48■■□□□ 1.51
CLN3-247ENST00000636351 WASHC2AQ641Q2 1341 aa24.47■■□□□ 1.51
CLN3-247ENST00000636351 PANK3Q9H999 370 aa24.47■■□□□ 1.51
CLN3-247ENST00000636351 PAPPAQ13219 1627 aa24.46■■□□□ 1.51
CLN3-247ENST00000636351 CARD14Q9BXL6 1004 aa24.46■■□□□ 1.51
CLN3-247ENST00000636351 MTFR1LQ9H019 292 aa24.46■■□□□ 1.51
CLN3-247ENST00000636351 BTAF1O14981 1849 aa24.45■■□□□ 1.5
CLN3-247ENST00000636351 COG3Q96JB2 828 aa24.45■■□□□ 1.5
CLN3-247ENST00000636351 KIF20BQ96Q89 1820 aa24.45■■□□□ 1.5
CLN3-247ENST00000636351 DDX54Q8TDD1 881 aaKnown RBP24.43■■□□□ 1.5
CLN3-247ENST00000636351 GGNBP2Q9H3C7 697 aa24.43■■□□□ 1.5
CLN3-247ENST00000636351 FAM208AQ9UK61 1670 aaKnown RBP24.43■■□□□ 1.5
CLN3-247ENST00000636351 CGNL1Q0VF96 1302 aa24.42■■□□□ 1.5
CLN3-247ENST00000636351 MAP3K19Q56UN5 1328 aa24.42■■□□□ 1.5
CLN3-247ENST00000636351 FHDC1Q9C0D6 1143 aaPredicted RBP24.42■■□□□ 1.5
CLN3-247ENST00000636351 FBLN1P23142 703 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 271.2 ms