RNA–Protein interactions for RNA: ENST00000635120.1

CSMD1-218, Transcript of CUB and Sushi multiple domains 1, human

APPRIS P2 TSL 5 BASIC

Gene CSMD1, Length 11,737 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-218	ENST00000635120	EIF3J	O75822	258 aa	Known RBP	10.78	□□□□□ -0.68
CSMD1-218	ENST00000635120	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	10.78	□□□□□ -0.68	2e-6	■■■■■ 29.1
CSMD1-218	ENST00000635120	GRPEL1	Q9HAV7	217 aa		10.78	□□□□□ -0.68
CSMD1-218	ENST00000635120	WASHC2A	Q641Q2	1341 aa		10.78	□□□□□ -0.68
CSMD1-218	ENST00000635120	TSR2	Q969E8	191 aa	Known RBP	10.78	□□□□□ -0.68
CSMD1-218	ENST00000635120	GNL3L	Q9NVN8	582 aa	Known RBP	10.77	□□□□□ -0.68
CSMD1-218	ENST00000635120	AEBP1	Q8IUX7	1158 aa		10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	SIL1	Q9H173	461 aa		10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	SEPT11	Q9NVA2	429 aa	Known RBP	10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	ERLIN1	O75477	346 aa		10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	ANKRD1	Q15327	319 aa		10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	WWC2	Q6AWC2	1192 aa		10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	TXLNB	Q8N3L3	684 aa		10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	SCAPER	Q9BY12	1400 aa		10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	KRT85	P78386	507 aa		10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	DHX8	Q14562	1220 aa	Known RBP	10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	LRRFIP2	Q9Y608	721 aa	Known RBP	10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	HECW1	Q76N89	1606 aa		10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	PRKAR2B	P31323	418 aa		10.77	□□□□□ -0.69
CSMD1-218	ENST00000635120	WDR97	A6NE52	1622 aa		10.76	□□□□□ -0.69
CSMD1-218	ENST00000635120		K7ELQ4	463 aa	Predicted RBP	10.76	□□□□□ -0.69
CSMD1-218	ENST00000635120	TANGO6	Q9C0B7	1094 aa		10.76	□□□□□ -0.69
CSMD1-218	ENST00000635120	CADPS	Q9ULU8	1353 aa		10.76	□□□□□ -0.69
CSMD1-218	ENST00000635120	CNNM1	Q9NRU3	951 aa		10.76	□□□□□ -0.69
CSMD1-218	ENST00000635120	EZR	P15311	586 aa	Known RBP	10.76	□□□□□ -0.69
CSMD1-218	ENST00000635120	FGD5	Q6ZNL6	1462 aa		10.76	□□□□□ -0.69
CSMD1-218	ENST00000635120	TMEM132E	Q6IEE7	984 aa		10.76	□□□□□ -0.69
CSMD1-218	ENST00000635120	ANKRD18A	Q8IVF6	992 aa		10.76	□□□□□ -0.69
CSMD1-218	ENST00000635120	DACH1	Q9UI36	760 aa		10.76	□□□□□ -0.69
CSMD1-218	ENST00000635120	ABTB2	Q8N961	1025 aa		10.76	□□□□□ -0.69
CSMD1-218	ENST00000635120	CBFA2T2	O43439	604 aa		10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	ERICH3	Q5RHP9	1530 aa		10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	ANKRD50	Q9ULJ7	1429 aa		10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	GBP2	P32456	591 aa	Predicted RBP	10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	GAS2L2	Q8NHY3	880 aa		10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	CCDC69	A6NI79	296 aa		10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	NLRP6	P59044	892 aa		10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	LRRCC1	Q9C099	1032 aa		10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	PDCL3	Q9H2J4	239 aa		10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	RRP9	O43818	475 aa	Known RBP	10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	LARP1B	Q659C4	914 aa	Known RBP	10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	NCOA2	Q15596	1464 aa		10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	TWISTNB	Q3B726	338 aa	Predicted RBP	10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	GCC1	Q96CN9	775 aa		10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	INCENP	Q9NQS7	918 aa		10.75	□□□□□ -0.69
CSMD1-218	ENST00000635120	NUP133	Q8WUM0	1156 aa		10.74	□□□□□ -0.69
CSMD1-218	ENST00000635120	SPATA32	Q96LK8	384 aa		10.74	□□□□□ -0.69
CSMD1-218	ENST00000635120	PPP2R1A	P30153	589 aa		10.74	□□□□□ -0.69
CSMD1-218	ENST00000635120	GPRASP1	Q5JY77	1395 aa		10.74	□□□□□ -0.69
CSMD1-218	ENST00000635120	KIAA1328	Q86T90	577 aa		10.74	□□□□□ -0.69
CSMD1-218	ENST00000635120	CEP57L1	Q8IYX8	460 aa		10.74	□□□□□ -0.69
CSMD1-218	ENST00000635120	EXOSC9	Q06265	439 aa	Known RBP	10.74	□□□□□ -0.69
CSMD1-218	ENST00000635120	CCDC158	Q5M9N0	1113 aa		10.74	□□□□□ -0.69
CSMD1-218	ENST00000635120	ZNF644	Q9H582	1327 aa	Predicted RBP	10.74	□□□□□ -0.69
CSMD1-218	ENST00000635120	CCT4	P50991	539 aa	Known RBP	10.74	□□□□□ -0.69
CSMD1-218	ENST00000635120	NACAP1	Q9BZK3	213 aa		10.74	□□□□□ -0.69
CSMD1-218	ENST00000635120	CCDC102A	Q96A19	550 aa		10.73	□□□□□ -0.69
CSMD1-218	ENST00000635120	AACS	Q86V21	672 aa		10.73	□□□□□ -0.69
CSMD1-218	ENST00000635120	HDGFL1	Q5TGJ6	251 aa		10.73	□□□□□ -0.69
CSMD1-218	ENST00000635120	SSB	P05455	408 aa	Known RBP eCLIP	10.73	□□□□□ -0.69
CSMD1-218	ENST00000635120	PDE3A	Q14432	1141 aa		10.73	□□□□□ -0.69
CSMD1-218	ENST00000635120	CDKL5	O76039	1030 aa		10.73	□□□□□ -0.69
CSMD1-218	ENST00000635120	TAF3	Q5VWG9	929 aa		10.73	□□□□□ -0.69
CSMD1-218	ENST00000635120	SLC4A2	P04920	1241 aa		10.72	□□□□□ -0.69
CSMD1-218	ENST00000635120	BCAR3	O75815	825 aa		10.72	□□□□□ -0.69
CSMD1-218	ENST00000635120	NUP62CL	Q9H1M0	184 aa		10.72	□□□□□ -0.69
CSMD1-218	ENST00000635120	SYCE3	A1L190	88 aa		10.72	□□□□□ -0.69
CSMD1-218	ENST00000635120	EHBP1L1	Q8N3D4	1523 aa		10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	CAST	P20810	708 aa	Known RBP	10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	PLEKHO1	Q53GL0	409 aa	Predicted RBP	10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	ZMYND15	Q9H091	742 aa		10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	EPB41L2	O43491	1005 aa	Known RBP	10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	FKBP4	Q02790	459 aa	Known RBP eCLIP	10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	JAKMIP1	Q96N16	626 aa	Known RBP	10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	RBM42	Q9BTD8	480 aa	Known RBP	10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	UPF3B	Q9BZI7	483 aa	Known RBP	10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	ZHX1	Q9UKY1	873 aa	Predicted RBP	10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	BACH2	Q9BYV9	841 aa		10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	PDRG1	Q9NUG6	133 aa		10.71	□□□□□ -0.69
CSMD1-218	ENST00000635120	GON4L	Q3T8J9	2241 aa		10.71	□□□□□ -0.7
CSMD1-218	ENST00000635120	SSR1	P43307	286 aa	Known RBP	10.71	□□□□□ -0.7
CSMD1-218	ENST00000635120	CFAP45	Q9UL16	551 aa		10.71	□□□□□ -0.7
CSMD1-218	ENST00000635120	MATR3	P43243	847 aa	Known RBP eCLIP	10.71	□□□□□ -0.7
CSMD1-218	ENST00000635120	NOL7	Q9UMY1	257 aa	Known RBP	10.71	□□□□□ -0.7
CSMD1-218	ENST00000635120	ESPN	B1AK53	854 aa		10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	CWC27	Q6UX04	472 aa	Known RBP	10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	CHD1L	Q86WJ1	897 aa		10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	PIBF1	Q8WXW3	757 aa		10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	TDO2	P48775	406 aa		10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	BLOC1S2	Q6QNY1	142 aa		10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	ARHGAP29	Q52LW3	1261 aa		10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	CFTR	P13569	1480 aa		10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	STRN4	Q9NRL3	753 aa		10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	FILIP1	Q7Z7B0	1213 aa		10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	SRCIN1	Q9C0H9	1055 aa		10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	MPHOSPH8	Q99549	860 aa		10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	UBAC1	Q9BSL1	405 aa		10.7	□□□□□ -0.7
CSMD1-218	ENST00000635120	MYL6B	P14649	208 aa		10.69	□□□□□ -0.7
CSMD1-218	ENST00000635120	USP8	P40818	1118 aa		10.69	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms