RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 KIF1BO60333 1816 aa9.39□□□□□ -0.91
TCF4-249ENST00000625716 ADAMTS13Q76LX8 1427 aa9.39□□□□□ -0.91
TCF4-249ENST00000625716 HRCP23327 699 aa9.38□□□□□ -0.91
TCF4-249ENST00000625716 FBXW7Q969H0 707 aa9.38□□□□□ -0.91
TCF4-249ENST00000625716 CFAP44Q96MT7 982 aa9.38□□□□□ -0.91
TCF4-249ENST00000625716 ATF3P18847 181 aa9.37□□□□□ -0.91
TCF4-249ENST00000625716 C6orf132Q5T0Z8 1188 aa9.37□□□□□ -0.91
TCF4-249ENST00000625716 DDX12PQ92771 950 aa9.37□□□□□ -0.91
TCF4-249ENST00000625716 NWD1Q149M9 1564 aa9.37□□□□□ -0.91
TCF4-249ENST00000625716 DISP3Q9P2K9 1392 aa9.37□□□□□ -0.91
TCF4-249ENST00000625716 NEXMIFQ5QGS0 1516 aa9.36□□□□□ -0.91
TCF4-249ENST00000625716 PTPN5P54829 565 aa9.36□□□□□ -0.91
TCF4-249ENST00000625716 THSD4Q6ZMP0 1018 aa9.36□□□□□ -0.91
TCF4-249ENST00000625716 MRPL50Q8N5N7 158 aaKnown RBP9.36□□□□□ -0.91
TCF4-249ENST00000625716 EPAS1Q99814 870 aa9.36□□□□□ -0.91
TCF4-249ENST00000625716 C19orf44Q9H6X5 657 aa9.36□□□□□ -0.91
TCF4-249ENST00000625716 SLAIN2Q9P270 581 aa9.36□□□□□ -0.91
TCF4-249ENST00000625716 NCOA3Q9Y6Q9 1424 aa9.36□□□□□ -0.91
TCF4-249ENST00000625716 PDIA6Q15084 440 aa9.35□□□□□ -0.91
TCF4-249ENST00000625716 RABGEF1Q9UJ41 708 aa9.35□□□□□ -0.91
TCF4-249ENST00000625716 SETBP1Q9Y6X0 1596 aa9.35□□□□□ -0.91
TCF4-249ENST00000625716 CHD2O14647 1828 aaKnown RBP9.35□□□□□ -0.91
TCF4-249ENST00000625716 FAM135BQ49AJ0 1406 aa9.34□□□□□ -0.91
TCF4-249ENST00000625716 WNT2BQ93097 391 aa9.34□□□□□ -0.91
TCF4-249ENST00000625716 METP08581 1390 aa9.34□□□□□ -0.91
TCF4-249ENST00000625716 ANKRD30BQ9BXX2 1392 aa9.34□□□□□ -0.91
TCF4-249ENST00000625716 PTPRUQ92729 1446 aa9.33□□□□□ -0.92
TCF4-249ENST00000625716 PRIM1P49642 420 aaKnown RBP9.33□□□□□ -0.92
TCF4-249ENST00000625716 XIRP1Q702N8 1843 aaKnown RBP9.33□□□□□ -0.92
TCF4-249ENST00000625716 ALKQ9UM73 1620 aa9.32□□□□□ -0.92
TCF4-249ENST00000625716 E2F4Q16254 413 aa9.32□□□□□ -0.92
TCF4-249ENST00000625716 KIAA1468Q9P260 1216 aa9.32□□□□□ -0.92
TCF4-249ENST00000625716 ARIH1Q9Y4X5 557 aaPredicted RBP9.32□□□□□ -0.92
TCF4-249ENST00000625716 ADGRF5Q8IZF2 1346 aa9.31□□□□□ -0.92
TCF4-249ENST00000625716 SPATA31E1Q6ZUB1 1445 aa9.31□□□□□ -0.92
TCF4-249ENST00000625716 NRXN3Q9Y4C0 1643 aa9.31□□□□□ -0.92
TCF4-249ENST00000625716 NBPF3Q9H094 633 aa9.31□□□□□ -0.92
TCF4-249ENST00000625716 GOLGA8CPA6NN73 597 aa9.3□□□□□ -0.92
TCF4-249ENST00000625716 TSR1Q2NL82 804 aaKnown RBP9.3□□□□□ -0.92
TCF4-249ENST00000625716 STK26Q9P289 416 aa9.3□□□□□ -0.92
TCF4-249ENST00000625716 PPLO60437 1756 aa9.29□□□□□ -0.92
TCF4-249ENST00000625716 SPDYE16A6NNV3 312 aaPredicted RBP9.29□□□□□ -0.92
TCF4-249ENST00000625716 ONECUT3O60422 494 aaPredicted RBP9.29□□□□□ -0.92
TCF4-249ENST00000625716 EN1Q05925 392 aaPredicted RBP9.29□□□□□ -0.92
TCF4-249ENST00000625716 KDM2AQ9Y2K7 1162 aa9.29□□□□□ -0.92
TCF4-249ENST00000625716 XRN1Q8IZH2 1706 aaKnown RBP9.28□□□□□ -0.92
TCF4-249ENST00000625716 NBR1Q14596 966 aa9.28□□□□□ -0.92
TCF4-249ENST00000625716 DCAF11Q8TEB1 546 aa9.28□□□□□ -0.92
TCF4-249ENST00000625716 ROBO1Q9Y6N7 1651 aa9.28□□□□□ -0.92
TCF4-249ENST00000625716 DCCP43146 1447 aa9.28□□□□□ -0.92
TCF4-249ENST00000625716 ROBO2Q9HCK4 1378 aa9.27□□□□□ -0.93
TCF4-249ENST00000625716 TRIM6-TRIM34B2RNG4 842 aa9.27□□□□□ -0.93
TCF4-249ENST00000625716 TMEM132EQ6IEE7 984 aa9.27□□□□□ -0.93
TCF4-249ENST00000625716 PTCH1Q13635 1447 aa9.27□□□□□ -0.93
TCF4-249ENST00000625716 ADGRL3Q9HAR2 1447 aa9.27□□□□□ -0.93
TCF4-249ENST00000625716 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.27□□□□□ -0.93
TCF4-249ENST00000625716 DHX57Q6P158 1386 aaKnown RBP9.26□□□□□ -0.93
TCF4-249ENST00000625716 PIK3C2GO75747 1445 aa9.26□□□□□ -0.93
TCF4-249ENST00000625716 CFAP70Q5T0N1 1121 aa9.26□□□□□ -0.93
TCF4-249ENST00000625716 BRINP3Q76B58 766 aa9.26□□□□□ -0.93
TCF4-249ENST00000625716 C14orf93Q9H972 538 aaKnown RBP9.26□□□□□ -0.93
TCF4-249ENST00000625716 SEPT9Q9UHD8 586 aaPredicted RBP9.26□□□□□ -0.93
TCF4-249ENST00000625716 LRPPRCP42704 1394 aaKnown RBP9.25□□□□□ -0.93
TCF4-249ENST00000625716 BCAMP50895 628 aa9.25□□□□□ -0.93
TCF4-249ENST00000625716 LAPTM4BQ86VI4 370 aa9.25□□□□□ -0.93
TCF4-249ENST00000625716 ZFRQ96KR1 1074 aaKnown RBP9.25□□□□□ -0.93
TCF4-249ENST00000625716 TSHZ2Q9NRE2 1034 aa9.25□□□□□ -0.93
TCF4-249ENST00000625716 TSKSQ9UJT2 592 aa9.25□□□□□ -0.93
TCF4-249ENST00000625716 MYOM2P54296 1465 aa9.25□□□□□ -0.93
TCF4-249ENST00000625716 ABCC11Q96J66 1382 aa9.24□□□□□ -0.93
TCF4-249ENST00000625716 JCADQ9P266 1359 aa9.24□□□□□ -0.93
TCF4-249ENST00000625716 WAPLQ7Z5K2 1190 aa9.24□□□□□ -0.93
TCF4-249ENST00000625716 WDR70Q9NW82 654 aa9.24□□□□□ -0.93
TCF4-249ENST00000625716 POGKQ9P215 609 aa9.24□□□□□ -0.93
TCF4-249ENST00000625716 FAM198AQ9UFP1 575 aa9.24□□□□□ -0.93
TCF4-249ENST00000625716 MED1Q15648 1581 aaPredicted RBP9.24□□□□□ -0.93
TCF4-249ENST00000625716 MST1RQ04912 1400 aa9.23□□□□□ -0.93
TCF4-249ENST00000625716 YTHDC2Q9H6S0 1430 aaKnown RBP9.23□□□□□ -0.93
TCF4-249ENST00000625716 SETD1AO15047 1707 aaKnown RBP9.23□□□□□ -0.93
TCF4-249ENST00000625716 PHLPP1O60346 1717 aa9.23□□□□□ -0.93
TCF4-249ENST00000625716 IFT172Q9UG01 1749 aa9.23□□□□□ -0.93
TCF4-249ENST00000625716 SOWAHBA6NEL2 793 aa9.23□□□□□ -0.93
TCF4-249ENST00000625716 C3orf80F5H4A9 247 aa9.23□□□□□ -0.93
TCF4-249ENST00000625716 MAP3K7O43318 606 aa9.23□□□□□ -0.93
TCF4-249ENST00000625716 OSBPP22059 807 aa9.23□□□□□ -0.93
TCF4-249ENST00000625716 TRIM26Q12899 539 aaPredicted RBP9.23□□□□□ -0.93
TCF4-249ENST00000625716 IFFO2Q5TF58 517 aa9.23□□□□□ -0.93
TCF4-249ENST00000625716 SIRT1Q96EB6 747 aa9.23□□□□□ -0.93
TCF4-249ENST00000625716 PRAG1Q86YV5 1406 aa9.22□□□□□ -0.93
TCF4-249ENST00000625716 NRXN1Q9ULB1 1477 aa9.22□□□□□ -0.93
TCF4-249ENST00000625716 GRXCR2A6NFK2 248 aa9.22□□□□□ -0.93
TCF4-249ENST00000625716 ESCO1Q5FWF5 840 aa9.22□□□□□ -0.93
TCF4-249ENST00000625716 MEX3CQ5U5Q3 659 aaKnown RBP9.22□□□□□ -0.93
TCF4-249ENST00000625716 ILDR2Q71H61 639 aa9.22□□□□□ -0.93
TCF4-249ENST00000625716 ANKK1Q8NFD2 765 aa9.22□□□□□ -0.93
TCF4-249ENST00000625716 LRRC59Q96AG4 307 aaKnown RBP9.22□□□□□ -0.93
TCF4-249ENST00000625716 TECPR2O15040 1411 aa9.22□□□□□ -0.93
TCF4-249ENST00000625716 LAMC1P11047 1609 aa9.21□□□□□ -0.93
TCF4-249ENST00000625716 NUTM2FA1L443 756 aa9.21□□□□□ -0.94
TCF4-249ENST00000625716 SAFB2Q14151 953 aaKnown RBP eCLIP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms