RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 ANTXR1Q9H6X2 564 aa16.24■□□□□ 0.19
CCDC88A-214ENST00000621814 CALD1Q05682 793 aaKnown RBP16.23■□□□□ 0.19
CCDC88A-214ENST00000621814 FOXD4L1Q9NU39 408 aa16.23■□□□□ 0.19
CCDC88A-214ENST00000621814 FAM135BQ49AJ0 1406 aa16.23■□□□□ 0.19
CCDC88A-214ENST00000621814 MCM10Q7L590 875 aa16.22■□□□□ 0.19
CCDC88A-214ENST00000621814 IFT57Q9NWB7 429 aa16.22■□□□□ 0.19
CCDC88A-214ENST00000621814 MED14O60244 1454 aa16.22■□□□□ 0.19
CCDC88A-214ENST00000621814 HSCBQ8IWL3 235 aa16.22■□□□□ 0.19
CCDC88A-214ENST00000621814 MIS18AQ9NYP9 233 aa16.21■□□□□ 0.19
CCDC88A-214ENST00000621814 CFAP44Q96MT7 982 aa16.2■□□□□ 0.18
CCDC88A-214ENST00000621814 SLC26A8Q96RN1 970 aa16.2■□□□□ 0.18
CCDC88A-214ENST00000621814 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.2■□□□□ 0.18
CCDC88A-214ENST00000621814 SIRT2Q8IXJ6 389 aa16.19■□□□□ 0.18
CCDC88A-214ENST00000621814 HSP90AB2PQ58FF8 381 aa16.19■□□□□ 0.18
CCDC88A-214ENST00000621814 ZMYM3Q14202 1370 aa16.19■□□□□ 0.18
CCDC88A-214ENST00000621814 CLTCQ00610 1675 aaKnown RBP16.18■□□□□ 0.18
CCDC88A-214ENST00000621814 PRR36Q9H6K5 1346 aa16.18■□□□□ 0.18
CCDC88A-214ENST00000621814 EDC4Q6P2E9 1401 aaKnown RBP16.18■□□□□ 0.18
CCDC88A-214ENST00000621814 HSP90AA1P07900 732 aaKnown RBP16.18■□□□□ 0.18
CCDC88A-214ENST00000621814 LMOD3Q0VAK6 560 aa16.18■□□□□ 0.18
CCDC88A-214ENST00000621814 VIRMAQ69YN4 1812 aaKnown RBP16.18■□□□□ 0.18
CCDC88A-214ENST00000621814 EIF4A2Q14240 407 aaKnown RBP16.17■□□□□ 0.18
CCDC88A-214ENST00000621814 CEBPAP49715 358 aaPredicted RBP16.17■□□□□ 0.18
CCDC88A-214ENST00000621814 ATP7BP35670 1465 aa16.17■□□□□ 0.18
CCDC88A-214ENST00000621814 HDGFP51858 240 aaKnown RBP16.17■□□□□ 0.18
CCDC88A-214ENST00000621814 ZNF428Q96B54 188 aa16.17■□□□□ 0.18
CCDC88A-214ENST00000621814 ZNF853P0CG23 659 aa16.16■□□□□ 0.18
CCDC88A-214ENST00000621814 MAP2P11137 1827 aaKnown RBP16.16■□□□□ 0.18
CCDC88A-214ENST00000621814 ACEP12821 1306 aa16.16■□□□□ 0.18
CCDC88A-214ENST00000621814 HSP90AB1P08238 724 aaKnown RBP16.16■□□□□ 0.18
CCDC88A-214ENST00000621814 GCC1Q96CN9 775 aa16.16■□□□□ 0.18
CCDC88A-214ENST00000621814 PPP6R1Q9UPN7 881 aa16.16■□□□□ 0.18
CCDC88A-214ENST00000621814 C16orf71Q8IYS4 520 aaPredicted RBP16.15■□□□□ 0.18
CCDC88A-214ENST00000621814 CPSF1Q10570 1443 aaKnown RBP16.15■□□□□ 0.18
CCDC88A-214ENST00000621814 CPS1P31327 1500 aa16.15■□□□□ 0.18
CCDC88A-214ENST00000621814 RBM42Q9BTD8 480 aaKnown RBP16.15■□□□□ 0.18
CCDC88A-214ENST00000621814 ARHGAP45Q92619 1136 aa16.15■□□□□ 0.18
CCDC88A-214ENST00000621814 ZNF692Q9BU19 519 aaPredicted RBP16.15■□□□□ 0.18
CCDC88A-214ENST00000621814 API5Q9BZZ5 524 aaKnown RBP16.15■□□□□ 0.18
CCDC88A-214ENST00000621814 CHMP4BQ9H444 224 aaKnown RBP16.15■□□□□ 0.18
CCDC88A-214ENST00000621814 CHMP5Q9NZZ3 219 aa16.15■□□□□ 0.18
CCDC88A-214ENST00000621814 KIF20BQ96Q89 1820 aa16.14■□□□□ 0.17
CCDC88A-214ENST00000621814 FOXO3O43524 673 aa16.14■□□□□ 0.17
CCDC88A-214ENST00000621814 MCM4P33991 863 aa16.14■□□□□ 0.17
CCDC88A-214ENST00000621814 SLC4A10Q6U841 1118 aa16.14■□□□□ 0.17
CCDC88A-214ENST00000621814 TBC1D9Q6ZT07 1266 aa16.14■□□□□ 0.17
CCDC88A-214ENST00000621814 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.14■□□□□ 0.17
CCDC88A-214ENST00000621814 BMP2KLQ5H9B9 411 aa16.13■□□□□ 0.17
CCDC88A-214ENST00000621814 ANKRD26Q9UPS8 1709 aa16.13■□□□□ 0.17
CCDC88A-214ENST00000621814 NUTM2GQ5VZR2 741 aa16.13■□□□□ 0.17
CCDC88A-214ENST00000621814 ROBO2Q9HCK4 1378 aa16.13■□□□□ 0.17
CCDC88A-214ENST00000621814 TTC21BQ7Z4L5 1316 aa16.13■□□□□ 0.17
CCDC88A-214ENST00000621814 BRPF1P55201 1214 aaPredicted RBP16.12■□□□□ 0.17
CCDC88A-214ENST00000621814 ABCC4O15439 1325 aa16.12■□□□□ 0.17
CCDC88A-214ENST00000621814 LTKP29376 864 aa16.12■□□□□ 0.17
CCDC88A-214ENST00000621814 NECTIN2Q92692 538 aa16.12■□□□□ 0.17
CCDC88A-214ENST00000621814 ANO8Q9HCE9 1232 aaPredicted RBP16.12■□□□□ 0.17
CCDC88A-214ENST00000621814 SMARCA5O60264 1052 aaPredicted RBP16.11■□□□□ 0.17
CCDC88A-214ENST00000621814 CD2BP2O95400 341 aaKnown RBP16.11■□□□□ 0.17
CCDC88A-214ENST00000621814 PLEKHG5O94827 1062 aa16.1■□□□□ 0.17
CCDC88A-214ENST00000621814 SLC4A2P04920 1241 aa16.1■□□□□ 0.17
CCDC88A-214ENST00000621814 OTUD7AQ8TE49 926 aaPredicted RBP16.1■□□□□ 0.17
CCDC88A-214ENST00000621814 AATKQ6ZMQ8 1374 aa16.09■□□□□ 0.17
CCDC88A-214ENST00000621814 F6X3S4 739 aa16.09■□□□□ 0.17
CCDC88A-214ENST00000621814 TRAK2O60296 914 aa16.09■□□□□ 0.17
CCDC88A-214ENST00000621814 RBM25P49756 843 aaKnown RBP16.09■□□□□ 0.17
CCDC88A-214ENST00000621814 NGDNQ8NEJ9 315 aaKnown RBP16.09■□□□□ 0.17
CCDC88A-214ENST00000621814 CDK12Q9NYV4 1490 aaPredicted RBP16.09■□□□□ 0.17
CCDC88A-214ENST00000621814 TNRQ92752 1358 aa16.09■□□□□ 0.17
CCDC88A-214ENST00000621814 DLC1Q96QB1 1528 aa16.09■□□□□ 0.17
CCDC88A-214ENST00000621814 RTF1Q92541 710 aaKnown RBP16.08■□□□□ 0.16
CCDC88A-214ENST00000621814 LTV1Q96GA3 475 aaPredicted RBP16.08■□□□□ 0.16
CCDC88A-214ENST00000621814 MEIS3Q99687 375 aa16.08■□□□□ 0.16
CCDC88A-214ENST00000621814 GSPT1P15170 499 aaKnown RBP16.08■□□□□ 0.16
CCDC88A-214ENST00000621814 AMPHP49418 695 aa16.08■□□□□ 0.16
CCDC88A-214ENST00000621814 PTCH1Q13635 1447 aa16.07■□□□□ 0.16
CCDC88A-214ENST00000621814 DIP2BQ9P265 1576 aa16.07■□□□□ 0.16
CCDC88A-214ENST00000621814 SPATA31D1Q6ZQQ2 1576 aa16.07■□□□□ 0.16
CCDC88A-214ENST00000621814 C14orf37Q86TY3 774 aa16.07■□□□□ 0.16
CCDC88A-214ENST00000621814 PLEKHM2Q8IWE5 1019 aa16.07■□□□□ 0.16
CCDC88A-214ENST00000621814 GOLGA6L3A6NEY3 463 aa16.06■□□□□ 0.16
CCDC88A-214ENST00000621814 TSPYL4Q9UJ04 414 aa16.06■□□□□ 0.16
CCDC88A-214ENST00000621814 KIF2CQ99661 725 aa16.06■□□□□ 0.16
CCDC88A-214ENST00000621814 TMEM2Q9UHN6 1383 aa16.06■□□□□ 0.16
CCDC88A-214ENST00000621814 RIMBP3CA6NJZ7 1639 aa16.06■□□□□ 0.16
CCDC88A-214ENST00000621814 RIMBP3BA6NNM3 1639 aa16.06■□□□□ 0.16
CCDC88A-214ENST00000621814 RIMBP3Q9UFD9 1639 aa16.06■□□□□ 0.16
CCDC88A-214ENST00000621814 CHL1O00533 1208 aa16.05■□□□□ 0.16
CCDC88A-214ENST00000621814 CDC45O75419 566 aa16.05■□□□□ 0.16
CCDC88A-214ENST00000621814 MTHFSDQ2M296 383 aaKnown RBP16.05■□□□□ 0.16
CCDC88A-214ENST00000621814 AMOTL2Q9Y2J4 779 aa16.05■□□□□ 0.16
CCDC88A-214ENST00000621814 CDC42BPGQ6DT37 1551 aa16.05■□□□□ 0.16
CCDC88A-214ENST00000621814 G2E3Q7L622 706 aa16.05■□□□□ 0.16
CCDC88A-214ENST00000621814 TNPO1Q92973 898 aaKnown RBP16.05■□□□□ 0.16
CCDC88A-214ENST00000621814 DCTPP1Q9H773 170 aa16.05■□□□□ 0.16
CCDC88A-214ENST00000621814 PANK2Q9BZ23 570 aa16.04■□□□□ 0.16
CCDC88A-214ENST00000621814 MAP3K19Q56UN5 1328 aa16.04■□□□□ 0.16
CCDC88A-214ENST00000621814 PIK3R4Q99570 1358 aa16.04■□□□□ 0.16
CCDC88A-214ENST00000621814 ZBTB7CA1YPR0 619 aa16.03■□□□□ 0.16
CCDC88A-214ENST00000621814 L1TD1Q5T7N2 865 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms