RNA–Protein interactions for RNA: ENST00000602492.5

PPFIA3-204, Transcript of PTPRF interacting protein alpha 3, human

TSL 4

Gene PPFIA3, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPFIA3-204	ENST00000602492	ARHGEF25	Q86VW2	580 aa		28.87	■■■□□ 2.21
PPFIA3-204	ENST00000602492	AXIN2	Q9Y2T1	843 aa		28.87	■■■□□ 2.21
PPFIA3-204	ENST00000602492	AKAP12	Q02952	1782 aa		28.86	■■■□□ 2.21
PPFIA3-204	ENST00000602492	LRRC37A3	O60309	1634 aa		28.86	■■■□□ 2.21
PPFIA3-204	ENST00000602492	SOX12	O15370	315 aa		28.85	■■■□□ 2.21
PPFIA3-204	ENST00000602492	PEAK1	Q9H792	1746 aa		28.85	■■■□□ 2.21
PPFIA3-204	ENST00000602492	CDCA7	Q9BWT1	371 aa	Predicted RBP	28.84	■■■□□ 2.21
PPFIA3-204	ENST00000602492	KTN1	Q86UP2	1357 aa	Known RBP	28.84	■■■□□ 2.21
PPFIA3-204	ENST00000602492	CSB-PGBD3	P0DP91	1061 aa		28.82	■■■□□ 2.2
PPFIA3-204	ENST00000602492	CARD10	Q9BWT7	1032 aa		28.8	■■■□□ 2.2
PPFIA3-204	ENST00000602492	SBNO2	Q9Y2G9	1366 aa		28.79	■■■□□ 2.2
PPFIA3-204	ENST00000602492	WNK3	Q9BYP7	1800 aa		28.79	■■■□□ 2.2
PPFIA3-204	ENST00000602492	NFAT5	O94916	1531 aa		28.79	■■■□□ 2.2
PPFIA3-204	ENST00000602492	PLSCR1	O15162	318 aa		28.78	■■■□□ 2.2
PPFIA3-204	ENST00000602492	BCL11B	Q9C0K0	894 aa	Predicted RBP	28.78	■■■□□ 2.2
PPFIA3-204	ENST00000602492	SBF2	Q86WG5	1849 aa		28.78	■■■□□ 2.2
PPFIA3-204	ENST00000602492	MARCH10	Q8NA82	808 aa	Predicted RBP	28.77	■■■□□ 2.2
PPFIA3-204	ENST00000602492	RGPD3	A6NKT7	1758 aa	Predicted RBP	28.76	■■■□□ 2.19
PPFIA3-204	ENST00000602492	RGPD4	Q7Z3J3	1758 aa		28.76	■■■□□ 2.19
PPFIA3-204	ENST00000602492	RGPD5	Q99666	1765 aa		28.76	■■■□□ 2.19
PPFIA3-204	ENST00000602492	CARD11	Q9BXL7	1154 aa		28.76	■■■□□ 2.19
PPFIA3-204	ENST00000602492	MON2	Q7Z3U7	1717 aa		28.74	■■■□□ 2.19
PPFIA3-204	ENST00000602492	ABCC6	O95255	1503 aa		28.74	■■■□□ 2.19
PPFIA3-204	ENST00000602492	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	28.74	■■■□□ 2.19
PPFIA3-204	ENST00000602492	BCL9	O00512	1426 aa		28.74	■■■□□ 2.19
PPFIA3-204	ENST00000602492	SPON1	Q9HCB6	807 aa		28.73	■■■□□ 2.19
PPFIA3-204	ENST00000602492	CCDC7	Q96M83	1385 aa		28.73	■■■□□ 2.19
PPFIA3-204	ENST00000602492	PTF1A	Q7RTS3	328 aa		28.72	■■■□□ 2.19
PPFIA3-204	ENST00000602492	USP31	Q70CQ4	1352 aa		28.72	■■■□□ 2.19
PPFIA3-204	ENST00000602492	EXOC5	O00471	708 aa		28.71	■■■□□ 2.19
PPFIA3-204	ENST00000602492	KCNQ2	O43526	872 aa		28.7	■■■□□ 2.18
PPFIA3-204	ENST00000602492	TMC1	Q8TDI8	760 aa		28.7	■■■□□ 2.18
PPFIA3-204	ENST00000602492	PPP1R1B	Q9UD71	204 aa	Predicted RBP	28.7	■■■□□ 2.18
PPFIA3-204	ENST00000602492	CD163L1	Q9NR16	1453 aa		28.68	■■■□□ 2.18
PPFIA3-204	ENST00000602492	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	28.68	■■■□□ 2.18
PPFIA3-204	ENST00000602492	NME9	Q86XW9	330 aa		28.68	■■■□□ 2.18
PPFIA3-204	ENST00000602492	ANO8	Q9HCE9	1232 aa	Predicted RBP	28.67	■■■□□ 2.18
PPFIA3-204	ENST00000602492	USP54	Q70EL1	1684 aa		28.66	■■■□□ 2.18
PPFIA3-204	ENST00000602492	TNS2	Q63HR2	1409 aa		28.66	■■■□□ 2.18
PPFIA3-204	ENST00000602492	TONSL	Q96HA7	1378 aa		28.65	■■■□□ 2.18
PPFIA3-204	ENST00000602492	ERBB3	P21860	1342 aa		28.65	■■■□□ 2.18
PPFIA3-204	ENST00000602492	PROM2	Q8N271	834 aa		28.64	■■■□□ 2.18
PPFIA3-204	ENST00000602492	SLC12A5	Q9H2X9	1139 aa		28.64	■■■□□ 2.18
PPFIA3-204	ENST00000602492	NLRP2	Q9NX02	1062 aa		28.64	■■■□□ 2.18
PPFIA3-204	ENST00000602492	EDC4	Q6P2E9	1401 aa	Known RBP	28.63	■■■□□ 2.17
PPFIA3-204	ENST00000602492	TERF2IP	Q9NYB0	399 aa		28.63	■■■□□ 2.17
PPFIA3-204	ENST00000602492	TXNRD1	Q16881	649 aa		28.6	■■■□□ 2.17
PPFIA3-204	ENST00000602492	NINL	Q9Y2I6	1382 aa		28.6	■■■□□ 2.17
PPFIA3-204	ENST00000602492	PUS7	Q96PZ0	661 aa	Known RBP	28.59	■■■□□ 2.17
PPFIA3-204	ENST00000602492	LTN1	O94822	1766 aa		28.59	■■■□□ 2.17
PPFIA3-204	ENST00000602492		A0A1W2PP64	1363 aa		28.59	■■■□□ 2.17
PPFIA3-204	ENST00000602492	ANKRD24	Q8TF21	1146 aa		28.58	■■■□□ 2.17
PPFIA3-204	ENST00000602492	CASZ1	Q86V15	1759 aa		28.57	■■■□□ 2.16
PPFIA3-204	ENST00000602492	IL2RB	P14784	551 aa		28.57	■■■□□ 2.16
PPFIA3-204	ENST00000602492	STK32B	Q9NY57	414 aa		28.57	■■■□□ 2.16
PPFIA3-204	ENST00000602492	DCAF8L1	A6NGE4	600 aa		28.55	■■■□□ 2.16
PPFIA3-204	ENST00000602492	ACSBG1	Q96GR2	724 aa		28.54	■■■□□ 2.16
PPFIA3-204	ENST00000602492	PDGFD	Q9GZP0	370 aa	Predicted RBP	28.54	■■■□□ 2.16
PPFIA3-204	ENST00000602492	NHS	Q6T4R5	1651 aa		28.54	■■■□□ 2.16
PPFIA3-204	ENST00000602492	ZBTB7A	O95365	584 aa		28.53	■■■□□ 2.16
PPFIA3-204	ENST00000602492	SLC15A2	Q16348	729 aa		28.52	■■■□□ 2.16
PPFIA3-204	ENST00000602492	YY1	P25490	414 aa		28.5	■■■□□ 2.15
PPFIA3-204	ENST00000602492	IP6K1	Q92551	441 aa		28.49	■■■□□ 2.15
PPFIA3-204	ENST00000602492	TESK2	Q96S53	571 aa		28.49	■■■□□ 2.15
PPFIA3-204	ENST00000602492	ST20-MTHFS	A0A0A6YYL1	179 aa		28.48	■■■□□ 2.15
PPFIA3-204	ENST00000602492	SLC24A1	O60721	1099 aa		28.47	■■■□□ 2.15
PPFIA3-204	ENST00000602492	ATF5	Q9Y2D1	282 aa	Predicted RBP	28.47	■■■□□ 2.15
PPFIA3-204	ENST00000602492	KAT6B	Q8WYB5	2073 aa		28.46	■■■□□ 2.15
PPFIA3-204	ENST00000602492	PTGER2	P43116	358 aa		28.46	■■■□□ 2.15
PPFIA3-204	ENST00000602492	LTV1	Q96GA3	475 aa	Predicted RBP	28.45	■■■□□ 2.14
PPFIA3-204	ENST00000602492	COG3	Q96JB2	828 aa		28.45	■■■□□ 2.14
PPFIA3-204	ENST00000602492	MTFR1L	Q9H019	292 aa		28.43	■■■□□ 2.14
PPFIA3-204	ENST00000602492	BTAF1	O14981	1849 aa		28.43	■■■□□ 2.14
PPFIA3-204	ENST00000602492	MYOM1	P52179	1685 aa		28.42	■■■□□ 2.14
PPFIA3-204	ENST00000602492	FAM208A	Q9UK61	1670 aa	Known RBP	28.42	■■■□□ 2.14
PPFIA3-204	ENST00000602492	MAP3K19	Q56UN5	1328 aa		28.41	■■■□□ 2.14
PPFIA3-204	ENST00000602492	DDX54	Q8TDD1	881 aa	Known RBP	28.4	■■■□□ 2.14
PPFIA3-204	ENST00000602492	AMPH	P49418	695 aa		28.39	■■■□□ 2.14
PPFIA3-204	ENST00000602492	PAPPA	Q13219	1627 aa		28.39	■■■□□ 2.13
PPFIA3-204	ENST00000602492	HOXC9	P31274	260 aa		28.38	■■■□□ 2.13
PPFIA3-204	ENST00000602492	ANKRD36B	Q8N2N9	1353 aa		28.37	■■■□□ 2.13
PPFIA3-204	ENST00000602492	FBLN1	P23142	703 aa		28.35	■■■□□ 2.13
PPFIA3-204	ENST00000602492	FHDC1	Q9C0D6	1143 aa	Predicted RBP	28.35	■■■□□ 2.13
PPFIA3-204	ENST00000602492	LRRC4B	Q9NT99	713 aa		28.35	■■■□□ 2.13
PPFIA3-204	ENST00000602492	ZNF827	Q17R98	1081 aa		28.34	■■■□□ 2.13
PPFIA3-204	ENST00000602492	SGIP1	Q9BQI5	828 aa		28.34	■■■□□ 2.13
PPFIA3-204	ENST00000602492	TMF1	P82094	1093 aa		28.33	■■■□□ 2.13
PPFIA3-204	ENST00000602492	SYT17	Q9BSW7	474 aa		28.33	■■■□□ 2.13
PPFIA3-204	ENST00000602492	SLC27A3	Q5K4L6	730 aa		28.32	■■■□□ 2.12
PPFIA3-204	ENST00000602492	RTL1	A6NKG5	1358 aa		28.32	■■■□□ 2.12
PPFIA3-204	ENST00000602492	SYTL4	Q96C24	671 aa	Predicted RBP	28.31	■■■□□ 2.12
PPFIA3-204	ENST00000602492	USP47	Q96K76	1375 aa		28.3	■■■□□ 2.12
PPFIA3-204	ENST00000602492	ZCRB1	Q8TBF4	217 aa	Known RBP	28.3	■■■□□ 2.12
PPFIA3-204	ENST00000602492	RRS1	Q15050	365 aa	Known RBP	28.29	■■■□□ 2.12
PPFIA3-204	ENST00000602492	ARX	Q96QS3	562 aa		28.29	■■■□□ 2.12
PPFIA3-204	ENST00000602492	FYB1	O15117	783 aa		28.28	■■■□□ 2.12
PPFIA3-204	ENST00000602492	PRIM1	P49642	420 aa	Known RBP	28.28	■■■□□ 2.12
PPFIA3-204	ENST00000602492	AKT1S1	Q96B36	256 aa		28.28	■■■□□ 2.12
PPFIA3-204	ENST00000602492	GGNBP2	Q9H3C7	697 aa		28.28	■■■□□ 2.12
PPFIA3-204	ENST00000602492	MEGF6	O75095	1541 aa		28.28	■■■□□ 2.12

Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms