RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 RAB3GAP1Q15042 981 aa22.83■■□□□ 1.25
UPF1-210ENST00000600689 CCDC27Q2M243 656 aa22.83■■□□□ 1.25
UPF1-210ENST00000600689 MCTP1Q6DN14 999 aa22.82■■□□□ 1.24
UPF1-210ENST00000600689 CHAMP1Q96JM3 812 aa22.82■■□□□ 1.24
UPF1-210ENST00000600689 CD163L1Q9NR16 1453 aa22.82■■□□□ 1.24
UPF1-210ENST00000600689 TBC1D9Q6ZT07 1266 aa22.82■■□□□ 1.24
UPF1-210ENST00000600689 RBM25P49756 843 aaKnown RBP22.81■■□□□ 1.24
UPF1-210ENST00000600689 ANP32BQ92688 251 aaKnown RBP22.81■■□□□ 1.24
UPF1-210ENST00000600689 RIMS2Q9UQ26 1411 aa22.81■■□□□ 1.24
UPF1-210ENST00000600689 REREQ9P2R6 1566 aa22.81■■□□□ 1.24
UPF1-210ENST00000600689 KIF2CQ99661 725 aa22.8■■□□□ 1.24
UPF1-210ENST00000600689 K7ELQ4 463 aaPredicted RBP22.8■■□□□ 1.24
UPF1-210ENST00000600689 ATAD2Q6PL18 1390 aa22.8■■□□□ 1.24
UPF1-210ENST00000600689 IQSEC2Q5JU85 1478 aa22.8■■□□□ 1.24
UPF1-210ENST00000600689 CAVIN1Q6NZI2 390 aaKnown RBP22.8■■□□□ 1.24
UPF1-210ENST00000600689 TERF2IPQ9NYB0 399 aa22.8■■□□□ 1.24
UPF1-210ENST00000600689 NSD2O96028 1365 aa22.8■■□□□ 1.24
UPF1-210ENST00000600689 GOLGA6L22H0YM25 854 aa22.79■■□□□ 1.24
UPF1-210ENST00000600689 DDIT3P35638 169 aa22.79■■□□□ 1.24
UPF1-210ENST00000600689 PPP6R1Q9UPN7 881 aa22.79■■□□□ 1.24
UPF1-210ENST00000600689 KIF13AQ9H1H9 1805 aa22.79■■□□□ 1.24
UPF1-210ENST00000600689 SPATA31D1Q6ZQQ2 1576 aa22.78■■□□□ 1.24
UPF1-210ENST00000600689 IPO8O15397 1037 aaKnown RBP22.78■■□□□ 1.24
UPF1-210ENST00000600689 TPRNQ4KMQ1 711 aa22.78■■□□□ 1.24
UPF1-210ENST00000600689 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.78■■□□□ 1.24
UPF1-210ENST00000600689 MSNP26038 577 aaKnown RBP22.77■■□□□ 1.24
UPF1-210ENST00000600689 SNX21Q969T3 373 aa22.77■■□□□ 1.24
UPF1-210ENST00000600689 ESF1Q9H501 851 aaKnown RBP22.77■■□□□ 1.24
UPF1-210ENST00000600689 ARHGEF40Q8TER5 1519 aa22.77■■□□□ 1.24
UPF1-210ENST00000600689 HMOX1P09601 288 aa22.77■■□□□ 1.24
UPF1-210ENST00000600689 PKP1Q13835 747 aa22.76■■□□□ 1.23
UPF1-210ENST00000600689 ZMYM3Q14202 1370 aa22.76■■□□□ 1.23
UPF1-210ENST00000600689 SKOR2Q2VWA4 1001 aaPredicted RBP22.75■■□□□ 1.23
UPF1-210ENST00000600689 R3HCC1Q9Y3T6 440 aaKnown RBP22.75■■□□□ 1.23
UPF1-210ENST00000600689 FAM13BQ9NYF5 915 aa22.75■■□□□ 1.23
UPF1-210ENST00000600689 BAG4O95429 457 aaKnown RBP22.74■■□□□ 1.23
UPF1-210ENST00000600689 HDGFL2Q7Z4V5 671 aaPredicted RBP22.74■■□□□ 1.23
UPF1-210ENST00000600689 TSPYL6Q8N831 410 aa22.74■■□□□ 1.23
UPF1-210ENST00000600689 PLEKHF1Q96S99 279 aa22.74■■□□□ 1.23
UPF1-210ENST00000600689 RBM27Q9P2N5 1060 aaKnown RBP22.74■■□□□ 1.23
UPF1-210ENST00000600689 TXNDC2Q86VQ3 553 aa22.73■■□□□ 1.23
UPF1-210ENST00000600689 METP08581 1390 aa22.73■■□□□ 1.23
UPF1-210ENST00000600689 KIF16BQ96L93 1317 aa22.73■■□□□ 1.23
UPF1-210ENST00000600689 BMP2KLQ5H9B9 411 aa22.73■■□□□ 1.23
UPF1-210ENST00000600689 CIZ1Q9ULV3 898 aaPredicted RBP22.73■■□□□ 1.23
UPF1-210ENST00000600689 C16orf71Q8IYS4 520 aaPredicted RBP22.72■■□□□ 1.23
UPF1-210ENST00000600689 NCKAP5LQ9HCH0 1330 aa22.72■■□□□ 1.23
UPF1-210ENST00000600689 XPCQ01831 940 aaPredicted RBP22.71■■□□□ 1.23
UPF1-210ENST00000600689 MPNDQ8N594 471 aa22.71■■□□□ 1.23
UPF1-210ENST00000600689 CCDC173Q0VFZ6 552 aa22.71■■□□□ 1.23
UPF1-210ENST00000600689 FOXD4L6Q3SYB3 417 aaPredicted RBP22.71■■□□□ 1.23
UPF1-210ENST00000600689 FOXD4L3Q6VB84 417 aaPredicted RBP22.71■■□□□ 1.23
UPF1-210ENST00000600689 PRKAR2BP31323 418 aa22.7■■□□□ 1.22
UPF1-210ENST00000600689 CALD1Q05682 793 aaKnown RBP22.7■■□□□ 1.22
UPF1-210ENST00000600689 SETD1AO15047 1707 aaKnown RBP22.7■■□□□ 1.22
UPF1-210ENST00000600689 DIAPH1O60610 1272 aaKnown RBP22.69■■□□□ 1.22
UPF1-210ENST00000600689 ZSCAN30Q86W11 494 aa22.69■■□□□ 1.22
UPF1-210ENST00000600689 PRPF40AO75400 957 aaKnown RBP22.69■■□□□ 1.22
UPF1-210ENST00000600689 ISY1Q9ULR0 285 aaKnown RBP22.69■■□□□ 1.22
UPF1-210ENST00000600689 NCOA3Q9Y6Q9 1424 aa22.69■■□□□ 1.22
UPF1-210ENST00000600689 CT47B1P0C2W7 299 aaPredicted RBP22.68■■□□□ 1.22
UPF1-210ENST00000600689 RNF214Q8ND24 703 aa22.68■■□□□ 1.22
UPF1-210ENST00000600689 NOL8Q76FK4 1167 aaKnown RBP22.68■■□□□ 1.22
UPF1-210ENST00000600689 SIRT2Q8IXJ6 389 aa22.68■■□□□ 1.22
UPF1-210ENST00000600689 NRXN3Q9Y4C0 1643 aa22.68■■□□□ 1.22
UPF1-210ENST00000600689 COL3A1P02461 1466 aaPredicted RBP22.67■■□□□ 1.22
UPF1-210ENST00000600689 ZBTB7BO15156 539 aaPredicted RBP22.67■■□□□ 1.22
UPF1-210ENST00000600689 ZGPATQ8N5A5 531 aaKnown RBP22.67■■□□□ 1.22
UPF1-210ENST00000600689 PLPPR3Q6T4P5 718 aa22.66■■□□□ 1.22
UPF1-210ENST00000600689 OTUD7AQ8TE49 926 aaPredicted RBP22.66■■□□□ 1.22
UPF1-210ENST00000600689 PPIP5K1Q6PFW1 1433 aa22.66■■□□□ 1.22
UPF1-210ENST00000600689 RBSNQ9H1K0 784 aa22.66■■□□□ 1.22
UPF1-210ENST00000600689 ZRANB1Q9UGI0 708 aa22.65■■□□□ 1.22
UPF1-210ENST00000600689 TPM2P07951 284 aa22.65■■□□□ 1.22
UPF1-210ENST00000600689 GSPT1P15170 499 aaKnown RBP22.65■■□□□ 1.22
UPF1-210ENST00000600689 PHACTR3Q96KR7 559 aa22.65■■□□□ 1.22
UPF1-210ENST00000600689 AK9Q5TCS8 1911 aa22.65■■□□□ 1.22
UPF1-210ENST00000600689 SMARCA5O60264 1052 aaPredicted RBP22.64■■□□□ 1.22
UPF1-210ENST00000600689 CDC45O75419 566 aa22.64■■□□□ 1.22
UPF1-210ENST00000600689 PRIM1P49642 420 aaKnown RBP22.64■■□□□ 1.22
UPF1-210ENST00000600689 KLHL40Q2TBA0 621 aa22.64■■□□□ 1.21
UPF1-210ENST00000600689 ZSCAN23Q3MJ62 389 aa22.64■■□□□ 1.21
UPF1-210ENST00000600689 ANKRD26Q9UPS8 1709 aa22.64■■□□□ 1.21
UPF1-210ENST00000600689 CEBPAP49715 358 aaPredicted RBP22.63■■□□□ 1.21
UPF1-210ENST00000600689 WASLO00401 505 aaPredicted RBP22.63■■□□□ 1.21
UPF1-210ENST00000600689 DLC1Q96QB1 1528 aa22.63■■□□□ 1.21
UPF1-210ENST00000600689 ADGRB2O60241 1585 aa22.62■■□□□ 1.21
UPF1-210ENST00000600689 DCTN1Q14203 1278 aa22.62■■□□□ 1.21
UPF1-210ENST00000600689 NME9Q86XW9 330 aa22.61■■□□□ 1.21
UPF1-210ENST00000600689 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.61■■□□□ 1.21
UPF1-210ENST00000600689 GCC1Q96CN9 775 aa22.61■■□□□ 1.21
UPF1-210ENST00000600689 TNRQ92752 1358 aa22.61■■□□□ 1.21
UPF1-210ENST00000600689 POLKQ9UBT6 870 aa22.61■■□□□ 1.21
UPF1-210ENST00000600689 MED14O60244 1454 aa22.61■■□□□ 1.21
UPF1-210ENST00000600689 KIF20BQ96Q89 1820 aa22.61■■□□□ 1.21
UPF1-210ENST00000600689 SYCE3A1L190 88 aa22.59■■□□□ 1.21
UPF1-210ENST00000600689 FAM83GA6ND36 823 aa22.59■■□□□ 1.21
UPF1-210ENST00000600689 PPP1R9BQ96SB3 815 aa22.59■■□□□ 1.21
UPF1-210ENST00000600689 EMILIN1Q9Y6C2 1016 aa22.59■■□□□ 1.21
UPF1-210ENST00000600689 VAMP4O75379 141 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms