RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 TOM1L2Q6ZVM7 507 aa30.32■■■□□ 2.44
PNKP-212ENST00000599454 KCNH5Q8NCM2 988 aa30.32■■■□□ 2.44
PNKP-212ENST00000599454 WDR17Q8IZU2 1322 aa30.31■■■□□ 2.44
PNKP-212ENST00000599454 TTC21AQ8NDW8 1320 aa30.31■■■□□ 2.44
PNKP-212ENST00000599454 SIN3AQ96ST3 1273 aa30.31■■■□□ 2.44
PNKP-212ENST00000599454 TTC21BQ7Z4L5 1316 aa30.3■■■□□ 2.44
PNKP-212ENST00000599454 DDB1Q16531 1140 aa30.3■■■□□ 2.44
PNKP-212ENST00000599454 CDCA7Q9BWT1 371 aaPredicted RBP30.29■■■□□ 2.44
PNKP-212ENST00000599454 MON2Q7Z3U7 1717 aa30.28■■■□□ 2.44
PNKP-212ENST00000599454 ARHGEF25Q86VW2 580 aa30.27■■■□□ 2.44
PNKP-212ENST00000599454 AXIN2Q9Y2T1 843 aa30.26■■■□□ 2.43
PNKP-212ENST00000599454 ABCC6O95255 1503 aa30.26■■■□□ 2.43
PNKP-212ENST00000599454 PLSCR1O15162 318 aa30.24■■■□□ 2.43
PNKP-212ENST00000599454 NEUROD1Q13562 356 aa30.24■■■□□ 2.43
PNKP-212ENST00000599454 BCL9O00512 1426 aa30.23■■■□□ 2.43
PNKP-212ENST00000599454 NFAT5O94916 1531 aa30.23■■■□□ 2.43
PNKP-212ENST00000599454 KTN1Q86UP2 1357 aaKnown RBP30.23■■■□□ 2.43
PNKP-212ENST00000599454 SBNO2Q9Y2G9 1366 aa30.23■■■□□ 2.43
PNKP-212ENST00000599454 CARD10Q9BWT7 1032 aa30.22■■■□□ 2.43
PNKP-212ENST00000599454 USP54Q70EL1 1684 aa30.22■■■□□ 2.43
PNKP-212ENST00000599454 BCL11BQ9C0K0 894 aaPredicted RBP30.21■■■□□ 2.43
PNKP-212ENST00000599454 CSB-PGBD3P0DP91 1061 aa30.19■■■□□ 2.42
PNKP-212ENST00000599454 CCDC7Q96M83 1385 aa30.17■■■□□ 2.42
PNKP-212ENST00000599454 MARCH10Q8NA82 808 aaPredicted RBP30.17■■■□□ 2.42
PNKP-212ENST00000599454 SPON1Q9HCB6 807 aa30.17■■■□□ 2.42
PNKP-212ENST00000599454 SOX12O15370 315 aa30.16■■■□□ 2.42
PNKP-212ENST00000599454 USP31Q70CQ4 1352 aa30.15■■■□□ 2.42
PNKP-212ENST00000599454 LTN1O94822 1766 aa30.15■■■□□ 2.42
PNKP-212ENST00000599454 KCNQ2O43526 872 aa30.14■■■□□ 2.42
PNKP-212ENST00000599454 CASZ1Q86V15 1759 aa30.13■■■□□ 2.41
PNKP-212ENST00000599454 EXOC5O00471 708 aa30.11■■■□□ 2.41
PNKP-212ENST00000599454 PPP1R1BQ9UD71 204 aaPredicted RBP30.11■■■□□ 2.41
PNKP-212ENST00000599454 TNS2Q63HR2 1409 aa30.1■■■□□ 2.41
PNKP-212ENST00000599454 PTF1AQ7RTS3 328 aa30.09■■■□□ 2.41
PNKP-212ENST00000599454 CARD11Q9BXL7 1154 aa30.09■■■□□ 2.41
PNKP-212ENST00000599454 CD163L1Q9NR16 1453 aa30.09■■■□□ 2.41
PNKP-212ENST00000599454 NINLQ9Y2I6 1382 aa30.09■■■□□ 2.41
PNKP-212ENST00000599454 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.08■■■□□ 2.41
PNKP-212ENST00000599454 KAT6BQ8WYB5 2073 aa30.07■■■□□ 2.4
PNKP-212ENST00000599454 ANO8Q9HCE9 1232 aaPredicted RBP30.07■■■□□ 2.4
PNKP-212ENST00000599454 NHSQ6T4R5 1651 aa30.07■■■□□ 2.4
PNKP-212ENST00000599454 ERBB3P21860 1342 aa30.05■■■□□ 2.4
PNKP-212ENST00000599454 HDGFL2Q7Z4V5 671 aaPredicted RBP30.05■■■□□ 2.4
PNKP-212ENST00000599454 PROM2Q8N271 834 aa30.05■■■□□ 2.4
PNKP-212ENST00000599454 EDC4Q6P2E9 1401 aaKnown RBP30.04■■■□□ 2.4
PNKP-212ENST00000599454 NME9Q86XW9 330 aa30.03■■■□□ 2.4
PNKP-212ENST00000599454 TMC1Q8TDI8 760 aa30.03■■■□□ 2.4
PNKP-212ENST00000599454 PUS7Q96PZ0 661 aaKnown RBP30.02■■■□□ 2.4
PNKP-212ENST00000599454 DCAF8L1A6NGE4 600 aa30.01■■■□□ 2.39
PNKP-212ENST00000599454 TXNRD1Q16881 649 aa30■■■□□ 2.39
PNKP-212ENST00000599454 TERF2IPQ9NYB0 399 aa30■■■□□ 2.39
PNKP-212ENST00000599454 NLRP2Q9NX02 1062 aa29.99■■■□□ 2.39
PNKP-212ENST00000599454 STK32BQ9NY57 414 aa29.99■■■□□ 2.39
PNKP-212ENST00000599454 TONSLQ96HA7 1378 aa29.99■■■□□ 2.39
PNKP-212ENST00000599454 FAM208AQ9UK61 1670 aaKnown RBP29.98■■■□□ 2.39
PNKP-212ENST00000599454 SLC12A5Q9H2X9 1139 aa29.98■■■□□ 2.39
PNKP-212ENST00000599454 IL2RBP14784 551 aa29.97■■■□□ 2.39
PNKP-212ENST00000599454 BTAF1O14981 1849 aa29.96■■■□□ 2.39
PNKP-212ENST00000599454 A0A1W2PP64 1363 aa29.96■■■□□ 2.39
PNKP-212ENST00000599454 ANKRD24Q8TF21 1146 aa29.95■■■□□ 2.39
PNKP-212ENST00000599454 YY1P25490 414 aa29.94■■■□□ 2.38
PNKP-212ENST00000599454 SLC15A2Q16348 729 aa29.94■■■□□ 2.38
PNKP-212ENST00000599454 MYOM1P52179 1685 aa29.93■■■□□ 2.38
PNKP-212ENST00000599454 PDGFDQ9GZP0 370 aaPredicted RBP29.92■■■□□ 2.38
PNKP-212ENST00000599454 SLC24A1O60721 1099 aa29.9■■■□□ 2.38
PNKP-212ENST00000599454 ZBTB7AO95365 584 aa29.9■■■□□ 2.38
PNKP-212ENST00000599454 PAPPAQ13219 1627 aa29.89■■■□□ 2.38
PNKP-212ENST00000599454 ACSBG1Q96GR2 724 aa29.89■■■□□ 2.38
PNKP-212ENST00000599454 PTGER2P43116 358 aa29.88■■■□□ 2.37
PNKP-212ENST00000599454 IP6K1Q92551 441 aa29.88■■■□□ 2.37
PNKP-212ENST00000599454 MTFR1LQ9H019 292 aa29.85■■■□□ 2.37
PNKP-212ENST00000599454 TESK2Q96S53 571 aa29.84■■■□□ 2.37
PNKP-212ENST00000599454 ATF5Q9Y2D1 282 aaPredicted RBP29.84■■■□□ 2.37
PNKP-212ENST00000599454 COG3Q96JB2 828 aa29.82■■■□□ 2.36
PNKP-212ENST00000599454 QSER1Q2KHR3 1735 aa29.82■■■□□ 2.36
PNKP-212ENST00000599454 ST20-MTHFSA0A0A6YYL1 179 aa29.8■■■□□ 2.36
PNKP-212ENST00000599454 RGPD2P0DJD1 1756 aa29.8■■■□□ 2.36
PNKP-212ENST00000599454 CHD4Q14839 1912 aa29.78■■■□□ 2.36
PNKP-212ENST00000599454 SGIP1Q9BQI5 828 aa29.77■■■□□ 2.36
PNKP-212ENST00000599454 ANKRD36BQ8N2N9 1353 aa29.77■■■□□ 2.36
PNKP-212ENST00000599454 MAP3K19Q56UN5 1328 aa29.76■■■□□ 2.36
PNKP-212ENST00000599454 LTV1Q96GA3 475 aaPredicted RBP29.76■■■□□ 2.35
PNKP-212ENST00000599454 HOXC9P31274 260 aa29.75■■■□□ 2.35
PNKP-212ENST00000599454 SLC27A3Q5K4L6 730 aa29.75■■■□□ 2.35
PNKP-212ENST00000599454 DDX54Q8TDD1 881 aaKnown RBP29.75■■■□□ 2.35
PNKP-212ENST00000599454 DOT1LQ8TEK3 1739 aa29.75■■■□□ 2.35
PNKP-212ENST00000599454 SYT17Q9BSW7 474 aa29.75■■■□□ 2.35
PNKP-212ENST00000599454 SHANK3Q9BYB0 1731 aa29.75■■■□□ 2.35
PNKP-212ENST00000599454 FHDC1Q9C0D6 1143 aaPredicted RBP29.75■■■□□ 2.35
PNKP-212ENST00000599454 AMPHP49418 695 aa29.74■■■□□ 2.35
PNKP-212ENST00000599454 RTL1A6NKG5 1358 aa29.73■■■□□ 2.35
PNKP-212ENST00000599454 LY75O60449 1722 aa29.73■■■□□ 2.35
PNKP-212ENST00000599454 LRRC4BQ9NT99 713 aa29.72■■■□□ 2.35
PNKP-212ENST00000599454 ZNF827Q17R98 1081 aa29.71■■■□□ 2.35
PNKP-212ENST00000599454 COL24A1Q17RW2 1714 aa29.71■■■□□ 2.35
PNKP-212ENST00000599454 MAP3K5Q99683 1374 aa29.7■■■□□ 2.35
PNKP-212ENST00000599454 ARXQ96QS3 562 aa29.7■■■□□ 2.35
PNKP-212ENST00000599454 TUBGCP6Q96RT7 1819 aa29.69■■■□□ 2.34
PNKP-212ENST00000599454 KIF20BQ96Q89 1820 aa29.68■■■□□ 2.34
PNKP-212ENST00000599454 SLC16A10Q8TF71 515 aa29.68■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms