RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 ARHGEF25Q86VW2 580 aa23.74■■□□□ 1.39
SHKBP1-215ENST00000597649 WDR17Q8IZU2 1322 aa23.74■■□□□ 1.39
SHKBP1-215ENST00000597649 L3MBTL2Q969R5 705 aa23.73■■□□□ 1.39
SHKBP1-215ENST00000597649 LRRC37A3O60309 1634 aa23.71■■□□□ 1.39
SHKBP1-215ENST00000597649 TTC21BQ7Z4L5 1316 aa23.71■■□□□ 1.39
SHKBP1-215ENST00000597649 QRICH2Q9H0J4 1663 aa23.7■■□□□ 1.39
SHKBP1-215ENST00000597649 EVC2Q86UK5 1308 aa23.7■■□□□ 1.38
SHKBP1-215ENST00000597649 SBF2Q86WG5 1849 aa23.7■■□□□ 1.38
SHKBP1-215ENST00000597649 PIK3C2AO00443 1686 aa23.7■■□□□ 1.38
SHKBP1-215ENST00000597649 SOX12O15370 315 aa23.69■■□□□ 1.38
SHKBP1-215ENST00000597649 CARD10Q9BWT7 1032 aa23.69■■□□□ 1.38
SHKBP1-215ENST00000597649 CPSF1Q10570 1443 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-215ENST00000597649 NINLQ9Y2I6 1382 aa23.68■■□□□ 1.38
SHKBP1-215ENST00000597649 CDCA7Q9BWT1 371 aaPredicted RBP23.68■■□□□ 1.38
SHKBP1-215ENST00000597649 BCL9O00512 1426 aa23.67■■□□□ 1.38
SHKBP1-215ENST00000597649 ZNF692Q9BU19 519 aaPredicted RBP23.67■■□□□ 1.38
SHKBP1-215ENST00000597649 ZBTB7AO95365 584 aa23.66■■□□□ 1.38
SHKBP1-215ENST00000597649 KCNH5Q8NCM2 988 aa23.66■■□□□ 1.38
SHKBP1-215ENST00000597649 PTGER2P43116 358 aa23.65■■□□□ 1.38
SHKBP1-215ENST00000597649 EXOC5O00471 708 aa23.64■■□□□ 1.37
SHKBP1-215ENST00000597649 CSB-PGBD3P0DP91 1061 aa23.64■■□□□ 1.37
SHKBP1-215ENST00000597649 SIN3AQ96ST3 1273 aa23.64■■□□□ 1.37
SHKBP1-215ENST00000597649 RGPD3A6NKT7 1758 aaPredicted RBP23.64■■□□□ 1.37
SHKBP1-215ENST00000597649 RGPD4Q7Z3J3 1758 aa23.64■■□□□ 1.37
SHKBP1-215ENST00000597649 TXNRD1Q16881 649 aa23.63■■□□□ 1.37
SHKBP1-215ENST00000597649 ATF5Q9Y2D1 282 aaPredicted RBP23.62■■□□□ 1.37
SHKBP1-215ENST00000597649 CASZ1Q86V15 1759 aa23.62■■□□□ 1.37
SHKBP1-215ENST00000597649 TTC21AQ8NDW8 1320 aa23.61■■□□□ 1.37
SHKBP1-215ENST00000597649 RGPD5Q99666 1765 aa23.6■■□□□ 1.37
SHKBP1-215ENST00000597649 DCAF8L1A6NGE4 600 aa23.6■■□□□ 1.37
SHKBP1-215ENST00000597649 TRIM26Q12899 539 aaPredicted RBP23.6■■□□□ 1.37
SHKBP1-215ENST00000597649 SLC15A2Q16348 729 aa23.59■■□□□ 1.37
SHKBP1-215ENST00000597649 NFAT5O94916 1531 aa23.59■■□□□ 1.37
SHKBP1-215ENST00000597649 STK32BQ9NY57 414 aa23.58■■□□□ 1.37
SHKBP1-215ENST00000597649 WNK3Q9BYP7 1800 aa23.58■■□□□ 1.37
SHKBP1-215ENST00000597649 TRPM1Q7Z4N2 1603 aa23.58■■□□□ 1.36
SHKBP1-215ENST00000597649 KTN1Q86UP2 1357 aaKnown RBP23.57■■□□□ 1.36
SHKBP1-215ENST00000597649 ROCK2O75116 1388 aaKnown RBP23.56■■□□□ 1.36
SHKBP1-215ENST00000597649 CCDC7Q96M83 1385 aa23.56■■□□□ 1.36
SHKBP1-215ENST00000597649 NEUROD1Q13562 356 aa23.55■■□□□ 1.36
SHKBP1-215ENST00000597649 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.55■■□□□ 1.36
SHKBP1-215ENST00000597649 ACSBG1Q96GR2 724 aa23.55■■□□□ 1.36
SHKBP1-215ENST00000597649 AKAP12Q02952 1782 aa23.55■■□□□ 1.36
SHKBP1-215ENST00000597649 SGIP1Q9BQI5 828 aa23.54■■□□□ 1.36
SHKBP1-215ENST00000597649 NME9Q86XW9 330 aa23.53■■□□□ 1.36
SHKBP1-215ENST00000597649 FHDC1Q9C0D6 1143 aaPredicted RBP23.53■■□□□ 1.36
SHKBP1-215ENST00000597649 USP31Q70CQ4 1352 aa23.52■■□□□ 1.36
SHKBP1-215ENST00000597649 TNS2Q63HR2 1409 aa23.52■■□□□ 1.36
SHKBP1-215ENST00000597649 SYT17Q9BSW7 474 aa23.52■■□□□ 1.36
SHKBP1-215ENST00000597649 MYOM1P52179 1685 aa23.51■■□□□ 1.35
SHKBP1-215ENST00000597649 MTFR1LQ9H019 292 aa23.51■■□□□ 1.35
SHKBP1-215ENST00000597649 NLRP2Q9NX02 1062 aa23.51■■□□□ 1.35
SHKBP1-215ENST00000597649 ERBB3P21860 1342 aa23.51■■□□□ 1.35
SHKBP1-215ENST00000597649 SBNO2Q9Y2G9 1366 aa23.49■■□□□ 1.35
SHKBP1-215ENST00000597649 CD163L1Q9NR16 1453 aa23.49■■□□□ 1.35
SHKBP1-215ENST00000597649 IL2RBP14784 551 aa23.47■■□□□ 1.35
SHKBP1-215ENST00000597649 ZNF784Q8NCA9 323 aaPredicted RBP23.47■■□□□ 1.35
SHKBP1-215ENST00000597649 ANKRD24Q8TF21 1146 aa23.47■■□□□ 1.35
SHKBP1-215ENST00000597649 SLC12A5Q9H2X9 1139 aa23.47■■□□□ 1.35
SHKBP1-215ENST00000597649 LRRC4BQ9NT99 713 aa23.47■■□□□ 1.35
SHKBP1-215ENST00000597649 ABCC6O95255 1503 aa23.47■■□□□ 1.35
SHKBP1-215ENST00000597649 ZNF827Q17R98 1081 aa23.45■■□□□ 1.34
SHKBP1-215ENST00000597649 GOLGB1Q14789 3259 aaKnown RBP23.45■■□□□ 1.34
SHKBP1-215ENST00000597649 TMC1Q8TDI8 760 aa23.44■■□□□ 1.34
SHKBP1-215ENST00000597649 MON2Q7Z3U7 1717 aa23.43■■□□□ 1.34
SHKBP1-215ENST00000597649 ARXQ96QS3 562 aa23.43■■□□□ 1.34
SHKBP1-215ENST00000597649 NHSQ6T4R5 1651 aa23.43■■□□□ 1.34
SHKBP1-215ENST00000597649 PAPPAQ13219 1627 aa23.41■■□□□ 1.34
SHKBP1-215ENST00000597649 HDGFL2Q7Z4V5 671 aaPredicted RBP23.4■■□□□ 1.34
SHKBP1-215ENST00000597649 CARD11Q9BXL7 1154 aa23.4■■□□□ 1.34
SHKBP1-215ENST00000597649 AKT1S1Q96B36 256 aa23.39■■□□□ 1.33
SHKBP1-215ENST00000597649 USP54Q70EL1 1684 aa23.38■■□□□ 1.33
SHKBP1-215ENST00000597649 IP6K1Q92551 441 aa23.38■■□□□ 1.33
SHKBP1-215ENST00000597649 KAT6BQ8WYB5 2073 aa23.37■■□□□ 1.33
SHKBP1-215ENST00000597649 DDX54Q8TDD1 881 aaKnown RBP23.37■■□□□ 1.33
SHKBP1-215ENST00000597649 BTAF1O14981 1849 aa23.37■■□□□ 1.33
SHKBP1-215ENST00000597649 EDC4Q6P2E9 1401 aaKnown RBP23.36■■□□□ 1.33
SHKBP1-215ENST00000597649 LTV1Q96GA3 475 aaPredicted RBP23.36■■□□□ 1.33
SHKBP1-215ENST00000597649 KCNQ4P56696 695 aa23.35■■□□□ 1.33
SHKBP1-215ENST00000597649 A0A1W2PP64 1363 aa23.35■■□□□ 1.33
SHKBP1-215ENST00000597649 MAP3K5Q99683 1374 aa23.35■■□□□ 1.33
SHKBP1-215ENST00000597649 LTN1O94822 1766 aa23.35■■□□□ 1.33
SHKBP1-215ENST00000597649 FBLN1P23142 703 aa23.34■■□□□ 1.33
SHKBP1-215ENST00000597649 PCGF6Q9BYE7 350 aa23.34■■□□□ 1.33
SHKBP1-215ENST00000597649 TERF2IPQ9NYB0 399 aa23.34■■□□□ 1.33
SHKBP1-215ENST00000597649 PRIM1P49642 420 aaKnown RBP23.32■■□□□ 1.32
SHKBP1-215ENST00000597649 SLC27A3Q5K4L6 730 aa23.32■■□□□ 1.32
SHKBP1-215ENST00000597649 PNPLA7Q6ZV29 1317 aa23.32■■□□□ 1.32
SHKBP1-215ENST00000597649 PUS7Q96PZ0 661 aaKnown RBP23.31■■□□□ 1.32
SHKBP1-215ENST00000597649 SLC16A10Q8TF71 515 aa23.3■■□□□ 1.32
SHKBP1-215ENST00000597649 GPR162Q16538 588 aa23.29■■□□□ 1.32
SHKBP1-215ENST00000597649 MAP3K19Q56UN5 1328 aa23.29■■□□□ 1.32
SHKBP1-215ENST00000597649 SYTL4Q96C24 671 aaPredicted RBP23.28■■□□□ 1.32
SHKBP1-215ENST00000597649 HOXC9P31274 260 aa23.27■■□□□ 1.32
SHKBP1-215ENST00000597649 TESK2Q96S53 571 aa23.27■■□□□ 1.32
SHKBP1-215ENST00000597649 TFCP2L1Q9NZI6 479 aa23.27■■□□□ 1.32
SHKBP1-215ENST00000597649 NSD2O96028 1365 aa23.27■■□□□ 1.31
SHKBP1-215ENST00000597649 C1QTNF8P60827 252 aa23.26■■□□□ 1.31
SHKBP1-215ENST00000597649 CHD4Q14839 1912 aa23.25■■□□□ 1.31
SHKBP1-215ENST00000597649 KLHL34Q8N239 644 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms