RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 NBPF14Q5TI25 921 aa25.03■■□□□ 1.6
SHKBP1-203ENST00000594298 NUP188Q5SRE5 1749 aa25.01■■□□□ 1.59
SHKBP1-203ENST00000594298 PEAK1Q9H792 1746 aa25.01■■□□□ 1.59
SHKBP1-203ENST00000594298 DDB1Q16531 1140 aa25.01■■□□□ 1.59
SHKBP1-203ENST00000594298 SBNO2Q9Y2G9 1366 aa25.01■■□□□ 1.59
SHKBP1-203ENST00000594298 LRRC37A3O60309 1634 aa25.01■■□□□ 1.59
SHKBP1-203ENST00000594298 CDCA7Q9BWT1 371 aaPredicted RBP25■■□□□ 1.59
SHKBP1-203ENST00000594298 PCGF6Q9BYE7 350 aa25■■□□□ 1.59
SHKBP1-203ENST00000594298 AKAP12Q02952 1782 aa24.99■■□□□ 1.59
SHKBP1-203ENST00000594298 BCL9O00512 1426 aa24.98■■□□□ 1.59
SHKBP1-203ENST00000594298 KTN1Q86UP2 1357 aaKnown RBP24.98■■□□□ 1.59
SHKBP1-203ENST00000594298 PLSCR1O15162 318 aa24.98■■□□□ 1.59
SHKBP1-203ENST00000594298 CARD10Q9BWT7 1032 aa24.97■■□□□ 1.59
SHKBP1-203ENST00000594298 NFAT5O94916 1531 aa24.96■■□□□ 1.59
SHKBP1-203ENST00000594298 BCL11BQ9C0K0 894 aaPredicted RBP24.95■■□□□ 1.58
SHKBP1-203ENST00000594298 ABCC6O95255 1503 aa24.95■■□□□ 1.58
SHKBP1-203ENST00000594298 USP31Q70CQ4 1352 aa24.93■■□□□ 1.58
SHKBP1-203ENST00000594298 RGPD3A6NKT7 1758 aaPredicted RBP24.93■■□□□ 1.58
SHKBP1-203ENST00000594298 RGPD4Q7Z3J3 1758 aa24.93■■□□□ 1.58
SHKBP1-203ENST00000594298 SOX12O15370 315 aa24.93■■□□□ 1.58
SHKBP1-203ENST00000594298 MARCH10Q8NA82 808 aaPredicted RBP24.93■■□□□ 1.58
SHKBP1-203ENST00000594298 WNK3Q9BYP7 1800 aa24.92■■□□□ 1.58
SHKBP1-203ENST00000594298 CSB-PGBD3P0DP91 1061 aa24.92■■□□□ 1.58
SHKBP1-203ENST00000594298 CARD11Q9BXL7 1154 aa24.91■■□□□ 1.58
SHKBP1-203ENST00000594298 CCDC7Q96M83 1385 aa24.91■■□□□ 1.58
SHKBP1-203ENST00000594298 MON2Q7Z3U7 1717 aa24.9■■□□□ 1.58
SHKBP1-203ENST00000594298 CD163L1Q9NR16 1453 aa24.89■■□□□ 1.58
SHKBP1-203ENST00000594298 SBF2Q86WG5 1849 aa24.89■■□□□ 1.57
SHKBP1-203ENST00000594298 PTF1AQ7RTS3 328 aa24.88■■□□□ 1.57
SHKBP1-203ENST00000594298 SPON1Q9HCB6 807 aa24.88■■□□□ 1.57
SHKBP1-203ENST00000594298 EXOC5O00471 708 aa24.87■■□□□ 1.57
SHKBP1-203ENST00000594298 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.87■■□□□ 1.57
SHKBP1-203ENST00000594298 USP54Q70EL1 1684 aa24.87■■□□□ 1.57
SHKBP1-203ENST00000594298 KCNQ2O43526 872 aa24.86■■□□□ 1.57
SHKBP1-203ENST00000594298 PUS7Q96PZ0 661 aaKnown RBP24.85■■□□□ 1.57
SHKBP1-203ENST00000594298 RGPD5Q99666 1765 aa24.85■■□□□ 1.57
SHKBP1-203ENST00000594298 HDGFL2Q7Z4V5 671 aaPredicted RBP24.84■■□□□ 1.57
SHKBP1-203ENST00000594298 NME9Q86XW9 330 aa24.84■■□□□ 1.57
SHKBP1-203ENST00000594298 PROM2Q8N271 834 aa24.84■■□□□ 1.57
SHKBP1-203ENST00000594298 ANO8Q9HCE9 1232 aaPredicted RBP24.84■■□□□ 1.57
SHKBP1-203ENST00000594298 TNS2Q63HR2 1409 aa24.84■■□□□ 1.57
SHKBP1-203ENST00000594298 ERBB3P21860 1342 aa24.84■■□□□ 1.57
SHKBP1-203ENST00000594298 EDC4Q6P2E9 1401 aaKnown RBP24.82■■□□□ 1.56
SHKBP1-203ENST00000594298 TMC1Q8TDI8 760 aa24.82■■□□□ 1.56
SHKBP1-203ENST00000594298 SLC12A5Q9H2X9 1139 aa24.82■■□□□ 1.56
SHKBP1-203ENST00000594298 TONSLQ96HA7 1378 aa24.81■■□□□ 1.56
SHKBP1-203ENST00000594298 TERF2IPQ9NYB0 399 aa24.8■■□□□ 1.56
SHKBP1-203ENST00000594298 PPP1R1BQ9UD71 204 aaPredicted RBP24.8■■□□□ 1.56
SHKBP1-203ENST00000594298 NINLQ9Y2I6 1382 aa24.8■■□□□ 1.56
SHKBP1-203ENST00000594298 TXNRD1Q16881 649 aa24.78■■□□□ 1.56
SHKBP1-203ENST00000594298 A0A1W2PP64 1363 aa24.78■■□□□ 1.56
SHKBP1-203ENST00000594298 NLRP2Q9NX02 1062 aa24.77■■□□□ 1.56
SHKBP1-203ENST00000594298 CASZ1Q86V15 1759 aa24.76■■□□□ 1.55
SHKBP1-203ENST00000594298 IL2RBP14784 551 aa24.76■■□□□ 1.55
SHKBP1-203ENST00000594298 ANKRD24Q8TF21 1146 aa24.76■■□□□ 1.55
SHKBP1-203ENST00000594298 CLSPNQ9HAW4 1339 aa24.76■■□□□ 1.55
SHKBP1-203ENST00000594298 TESK2Q96S53 571 aa24.73■■□□□ 1.55
SHKBP1-203ENST00000594298 PDGFDQ9GZP0 370 aaPredicted RBP24.73■■□□□ 1.55
SHKBP1-203ENST00000594298 STK32BQ9NY57 414 aa24.73■■□□□ 1.55
SHKBP1-203ENST00000594298 SLC15A2Q16348 729 aa24.72■■□□□ 1.55
SHKBP1-203ENST00000594298 LTN1O94822 1766 aa24.72■■□□□ 1.55
SHKBP1-203ENST00000594298 NHSQ6T4R5 1651 aa24.72■■□□□ 1.55
SHKBP1-203ENST00000594298 SLC24A1O60721 1099 aa24.71■■□□□ 1.55
SHKBP1-203ENST00000594298 IP6K1Q92551 441 aa24.7■■□□□ 1.54
SHKBP1-203ENST00000594298 ACSBG1Q96GR2 724 aa24.69■■□□□ 1.54
SHKBP1-203ENST00000594298 ST20-MTHFSA0A0A6YYL1 179 aa24.68■■□□□ 1.54
SHKBP1-203ENST00000594298 ZBTB7AO95365 584 aa24.68■■□□□ 1.54
SHKBP1-203ENST00000594298 PTGER2P43116 358 aa24.68■■□□□ 1.54
SHKBP1-203ENST00000594298 DCAF8L1A6NGE4 600 aa24.67■■□□□ 1.54
SHKBP1-203ENST00000594298 YY1P25490 414 aa24.67■■□□□ 1.54
SHKBP1-203ENST00000594298 CCER1Q8TC90 406 aaPredicted RBP24.67■■□□□ 1.54
SHKBP1-203ENST00000594298 TIMELESSQ9UNS1 1208 aa24.67■■□□□ 1.54
SHKBP1-203ENST00000594298 COG3Q96JB2 828 aa24.64■■□□□ 1.54
SHKBP1-203ENST00000594298 MTFR1LQ9H019 292 aa24.64■■□□□ 1.54
SHKBP1-203ENST00000594298 MAP3K19Q56UN5 1328 aa24.62■■□□□ 1.53
SHKBP1-203ENST00000594298 PAPPAQ13219 1627 aa24.62■■□□□ 1.53
SHKBP1-203ENST00000594298 ATF5Q9Y2D1 282 aaPredicted RBP24.62■■□□□ 1.53
SHKBP1-203ENST00000594298 ANKRD36BQ8N2N9 1353 aa24.62■■□□□ 1.53
SHKBP1-203ENST00000594298 FAM208AQ9UK61 1670 aaKnown RBP24.62■■□□□ 1.53
SHKBP1-203ENST00000594298 HOXC9P31274 260 aa24.61■■□□□ 1.53
SHKBP1-203ENST00000594298 MYOM1P52179 1685 aa24.6■■□□□ 1.53
SHKBP1-203ENST00000594298 LTV1Q96GA3 475 aaPredicted RBP24.6■■□□□ 1.53
SHKBP1-203ENST00000594298 SGIP1Q9BQI5 828 aa24.6■■□□□ 1.53
SHKBP1-203ENST00000594298 BTAF1O14981 1849 aa24.58■■□□□ 1.53
SHKBP1-203ENST00000594298 AMPHP49418 695 aa24.57■■□□□ 1.52
SHKBP1-203ENST00000594298 DDX54Q8TDD1 881 aaKnown RBP24.57■■□□□ 1.52
SHKBP1-203ENST00000594298 LRRC4BQ9NT99 713 aa24.57■■□□□ 1.52
SHKBP1-203ENST00000594298 RTL1A6NKG5 1358 aa24.56■■□□□ 1.52
SHKBP1-203ENST00000594298 SLC27A3Q5K4L6 730 aa24.56■■□□□ 1.52
SHKBP1-203ENST00000594298 TMF1P82094 1093 aa24.55■■□□□ 1.52
SHKBP1-203ENST00000594298 ZNF827Q17R98 1081 aa24.55■■□□□ 1.52
SHKBP1-203ENST00000594298 SYT17Q9BSW7 474 aa24.55■■□□□ 1.52
SHKBP1-203ENST00000594298 FHDC1Q9C0D6 1143 aaPredicted RBP24.55■■□□□ 1.52
SHKBP1-203ENST00000594298 FBLN1P23142 703 aa24.54■■□□□ 1.52
SHKBP1-203ENST00000594298 FYB1O15117 783 aa24.53■■□□□ 1.52
SHKBP1-203ENST00000594298 AKT1S1Q96B36 256 aa24.53■■□□□ 1.52
SHKBP1-203ENST00000594298 USP47Q96K76 1375 aa24.52■■□□□ 1.52
SHKBP1-203ENST00000594298 ZCRB1Q8TBF4 217 aaKnown RBP24.51■■□□□ 1.51
SHKBP1-203ENST00000594298 ARXQ96QS3 562 aa24.51■■□□□ 1.51
SHKBP1-203ENST00000594298 MEGF6O75095 1541 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms