RNA–Protein interactions for RNA: ENST00000591877.1

VMP1-213, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 791 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-213ENST00000591877 KDM5CP41229 1560 aa12.02□□□□□ -0.49
VMP1-213ENST00000591877 AVPP01185 164 aa12.02□□□□□ -0.49
VMP1-213ENST00000591877 ARID4BQ4LE39 1312 aaPredicted RBP12.02□□□□□ -0.49
VMP1-213ENST00000591877 CEP162Q5TB80 1403 aa12.02□□□□□ -0.49
VMP1-213ENST00000591877 ARHGEF12Q9NZN5 1544 aa12.01□□□□□ -0.49
VMP1-213ENST00000591877 RIMS1Q86UR5 1692 aaKnown RBP12.01□□□□□ -0.49
VMP1-213ENST00000591877 ITSN2Q9NZM3 1697 aa12.01□□□□□ -0.49
VMP1-213ENST00000591877 NFX1Q12986 1120 aaKnown RBP12.01□□□□□ -0.49
VMP1-213ENST00000591877 CYP4X1Q8N118 509 aa12.01□□□□□ -0.49
VMP1-213ENST00000591877 ABCC1P33527 1531 aa12.01□□□□□ -0.49
VMP1-213ENST00000591877 AFAP1Q8N556 730 aa12□□□□□ -0.49
VMP1-213ENST00000591877 FAM117AQ9C073 453 aa12□□□□□ -0.49
VMP1-213ENST00000591877 ZNF518AQ6AHZ1 1483 aa12□□□□□ -0.49
VMP1-213ENST00000591877 RPIAP49247 311 aa11.99□□□□□ -0.49
VMP1-213ENST00000591877 PARP9Q8IXQ6 854 aa11.99□□□□□ -0.49
VMP1-213ENST00000591877 STK17AQ9UEE5 414 aa11.99□□□□□ -0.49
VMP1-213ENST00000591877 ATP10AO60312 1499 aa11.99□□□□□ -0.49
VMP1-213ENST00000591877 GPATCH8Q9UKJ3 1502 aaKnown RBP11.99□□□□□ -0.49
VMP1-213ENST00000591877 SAMD9LQ8IVG5 1584 aa11.98□□□□□ -0.49
VMP1-213ENST00000591877 TRAPPC8Q9Y2L5 1435 aa11.98□□□□□ -0.49
VMP1-213ENST00000591877 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.98□□□□□ -0.49
VMP1-213ENST00000591877 LOC105371045A0A1W2PR82 267 aa11.98□□□□□ -0.49
VMP1-213ENST00000591877 GOPCQ9HD26 462 aa11.98□□□□□ -0.49
VMP1-213ENST00000591877 FCF1Q9Y324 198 aaKnown RBP11.98□□□□□ -0.49
VMP1-213ENST00000591877 ABCA6Q8N139 1617 aa11.97□□□□□ -0.49
VMP1-213ENST00000591877 DIP2CQ9Y2E4 1556 aa11.97□□□□□ -0.49
VMP1-213ENST00000591877 CD2BP2O95400 341 aaKnown RBP11.97□□□□□ -0.49
VMP1-213ENST00000591877 ZMYND15Q9H091 742 aa11.97□□□□□ -0.49
VMP1-213ENST00000591877 FER1L4A9Z1Z3 1794 aa11.97□□□□□ -0.49
VMP1-213ENST00000591877 C9orf84Q5VXU9 1444 aa11.96□□□□□ -0.49
VMP1-213ENST00000591877 PLEKHG3A1L390 1219 aa11.96□□□□□ -0.49
VMP1-213ENST00000591877 KIDINS220Q9ULH0 1771 aa11.96□□□□□ -0.49
VMP1-213ENST00000591877 MLH3Q9UHC1 1453 aa11.95□□□□□ -0.5
VMP1-213ENST00000591877 CTC1Q2NKJ3 1217 aa11.95□□□□□ -0.5
VMP1-213ENST00000591877 REREQ9P2R6 1566 aa11.94□□□□□ -0.5
VMP1-213ENST00000591877 WIPF1O43516 503 aa11.94□□□□□ -0.5
VMP1-213ENST00000591877 MLECQ14165 292 aa11.94□□□□□ -0.5
VMP1-213ENST00000591877 MTUS2Q5JR59 1369 aa11.93□□□□□ -0.5
VMP1-213ENST00000591877 TIAM1Q13009 1591 aa11.93□□□□□ -0.5
VMP1-213ENST00000591877 EHBP1L1Q8N3D4 1523 aa11.93□□□□□ -0.5
VMP1-213ENST00000591877 SYCP2Q9BX26 1530 aa11.93□□□□□ -0.5
VMP1-213ENST00000591877 SMCPP49901 116 aaPredicted RBP11.93□□□□□ -0.5
VMP1-213ENST00000591877 INSM1Q01101 510 aaPredicted RBP11.93□□□□□ -0.5
VMP1-213ENST00000591877 PXYLP1Q8TE99 480 aa11.93□□□□□ -0.5
VMP1-213ENST00000591877 RSPH6AQ9H0K4 717 aa11.93□□□□□ -0.5
VMP1-213ENST00000591877 TTC24A2A3L6 582 aaPredicted RBP11.92□□□□□ -0.5
VMP1-213ENST00000591877 FECHP22830 423 aa11.92□□□□□ -0.5
VMP1-213ENST00000591877 RSPH4AQ5TD94 716 aa11.92□□□□□ -0.5
VMP1-213ENST00000591877 ZNF777Q9ULD5 760 aaPredicted RBP11.92□□□□□ -0.5
VMP1-213ENST00000591877 CCNB3Q8WWL7 1395 aa11.92□□□□□ -0.5
VMP1-213ENST00000591877 LMTK3Q96Q04 1460 aa11.91□□□□□ -0.5
VMP1-213ENST00000591877 TTLL12Q14166 644 aaPredicted RBP11.91□□□□□ -0.5
VMP1-213ENST00000591877 LCE2CQ5TA81 110 aa11.91□□□□□ -0.5
VMP1-213ENST00000591877 HNRNPMP52272 730 aaKnown RBP eCLIP11.9□□□□□ -0.5
VMP1-213ENST00000591877 CFDP1Q9UEE9 299 aaPredicted RBP11.9□□□□□ -0.5
VMP1-213ENST00000591877 AGLP35573 1532 aa11.9□□□□□ -0.5
VMP1-213ENST00000591877 KIAA1107Q9UPP5 1409 aa11.89□□□□□ -0.51
VMP1-213ENST00000591877 FLIIQ13045 1269 aa11.89□□□□□ -0.51
VMP1-213ENST00000591877 FAM160A2Q8N612 972 aaPredicted RBP11.89□□□□□ -0.51
VMP1-213ENST00000591877 THAP11Q96EK4 314 aa11.89□□□□□ -0.51
VMP1-213ENST00000591877 SUPT6HQ7KZ85 1726 aaKnown RBP11.89□□□□□ -0.51
VMP1-213ENST00000591877 ZNF644Q9H582 1327 aaPredicted RBP11.88□□□□□ -0.51
VMP1-213ENST00000591877 INO80Q9ULG1 1556 aaPredicted RBP11.88□□□□□ -0.51
VMP1-213ENST00000591877 VPS8Q8N3P4 1428 aa11.88□□□□□ -0.51
VMP1-213ENST00000591877 OATP04181 439 aa11.88□□□□□ -0.51
VMP1-213ENST00000591877 SNRPBP14678 240 aaKnown RBP11.88□□□□□ -0.51
VMP1-213ENST00000591877 MORN1Q5T089 497 aa11.88□□□□□ -0.51
VMP1-213ENST00000591877 PRDM9Q9NQV7 894 aa11.88□□□□□ -0.51
VMP1-213ENST00000591877 PLEKHH2Q8IVE3 1493 aa11.88□□□□□ -0.51
VMP1-213ENST00000591877 RDH13Q8NBN7 331 aa11.87□□□□□ -0.51
VMP1-213ENST00000591877 NCOA2Q15596 1464 aa11.87□□□□□ -0.51
VMP1-213ENST00000591877 ATP7AQ04656 1500 aa11.86□□□□□ -0.51
VMP1-213ENST00000591877 CEBPAP49715 358 aaPredicted RBP11.86□□□□□ -0.51
VMP1-213ENST00000591877 FUT2Q10981 343 aa11.86□□□□□ -0.51
VMP1-213ENST00000591877 GIGYF2Q6Y7W6 1299 aaKnown RBP11.86□□□□□ -0.51
VMP1-213ENST00000591877 ATP13A2Q9NQ11 1180 aa11.86□□□□□ -0.51
VMP1-213ENST00000591877 MBD5Q9P267 1494 aa11.86□□□□□ -0.51
VMP1-213ENST00000591877 C3P01024 1663 aa11.86□□□□□ -0.51
VMP1-213ENST00000591877 SPAG9O60271 1321 aaKnown RBP11.86□□□□□ -0.51
VMP1-213ENST00000591877 TERTO14746 1132 aaKnown RBP11.85□□□□□ -0.51
VMP1-213ENST00000591877 ZBTB24O43167 697 aaPredicted RBP11.85□□□□□ -0.51
VMP1-213ENST00000591877 FMNL1O95466 1100 aaPredicted RBP11.85□□□□□ -0.51
VMP1-213ENST00000591877 SMPD1P17405 629 aa11.85□□□□□ -0.51
VMP1-213ENST00000591877 SLC27A5Q9Y2P5 690 aa11.85□□□□□ -0.51
VMP1-213ENST00000591877 PLXNC1O60486 1568 aa11.84□□□□□ -0.51
VMP1-213ENST00000591877 LRRC9Q6ZRR7 1453 aa11.84□□□□□ -0.51
VMP1-213ENST00000591877 METTL3Q86U44 580 aaKnown RBP11.84□□□□□ -0.51
VMP1-213ENST00000591877 PREX1Q8TCU6 1659 aa11.84□□□□□ -0.51
VMP1-213ENST00000591877 MAP3K1Q13233 1512 aa11.83□□□□□ -0.52
VMP1-213ENST00000591877 HSPA2P54652 639 aa11.83□□□□□ -0.52
VMP1-213ENST00000591877 ADGBQ8N7X0 1667 aa11.82□□□□□ -0.52
VMP1-213ENST00000591877 CLCN1P35523 988 aa11.82□□□□□ -0.52
VMP1-213ENST00000591877 ATP6V1AP38606 617 aa11.82□□□□□ -0.52
VMP1-213ENST00000591877 KANK4Q5T7N3 995 aaPredicted RBP11.82□□□□□ -0.52
VMP1-213ENST00000591877 A2MP01023 1474 aa11.82□□□□□ -0.52
VMP1-213ENST00000591877 CAMSAP2Q08AD1 1489 aa11.82□□□□□ -0.52
VMP1-213ENST00000591877 SETD1BQ9UPS6 1966 aaKnown RBP11.81□□□□□ -0.52
VMP1-213ENST00000591877 SNIP1Q8TAD8 396 aaKnown RBP11.81□□□□□ -0.52
VMP1-213ENST00000591877 DDX11L8A8MPP1 907 aa11.8□□□□□ -0.52
VMP1-213ENST00000591877 J3QL48 77 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms