RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, humanhuman

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-219ENST00000589349 COPS2P61201 443 aa12.71□□□□□ -0.37
DNMT1-219ENST00000589349 IFFO2Q5TF58 517 aa12.71□□□□□ -0.37
DNMT1-219ENST00000589349 BLOC1S3Q6QNY0 202 aa12.71□□□□□ -0.37
DNMT1-219ENST00000589349 BEGAINQ9BUH8 593 aa12.71□□□□□ -0.37
DNMT1-219ENST00000589349 CAMSAP2Q08AD1 1489 aa12.71□□□□□ -0.38
DNMT1-219ENST00000589349 DIXDC1Q155Q3 683 aa12.69□□□□□ -0.38
DNMT1-219ENST00000589349 KDM4CQ9H3R0 1056 aa12.69□□□□□ -0.38
DNMT1-219ENST00000589349 UHRF1BP1Q6BDS2 1440 aa12.69□□□□□ -0.38
DNMT1-219ENST00000589349 CCDC141Q6ZP82 1450 aa12.68□□□□□ -0.38
DNMT1-219ENST00000589349 GPBP1L1Q9HC44 474 aaPredicted RBP12.68□□□□□ -0.38
DNMT1-219ENST00000589349 AGLP35573 1532 aa12.67□□□□□ -0.38
DNMT1-219ENST00000589349 NEUROD2Q15784 382 aa12.67□□□□□ -0.38
DNMT1-219ENST00000589349 PUS10Q3MIT2 529 aaKnown RBP12.67□□□□□ -0.38
DNMT1-219ENST00000589349 CNTLNQ9NXG0 1405 aa12.67□□□□□ -0.38
DNMT1-219ENST00000589349 REREQ9P2R6 1566 aa12.67□□□□□ -0.38
DNMT1-219ENST00000589349 ZMYM3Q14202 1370 aa12.67□□□□□ -0.38
DNMT1-219ENST00000589349 MBD5Q9P267 1494 aa12.66□□□□□ -0.38
DNMT1-219ENST00000589349 WASHC2CQ9Y4E1 1318 aa12.66□□□□□ -0.38
DNMT1-219ENST00000589349 ZPR1O75312 459 aa12.66□□□□□ -0.38
DNMT1-219ENST00000589349 FAM50AQ14320 339 aaKnown RBP12.66□□□□□ -0.38
DNMT1-219ENST00000589349 MORN1Q5T089 497 aa12.66□□□□□ -0.38
DNMT1-219ENST00000589349 HOXA2O43364 376 aa12.65□□□□□ -0.38
DNMT1-219ENST00000589349 PPARGC1BQ86YN6 1023 aaKnown RBP12.65□□□□□ -0.38
DNMT1-219ENST00000589349 DHX29Q7Z478 1369 aaKnown RBP12.65□□□□□ -0.38
DNMT1-219ENST00000589349 RTEL1-TNFRSF6BF6WH68 1400 aa12.64□□□□□ -0.39
DNMT1-219ENST00000589349 MYOM3Q5VTT5 1437 aa12.64□□□□□ -0.39
DNMT1-219ENST00000589349 SPIRE2Q8WWL2 714 aa12.64□□□□□ -0.39
DNMT1-219ENST00000589349 RRP7BPQ9NSQ0 103 aa12.64□□□□□ -0.39
DNMT1-219ENST00000589349 CHIC2Q9UKJ5 165 aa12.64□□□□□ -0.39
DNMT1-219ENST00000589349 INO80Q9ULG1 1556 aaPredicted RBP12.64□□□□□ -0.39
DNMT1-219ENST00000589349 MAP3K1Q13233 1512 aa12.63□□□□□ -0.39
DNMT1-219ENST00000589349 SCUBE3Q8IX30 993 aa12.63□□□□□ -0.39
DNMT1-219ENST00000589349 ZNF516Q92618 1163 aa12.63□□□□□ -0.39
DNMT1-219ENST00000589349 DDRGK1Q96HY6 314 aa12.63□□□□□ -0.39
DNMT1-219ENST00000589349 ADGBQ8N7X0 1667 aa12.61□□□□□ -0.39
DNMT1-219ENST00000589349 BRPF1P55201 1214 aaPredicted RBP12.61□□□□□ -0.39
DNMT1-219ENST00000589349 Q3C1V9 767 aa12.61□□□□□ -0.39
DNMT1-219ENST00000589349 TBC1D2Q9BYX2 928 aa12.61□□□□□ -0.39
DNMT1-219ENST00000589349 SLC27A5Q9Y2P5 690 aa12.61□□□□□ -0.39
DNMT1-219ENST00000589349 C3P01024 1663 aa12.61□□□□□ -0.39
DNMT1-219ENST00000589349 PREX1Q8TCU6 1659 aa12.61□□□□□ -0.39
DNMT1-219ENST00000589349 MIA2Q96PC5 1412 aa12.6□□□□□ -0.39
DNMT1-219ENST00000589349 CLTCQ00610 1675 aaKnown RBP12.6□□□□□ -0.39
DNMT1-219ENST00000589349 FBXO31Q5XUX0 539 aaPredicted RBP12.59□□□□□ -0.39
DNMT1-219ENST00000589349 SALL2Q9Y467 1007 aaPredicted RBP12.59□□□□□ -0.39
DNMT1-219ENST00000589349 FMNL1O95466 1100 aaPredicted RBP12.58□□□□□ -0.4
DNMT1-219ENST00000589349 ITGAEP38570 1179 aa12.58□□□□□ -0.4
DNMT1-219ENST00000589349 RSPH6AQ9H0K4 717 aa12.58□□□□□ -0.4
DNMT1-219ENST00000589349 SETD1BQ9UPS6 1966 aaKnown RBP12.58□□□□□ -0.4
DNMT1-219ENST00000589349 ARHGEF5Q12774 1597 aa12.57□□□□□ -0.4
DNMT1-219ENST00000589349 ADH1BP00325 375 aa12.57□□□□□ -0.4
DNMT1-219ENST00000589349 PLXNC1O60486 1568 aa12.56□□□□□ -0.4
DNMT1-219ENST00000589349 TLL1O43897 1013 aa12.56□□□□□ -0.4
DNMT1-219ENST00000589349 FDX1P10109 184 aa12.56□□□□□ -0.4
DNMT1-219ENST00000589349 GJA5P36382 358 aa12.56□□□□□ -0.4
DNMT1-219ENST00000589349 FAM117AQ9C073 453 aa12.56□□□□□ -0.4
DNMT1-219ENST00000589349 NPATQ14207 1427 aa12.55□□□□□ -0.4
DNMT1-219ENST00000589349 A0A0G2JS52 829 aa12.55□□□□□ -0.4
DNMT1-219ENST00000589349 MOXD2PA6NHM9 499 aa12.55□□□□□ -0.4
DNMT1-219ENST00000589349 GGCXP38435 758 aa12.55□□□□□ -0.4
DNMT1-219ENST00000589349 HLA-CQ95604 372 aa12.55□□□□□ -0.4
DNMT1-219ENST00000589349 SPSB2Q99619 263 aa12.55□□□□□ -0.4
DNMT1-219ENST00000589349 PTPN23Q9H3S7 1636 aa12.55□□□□□ -0.4
DNMT1-219ENST00000589349 KIF15Q9NS87 1388 aa12.55□□□□□ -0.4
DNMT1-219ENST00000589349 FGD6Q6ZV73 1430 aa12.54□□□□□ -0.4
DNMT1-219ENST00000589349 NKX2-3Q8TAU0 364 aa12.54□□□□□ -0.4
DNMT1-219ENST00000589349 THAP11Q96EK4 314 aa12.54□□□□□ -0.4
DNMT1-219ENST00000589349 TNRQ92752 1358 aa12.54□□□□□ -0.4
DNMT1-219ENST00000589349 NDUFV2P19404 249 aa12.53□□□□□ -0.4
DNMT1-219ENST00000589349 GUCA2AQ02747 115 aa12.53□□□□□ -0.4
DNMT1-219ENST00000589349 RSBN1LQ6PCB5 846 aaPredicted RBP12.53□□□□□ -0.4
DNMT1-219ENST00000589349 BRICD5Q6PL45 260 aa12.53□□□□□ -0.4
DNMT1-219ENST00000589349 MROH2AA6NES4 1674 aa12.53□□□□□ -0.4
DNMT1-219ENST00000589349 ANKRD30AQ9BXX3 1397 aa12.53□□□□□ -0.4
DNMT1-219ENST00000589349 ABCC5O15440 1437 aa12.53□□□□□ -0.4
DNMT1-219ENST00000589349 PTPRKQ15262 1439 aa12.53□□□□□ -0.4
DNMT1-219ENST00000589349 MYSM1Q5VVJ2 828 aa12.52□□□□□ -0.41
DNMT1-219ENST00000589349 ILDR2Q71H61 639 aa12.52□□□□□ -0.41
DNMT1-219ENST00000589349 KANK1Q14678 1352 aa12.52□□□□□ -0.41
DNMT1-219ENST00000589349 DAPK1P53355 1430 aa12.52□□□□□ -0.41
DNMT1-219ENST00000589349 KDM5DQ9BY66 1539 aa12.52□□□□□ -0.41
DNMT1-219ENST00000589349 SPTLC1O15269 473 aa12.51□□□□□ -0.41
DNMT1-219ENST00000589349 RIC3Q7Z5B4 369 aa12.51□□□□□ -0.41
DNMT1-219ENST00000589349 CAMSAP1Q5T5Y3 1602 aa12.51□□□□□ -0.41
DNMT1-219ENST00000589349 RNF19BQ6ZMZ0 732 aa12.5□□□□□ -0.41
DNMT1-219ENST00000589349 THEMISQ8N1K5 641 aaPredicted RBP12.5□□□□□ -0.41
DNMT1-219ENST00000589349 SLC6A16Q9GZN6 736 aa12.5□□□□□ -0.41
DNMT1-219ENST00000589349 DUOX2Q9NRD8 1548 aa12.49□□□□□ -0.41
DNMT1-219ENST00000589349 DISP3Q9P2K9 1392 aa12.49□□□□□ -0.41
DNMT1-219ENST00000589349 PLEKHG3A1L390 1219 aa12.49□□□□□ -0.41
DNMT1-219ENST00000589349 MAST1Q9Y2H9 1570 aa12.48□□□□□ -0.41
DNMT1-219ENST00000589349 NCOA1Q15788 1441 aa12.48□□□□□ -0.41
DNMT1-219ENST00000589349 CLK2P49760 499 aaKnown RBP12.48□□□□□ -0.41
DNMT1-219ENST00000589349 MSS51Q4VC12 460 aa12.48□□□□□ -0.41
DNMT1-219ENST00000589349 SH3D19Q5HYK7 790 aa12.48□□□□□ -0.41
DNMT1-219ENST00000589349 PPP1R18Q6NYC8 613 aa12.48□□□□□ -0.41
DNMT1-219ENST00000589349 ANKLE2Q86XL3 938 aa12.48□□□□□ -0.41
DNMT1-219ENST00000589349 USB1Q9BQ65 265 aaKnown RBP12.48□□□□□ -0.41
DNMT1-219ENST00000589349 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.48□□□□□ -0.41
DNMT1-219ENST00000589349 PCDHGC3Q9UN70 934 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms